Wall clock time and date at job start Tue Mar 31 2020 17:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47465 * 2 1 4 4 N 1.46503 * 109.47144 * 239.99562 * 2 1 3 5 5 C 1.36934 * 119.99766 * 85.00253 * 4 2 1 6 6 H 1.08008 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00400 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00666 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99595 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47185 * 89.99718 * 9 7 5 11 11 H 1.48493 * 109.47152 * 210.00065 * 9 7 5 12 12 H 1.48506 * 109.47151 * 330.00020 * 9 7 5 13 13 C 1.53003 * 109.46976 * 120.00062 * 2 1 3 14 14 H 1.08996 * 109.47262 * 184.99937 * 13 2 1 15 15 C 1.53001 * 109.47084 * 64.99492 * 13 2 1 16 16 N 1.46503 * 109.46840 * 304.99852 * 13 2 1 17 17 C 1.34780 * 119.99846 * 204.99897 * 16 13 2 18 18 O 1.21568 * 120.00008 * 0.02562 * 17 16 13 19 19 C 1.47751 * 119.99821 * 179.97438 * 17 16 13 20 20 C 1.41128 * 126.30273 * 179.97438 * 19 17 16 21 21 C 1.36975 * 105.41731 * 180.02562 * 20 19 17 22 22 C 1.47393 * 126.63359 * 179.73921 * 21 20 19 23 23 C 1.34979 * 125.27824 * 179.97438 * 22 21 20 24 24 C 1.37916 * 114.66981 * 180.02562 * 23 22 21 25 25 C 1.33641 * 115.08483 * 359.97438 * 24 23 22 26 26 S 1.75855 * 109.78256 * 359.73833 * 25 24 23 27 27 N 1.36515 * 106.73652 * 0.02562 * 21 20 19 28 28 H 0.97003 * 125.02177 * 180.02562 * 27 21 20 29 29 N 1.28450 * 109.95639 * 0.02562 * 27 21 20 30 30 H 1.09003 * 109.46654 * 60.00196 * 1 2 3 31 31 H 1.08998 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47169 * 300.00631 * 1 2 3 33 33 H 0.96996 * 120.00351 * 265.00786 * 4 2 1 34 34 H 0.97005 * 120.00203 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47435 * 300.00340 * 15 13 2 36 36 H 1.09004 * 109.46985 * 60.00309 * 15 13 2 37 37 H 1.08999 * 109.46733 * 179.97438 * 15 13 2 38 38 H 0.97000 * 120.00309 * 24.99773 * 16 13 2 39 39 H 1.08002 * 127.29751 * 0.02562 * 20 19 17 40 40 H 1.07998 * 122.66364 * 0.02562 * 23 22 21 41 41 H 1.07996 * 122.45507 * 179.97438 * 24 23 22 42 42 H 1.07993 * 125.10513 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0404 -2.4241 7 6 2.6114 -0.6621 -3.5093 8 7 2.7376 -0.0055 -4.6429 9 14 3.0542 -2.4750 -3.4257 10 1 1.8563 -3.2924 -3.7451 11 1 4.1294 -2.7676 -4.4072 12 1 3.5290 -2.8060 -2.0581 13 6 2.0400 -0.7213 1.2493 14 1 3.1262 -0.6444 1.2952 15 6 1.6351 -2.1955 1.1880 16 7 1.4558 -0.1036 2.4424 17 6 2.0912 -0.1938 3.6276 18 8 3.1492 -0.7872 3.7065 19 6 1.5023 0.4297 4.8308 20 6 2.0498 0.4169 6.1314 21 6 1.1614 1.1132 6.9073 22 6 1.2759 1.3789 8.3526 23 6 0.3824 2.0702 9.0914 24 6 0.7078 2.1880 10.4264 25 6 1.8540 1.6013 10.7841 26 16 2.5940 0.8374 9.3837 27 7 0.1462 1.5081 6.0845 28 1 -0.6280 2.0221 6.3628 29 7 0.3676 1.0986 4.8874 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2489 -1.6319 -1.1526 34 1 3.0602 -0.4630 -5.4351 35 1 0.5488 -2.2723 1.1421 36 1 2.0697 -2.6550 0.3003 37 1 1.9988 -2.7094 2.0778 38 1 0.6118 0.3702 2.3794 39 1 2.9737 -0.0442 6.4481 40 1 -0.5159 2.4971 8.6704 41 1 0.0822 2.7157 11.1310 42 1 2.2619 1.5933 11.7840 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700420505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:00 Heat of formation + Delta-G solvation = 88.375925 kcal Electronic energy + Delta-G solvation = -25089.590307 eV Core-core repulsion = 21391.607279 eV Total energy + Delta-G solvation = -3697.983028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.89992 -39.55198 -38.22897 -36.99983 -34.01579 -32.71266 -32.27314 -31.64349 -29.70918 -28.63335 -28.52693 -25.04486 -24.75811 -24.09890 -22.47560 -21.89717 -20.61906 -19.76866 -19.20296 -18.80171 -17.95168 -17.35657 -16.60673 -16.11949 -15.68658 -15.52951 -14.91728 -14.52081 -14.18088 -14.13428 -13.95448 -13.76187 -13.57608 -13.55843 -13.15673 -12.77537 -12.67266 -12.57221 -12.12809 -11.73441 -11.50421 -11.38194 -11.21438 -11.08894 -10.87622 -10.59193 -10.44911 -10.29084 -10.07426 -9.98803 -9.72955 -9.55842 -9.04536 -8.94529 -8.85815 -8.58420 -7.29230 -5.76210 -3.12487 0.05597 0.92422 1.38086 1.43081 1.73600 2.42895 2.45522 3.19307 3.38405 3.39584 3.42474 3.47584 3.98341 4.17517 4.50222 4.60227 4.64716 4.88497 4.99007 5.17525 5.23572 5.31453 5.33831 5.44444 5.48335 5.58956 5.67370 5.68123 5.83676 5.95925 5.96501 6.05378 6.19397 6.30985 6.35811 6.48664 6.50638 6.67346 6.78617 7.01426 7.38125 7.71531 7.99287 8.29235 8.42295 9.20363 9.92621 10.11642 11.41837 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002008 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.168667 B =13938.985634 C =14359.320765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.132 3.868 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.703 5.703 17 C 0.600 3.400 18 O -0.531 6.531 19 C -0.001 4.001 20 C -0.155 4.155 21 C 0.077 3.923 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.217 4.217 26 S 0.170 5.830 27 N -0.372 5.372 28 H 0.447 0.553 29 N -0.241 5.241 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.405 0.595 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 3.776 33.874 34.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.388 5.388 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.110 0.890 15 C -0.220 4.220 16 N -0.356 5.356 17 C 0.383 3.617 18 O -0.406 6.406 19 C -0.161 4.161 20 C -0.184 4.184 21 C -0.049 4.049 22 C -0.246 4.246 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.354 4.354 26 S 0.435 5.565 27 N -0.088 5.088 28 H 0.292 0.708 29 N -0.078 5.078 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.242 0.758 39 H 0.184 0.816 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.428 2.999 32.774 33.355 hybrid contribution -1.272 -0.134 0.838 1.529 sum -6.700 2.865 33.612 34.393 Atomic orbital electron populations 1.22502 0.98724 1.01323 1.00411 1.20328 0.92427 0.95911 0.85035 0.92042 1.42791 1.79791 1.09556 1.06659 1.19050 1.37199 0.95681 0.85376 0.89105 1.24650 1.01281 0.97500 0.95559 1.69694 1.52547 1.35537 1.00244 0.86608 0.78207 0.86871 0.77226 1.21027 1.21667 1.20156 1.21400 0.99316 0.92747 0.83764 0.88993 1.22179 1.01858 0.95922 1.02090 1.46063 1.25895 1.55938 1.07695 1.16855 0.83920 0.79427 0.81512 1.90807 1.21821 1.42941 1.84995 1.21921 0.94117 1.04263 0.95788 1.21774 1.01591 1.03733 0.91284 1.18832 0.92353 1.04197 0.89524 1.21967 1.01535 1.07511 0.93550 1.20258 1.00535 1.01798 0.93852 1.19996 0.97623 1.02680 0.95888 1.25898 1.00698 1.05841 1.02946 1.84462 1.22014 1.52336 0.97719 1.43510 1.19585 1.41313 1.04402 0.70786 1.73533 1.18089 1.13700 1.02467 0.91856 0.92902 0.94360 0.80221 0.93042 0.92096 0.91301 0.92598 0.75750 0.81590 0.84424 0.83834 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.01 37.16 0.33 -2.48 16 2 C 0.17 3.28 2.93 -67.93 -0.20 3.08 16 3 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 4 N -0.74 -17.32 4.84 -53.42 -0.26 -17.58 16 5 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 6 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 9 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 13 C 0.13 2.24 2.62 -67.93 -0.18 2.06 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 15 C -0.16 -2.61 9.00 37.16 0.33 -2.28 16 16 N -0.70 -10.32 4.99 -54.78 -0.27 -10.59 16 17 C 0.60 9.30 7.79 -12.37 -0.10 9.20 16 18 O -0.53 -9.77 16.58 5.31 0.09 -9.69 16 19 C 0.00 -0.01 7.11 -82.88 -0.59 -0.60 16 20 C -0.15 -1.77 10.57 -38.94 -0.41 -2.18 16 21 C 0.08 0.70 7.08 -82.51 -0.58 0.12 16 22 C -0.13 -0.95 6.42 -37.01 -0.24 -1.19 16 23 C -0.13 -0.76 10.08 -40.86 -0.41 -1.17 16 24 C -0.13 -0.66 10.16 -41.31 -0.42 -1.08 16 25 C -0.22 -1.10 11.22 29.12 0.33 -0.77 16 26 S 0.17 1.12 23.11 -107.50 -2.48 -1.36 16 27 N -0.37 -3.08 6.88 33.25 0.23 -2.85 16 28 H 0.45 2.02 8.81 -190.45 -1.68 0.35 16 29 N -0.24 -2.70 11.88 33.36 0.40 -2.30 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.86 6.57 -51.93 -0.34 0.52 16 32 H 0.04 0.51 6.29 -51.93 -0.33 0.19 16 33 H 0.36 8.34 3.63 -40.82 -0.15 8.20 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 36 H 0.07 1.18 6.29 -51.93 -0.33 0.85 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.41 5.28 6.29 -40.82 -0.26 5.03 16 39 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.14 0.48 7.90 -52.49 -0.41 0.06 16 41 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 42 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -34.21 365.44 -9.47 -43.68 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.35 Total: 10.35 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.38 Total: -4.15 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.87 Total: -61.77 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.21 -9.47 -43.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700420505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.057 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds