Wall clock time and date at job start Tue Mar 31 2020 17:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 5 5 N 1.46510 * 109.46916 * 295.00219 * 4 2 1 6 6 C 1.36928 * 119.99875 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99601 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00423 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47012 * 60.00230 * 10 8 6 12 12 H 1.48501 * 109.47294 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47472 * 300.00041 * 10 8 6 14 14 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 15 15 N 1.46499 * 109.47198 * 65.00035 * 14 2 1 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 2 17 17 O 1.21723 * 120.00180 * 359.72124 * 16 15 14 18 18 C 1.46438 * 119.99533 * 179.72457 * 16 15 14 19 19 C 1.36656 * 125.17218 * 179.71754 * 18 16 15 20 20 C 1.36817 * 114.71674 * 179.85375 * 19 18 16 21 21 C 1.36448 * 114.78353 * 0.43217 * 20 19 18 22 22 C 1.47812 * 125.15517 * 179.72740 * 21 20 19 23 23 C 1.41061 * 126.06875 * 179.72861 * 22 21 20 24 24 C 1.35007 * 107.83537 * 179.88709 * 23 22 21 25 25 N 1.35080 * 108.04286 * 0.38081 * 24 23 22 26 26 H 0.97001 * 125.91270 * 179.76101 * 25 24 23 27 27 N 1.31831 * 126.06688 * 0.04824 * 22 21 20 28 28 S 1.75835 * 109.69933 * 359.76425 * 21 20 19 29 29 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.46949 * 299.99844 * 1 2 3 31 31 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 32 32 H 1.09007 * 109.47047 * 54.99633 * 4 2 1 33 33 H 1.09000 * 109.47450 * 175.00009 * 4 2 1 34 34 H 0.96994 * 119.99660 * 359.97438 * 5 4 2 35 35 H 0.97003 * 119.99727 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.46730 * 304.99822 * 14 2 1 37 37 H 1.08998 * 109.46846 * 185.00367 * 14 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 15 14 2 39 39 H 1.07997 * 122.63941 * 0.02562 * 19 18 16 40 40 H 1.08007 * 122.60954 * 180.19705 * 20 19 18 41 41 H 1.07993 * 126.08037 * 0.02562 * 23 22 21 42 42 H 1.08003 * 125.97315 * 180.13584 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0352 2.4424 6 6 2.0010 -0.4210 3.6855 7 1 2.5614 -1.3387 3.7865 8 6 1.6342 0.2960 4.8161 9 7 0.9509 1.4143 4.6931 10 14 2.1091 -0.3266 6.5119 11 1 3.5881 -0.4181 6.6094 12 1 1.6028 0.6133 7.5441 13 1 1.5146 -1.6698 6.7306 14 6 2.0401 -0.7212 -1.2493 15 7 1.6525 0.0355 -2.4424 16 6 1.9913 -0.4161 -3.6662 17 8 2.6236 -1.4500 -3.7800 18 6 1.5987 0.3371 -4.8591 19 6 1.8894 -0.0189 -6.1460 20 6 1.4144 0.8406 -7.0986 21 6 0.7357 1.9184 -6.6092 22 6 0.1328 2.9892 -7.4306 23 6 -0.5767 4.1080 -6.9460 24 6 -0.9603 4.8466 -8.0090 25 7 -0.5252 4.2271 -9.1277 26 1 -0.6620 4.5340 -10.0377 27 7 0.1576 3.0651 -8.7465 28 16 0.6879 1.8413 -4.8532 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7199 1.2950 33 1 3.1264 -0.7996 1.2055 34 1 1.1489 0.8592 2.3518 35 1 0.6942 1.9152 5.4832 36 1 1.6054 -1.7198 -1.2952 37 1 3.1264 -0.7994 -1.2056 38 1 1.1483 0.8592 -2.3517 39 1 2.4476 -0.9102 -6.3918 40 1 1.5681 0.6806 -8.1557 41 1 -0.7755 4.3345 -5.9090 42 1 -1.5206 5.7691 -7.9715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:07 Heat of formation + Delta-G solvation = 75.926200 kcal Electronic energy + Delta-G solvation = -24252.082509 eV Core-core repulsion = 20553.559621 eV Total energy + Delta-G solvation = -3698.522888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56820 -39.86158 -37.75321 -36.71204 -34.39276 -32.92291 -32.47086 -30.54673 -30.20499 -29.30571 -26.76543 -25.81959 -24.81978 -22.71646 -22.20063 -21.38658 -21.08076 -20.19126 -18.96178 -18.79647 -17.94338 -17.00153 -16.33803 -15.83042 -15.59047 -15.26165 -15.17513 -14.52690 -14.36514 -14.25177 -14.07877 -13.77479 -13.63277 -13.22195 -13.06197 -12.87889 -12.59659 -12.55279 -12.29989 -12.04181 -11.48602 -11.15382 -11.05722 -10.90221 -10.70400 -10.58951 -10.56639 -10.44232 -10.20712 -9.99377 -9.66520 -9.39369 -9.15175 -8.91779 -8.86158 -8.59961 -6.91282 -5.75904 -3.04222 -0.11123 0.97640 1.37389 1.45703 1.88678 2.35028 2.67130 3.04923 3.08915 3.45701 3.49875 3.50977 3.96137 4.28883 4.60109 4.63578 4.69737 4.98569 5.04203 5.10351 5.21310 5.23899 5.33158 5.38132 5.58757 5.67428 5.75158 5.80795 5.96144 5.97238 6.00331 6.02001 6.10467 6.22865 6.37824 6.43403 6.65820 6.69306 6.77804 6.87161 7.04083 7.35879 7.71248 8.04579 8.43281 9.54496 10.11741 10.46650 11.47015 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.001893 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.091752 B =14784.930120 C =15960.376300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.719 5.719 16 C 0.587 3.413 17 O -0.528 6.528 18 C -0.247 4.247 19 C -0.059 4.059 20 C -0.115 4.115 21 C -0.108 4.108 22 C 0.140 3.860 23 C -0.260 4.260 24 C 0.066 3.934 25 N -0.472 5.472 26 H 0.443 0.557 27 N -0.272 5.272 28 S 0.202 5.798 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 7.360 -29.992 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.372 3.628 17 O -0.407 6.407 18 C -0.369 4.369 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.229 4.229 22 C -0.025 4.025 23 C -0.289 4.289 24 C -0.081 4.081 25 N -0.181 5.181 26 H 0.287 0.713 27 N -0.098 5.098 28 S 0.469 5.531 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.647 6.929 -29.793 30.939 hybrid contribution -0.009 0.209 0.118 0.240 sum -4.656 7.138 -29.674 30.874 Atomic orbital electron populations 1.21806 0.94609 1.02059 1.01525 1.21571 0.96789 1.00575 0.94134 0.90437 1.20575 0.96659 0.94219 0.85299 1.42323 1.66969 1.27662 1.00550 1.19196 1.28762 1.05403 0.83669 0.91189 1.24735 1.01041 0.97411 0.97853 1.69650 1.43537 1.16571 1.28588 0.86249 0.78015 0.77691 0.84121 1.21280 1.21721 1.21275 1.21495 1.00442 0.95285 0.82431 1.45960 1.57552 1.27692 1.05838 1.16882 0.79568 0.84407 0.81931 1.90848 1.39998 1.23557 1.86266 1.24645 1.11670 1.02350 0.98244 1.20512 0.98513 1.00447 0.89754 1.20484 0.99341 0.93376 1.01574 1.22451 1.06192 0.98277 0.95996 1.19650 0.98237 0.94075 0.90563 1.21594 1.09312 0.97499 1.00544 1.22560 0.99877 0.99384 0.86269 1.46341 1.44091 1.18728 1.08930 0.71280 1.77651 1.17146 1.02609 1.12377 1.84010 1.50651 1.18394 1.00027 0.92690 0.91014 0.93975 0.95917 0.96049 0.78197 0.93498 0.90928 0.90921 0.76761 0.82627 0.83000 0.82907 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.19 5.33 -59.90 -0.32 -18.51 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 15 N -0.72 -8.91 5.28 -61.69 -0.33 -9.24 16 16 C 0.59 8.00 7.78 -12.96 -0.10 7.89 16 17 O -0.53 -8.94 16.81 5.17 0.09 -8.85 16 18 C -0.25 -2.78 6.43 -36.85 -0.24 -3.01 16 19 C -0.06 -0.61 9.88 -40.67 -0.40 -1.01 16 20 C -0.11 -1.08 10.07 -40.74 -0.41 -1.49 16 21 C -0.11 -1.04 6.48 -36.31 -0.24 -1.28 16 22 C 0.14 1.32 7.08 -82.88 -0.59 0.74 16 23 C -0.26 -1.88 10.57 -39.66 -0.42 -2.30 16 24 C 0.07 0.31 11.96 -17.27 -0.21 0.11 16 25 N -0.47 -2.65 7.35 30.41 0.22 -2.43 16 26 H 0.44 0.95 8.96 -182.62 -1.64 -0.69 16 27 N -0.27 -2.55 12.69 33.36 0.42 -2.12 16 28 S 0.20 1.79 22.11 -107.50 -2.38 -0.58 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 31 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.40 4.17 6.74 -40.82 -0.27 3.89 16 39 H 0.16 1.50 8.03 -52.49 -0.42 1.08 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.18 0.13 8.06 -52.48 -0.42 -0.29 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -35.11 375.46 -10.42 -45.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.71 Total: 6.96 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.78 Total: -6.52 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.73 Total: -59.61 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.11 -10.42 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.457 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds