Wall clock time and date at job start Tue Mar 31 2020 17:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 C 1.52992 * 109.47534 * 120.00756 * 2 1 3 5 5 N 1.46496 * 109.47619 * 174.99962 * 4 2 1 6 6 C 1.46504 * 119.99703 * 270.00150 * 5 4 2 7 7 C 1.36934 * 120.00352 * 89.99293 * 5 4 2 8 8 H 1.08001 * 120.00153 * 23.62358 * 7 5 4 9 9 C 1.38812 * 120.00334 * 203.61849 * 7 5 4 10 10 N 1.31619 * 119.99713 * 11.31719 * 9 7 5 11 11 Si 1.86803 * 120.00267 * 191.31114 * 9 7 5 12 12 H 1.48502 * 109.46590 * 60.00345 * 11 9 7 13 13 H 1.48491 * 109.47057 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47168 * 300.00440 * 11 9 7 15 15 N 1.46506 * 109.46703 * 240.00695 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99982 * 15 2 1 17 17 O 1.21283 * 119.99794 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99962 * 179.97438 * 16 15 2 19 19 C 1.50702 * 109.47230 * 179.97438 * 18 16 15 20 20 C 1.35505 * 120.05332 * 264.97950 * 19 18 16 21 21 C 1.39496 * 121.58358 * 179.74449 * 20 19 18 22 22 C 1.35502 * 121.58071 * 0.57250 * 21 20 19 23 23 C 1.41761 * 119.90232 * 359.43278 * 22 21 20 24 24 N 1.32328 * 131.01022 * 180.27560 * 23 22 21 25 25 S 1.55541 * 109.42499 * 180.02562 * 24 23 22 26 26 N 1.55538 * 100.20217 * 0.02562 * 25 24 23 27 27 C 1.32329 * 109.42329 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47303 * 59.99352 * 1 2 3 29 29 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46562 * 299.99492 * 1 2 3 31 31 H 1.09005 * 109.47068 * 294.99495 * 4 2 1 32 32 H 1.09002 * 109.47236 * 54.99324 * 4 2 1 33 33 H 1.08997 * 109.47317 * 94.53061 * 6 5 4 34 34 H 1.09006 * 109.46749 * 214.53079 * 6 5 4 35 35 H 1.08997 * 109.46883 * 334.52750 * 6 5 4 36 36 H 0.97006 * 119.99803 * 180.02562 * 10 9 7 37 37 H 0.97005 * 119.99810 * 265.00013 * 15 2 1 38 38 H 1.08998 * 109.47189 * 60.00409 * 18 16 15 39 39 H 1.08995 * 109.47578 * 299.99768 * 18 16 15 40 40 H 1.08005 * 119.20655 * 0.04226 * 20 19 18 41 41 H 1.07999 * 119.20679 * 180.28594 * 21 20 19 42 42 H 1.07997 * 120.04819 * 179.71682 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2490 5 7 3.5001 -0.8265 1.1904 6 6 4.1258 -1.9920 0.5608 7 6 4.2799 0.1647 1.7238 8 1 3.8836 0.8068 2.4964 9 6 5.5800 0.3440 1.2716 10 7 5.9918 -0.2795 0.1881 11 14 6.7451 1.4706 2.2006 12 1 6.9138 0.9716 3.5891 13 1 8.0635 1.4910 1.5178 14 1 6.1837 2.8450 2.2333 15 7 2.0182 -0.6905 -1.1963 16 6 2.1469 -0.0181 -2.3572 17 8 1.8581 1.1586 -2.4116 18 6 2.6497 -0.7283 -3.5876 19 6 2.6997 0.2399 -4.7413 20 6 1.6601 0.3183 -5.6070 21 6 1.6704 1.2066 -6.6825 22 6 2.7252 2.0239 -6.9178 23 6 3.8478 1.9958 -6.0526 24 7 4.9754 2.6882 -6.0704 25 16 5.8688 2.2525 -4.8740 26 7 4.9543 1.1744 -4.2255 27 6 3.8349 1.0693 -4.9233 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7518 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2949 33 1 4.3532 -1.7642 -0.4805 34 1 5.0472 -2.2389 1.0883 35 1 3.4426 -2.8401 0.6064 36 1 6.9004 -0.1545 -0.1277 37 1 2.2489 -1.6317 -1.1529 38 1 1.9774 -1.5505 -3.8327 39 1 3.6490 -1.1201 -3.3982 40 1 0.8009 -0.3189 -5.4579 41 1 0.8191 1.2404 -7.3462 42 1 2.7089 2.6989 -7.7607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569155173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:48 Heat of formation + Delta-G solvation = 63.743593 kcal Electronic energy + Delta-G solvation = -26867.334479 eV Core-core repulsion = 23168.283313 eV Total energy + Delta-G solvation = -3699.051166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85923 -39.10803 -36.65769 -36.08838 -34.10852 -33.84001 -31.87241 -31.07221 -30.11485 -27.76199 -26.75581 -26.14557 -25.54276 -22.46919 -22.15423 -21.13830 -20.14218 -19.71014 -19.01690 -17.40960 -16.76278 -16.61407 -16.22313 -15.51632 -15.35199 -15.13299 -14.79081 -14.36375 -13.74855 -13.60857 -13.23887 -13.14122 -12.84565 -12.48369 -12.28835 -12.12745 -12.01357 -11.73320 -11.57161 -11.41762 -11.37121 -11.26151 -11.02864 -10.80173 -10.75643 -10.63872 -10.52357 -10.43176 -10.18109 -9.95018 -9.81661 -9.24561 -8.59428 -8.54802 -8.28033 -8.19273 -6.69776 -5.68279 -3.14223 0.02582 1.52796 1.64324 1.87562 1.97073 3.30546 3.41259 3.45913 3.46933 3.52105 3.98790 4.23489 4.53846 4.77518 4.88389 5.07832 5.16918 5.28363 5.34472 5.43923 5.52040 5.54423 5.71981 5.74249 5.89558 5.98234 6.03275 6.05951 6.13700 6.28388 6.33233 6.36385 6.49216 6.50522 6.57677 6.67309 6.93645 6.99797 7.26274 7.35110 7.69542 7.83756 8.21613 8.43413 8.93036 9.27121 9.89459 10.37924 11.36554 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.004656 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.575996 B = 6012.245655 C = 7888.024769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.163 3.837 7 C -0.259 4.259 8 H 0.065 0.935 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.900 3.100 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.284 1.284 15 N -0.699 5.699 16 C 0.526 3.474 17 O -0.548 6.548 18 C -0.104 4.104 19 C 0.008 3.992 20 C -0.102 4.102 21 C -0.086 4.086 22 C -0.078 4.078 23 C 0.080 3.920 24 N -0.609 5.609 25 S 0.788 5.212 26 N -0.560 5.560 27 C 0.090 3.910 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.042 0.958 35 H -0.007 1.007 36 H 0.251 0.749 37 H 0.394 0.606 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 -2.318 -13.195 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.101 0.899 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.018 3.982 7 C -0.389 4.389 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.211 1.211 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.426 6.426 18 C -0.144 4.144 19 C 0.000 4.000 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.102 4.102 23 C -0.079 4.079 24 N -0.459 5.459 25 S 0.835 5.165 26 N -0.410 5.410 27 C -0.069 4.069 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.012 0.988 36 H 0.061 0.939 37 H 0.228 0.772 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.774 -0.733 -12.631 13.907 hybrid contribution -0.681 -0.241 0.026 0.723 sum -6.454 -0.974 -12.605 14.195 Atomic orbital electron populations 1.22147 0.97036 1.00958 1.01570 1.21825 0.91493 0.99108 0.86504 0.89926 1.21183 0.85875 0.97099 0.94335 1.43850 0.98994 1.20842 1.68140 1.20838 0.94470 0.84997 0.97913 1.19084 0.94612 1.10799 1.14367 0.91677 1.24998 0.98839 0.98974 0.96261 1.70024 1.17148 1.45398 1.21737 0.86408 0.80448 0.80863 0.79228 1.21136 1.21661 1.21070 1.45735 1.66294 1.13594 1.09169 1.20047 0.77323 0.87164 0.84282 1.90652 1.50776 1.15849 1.85300 1.20657 1.04857 0.97318 0.91545 1.18463 0.90607 0.95210 0.95706 1.20529 0.97505 0.99750 0.94862 1.20645 0.97859 0.95102 0.97432 1.20155 0.90539 1.00860 0.98666 1.21309 0.93659 0.95020 0.97954 1.72191 1.11605 1.32440 1.29686 1.78656 1.22107 1.14241 1.01447 1.72328 1.10638 1.25412 1.32671 1.21113 0.93454 0.99615 0.92742 0.93035 0.93242 0.92267 0.92494 0.94107 0.94982 0.93954 0.98810 0.93863 0.77204 0.88094 0.87156 0.84806 0.84693 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 37.16 0.35 -2.05 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.06 16 3 H 0.08 1.95 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.81 5.33 -4.05 -0.02 2.78 16 5 N -0.60 -14.41 2.78 -181.12 -0.50 -14.91 16 6 C 0.16 3.76 7.61 59.85 0.46 4.22 16 7 C -0.26 -7.10 9.66 -15.06 -0.15 -7.25 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.90 -25.91 10.66 55.49 0.59 -25.32 16 11 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 N -0.70 -12.76 4.41 -53.81 -0.24 -12.99 16 16 C 0.53 10.09 7.79 -10.99 -0.09 10.00 16 17 O -0.55 -12.56 15.70 5.56 0.09 -12.47 16 18 C -0.10 -1.58 5.81 -29.03 -0.17 -1.75 16 19 C 0.01 0.12 4.40 -104.25 -0.46 -0.34 16 20 C -0.10 -1.23 9.51 -40.09 -0.38 -1.61 16 21 C -0.09 -0.90 9.89 -40.09 -0.40 -1.30 16 22 C -0.08 -0.97 10.09 -39.21 -0.40 -1.36 16 23 C 0.08 1.28 7.17 -83.17 -0.60 0.68 16 24 N -0.61 -9.71 11.44 25.63 0.29 -9.42 16 25 S 0.79 12.03 23.60 -107.50 -2.54 9.49 16 26 N -0.56 -10.68 11.39 25.63 0.29 -10.38 16 27 C 0.09 1.59 6.91 -83.16 -0.57 1.02 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 32 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 34 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 35 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.39 6.53 7.17 -40.82 -0.29 6.24 16 38 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 39 H 0.11 1.83 8.13 -51.93 -0.42 1.41 16 40 H 0.13 1.21 8.03 -52.48 -0.42 0.79 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -35.33 366.07 -9.80 -45.13 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.58 Total: 2.85 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.70 Total: 5.25 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: 0.44 Total: -73.03 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 16 Polarization: 12.03 SS G_CDS: -2.54 Total: 9.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.33 -9.80 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569155173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.879 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds