Wall clock time and date at job start Tue Mar 31 2020 17:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21728 * 119.99674 * 0.02562 * 16 15 14 18 18 C 1.46434 * 120.00524 * 179.97438 * 16 15 14 19 19 C 1.36658 * 125.17936 * 179.71886 * 18 16 15 20 20 C 1.36817 * 114.71729 * 179.85705 * 19 18 16 21 21 C 1.36446 * 114.78181 * 0.43567 * 20 19 18 22 22 C 1.47811 * 125.14954 * 179.72511 * 21 20 19 23 23 C 1.41059 * 126.06746 * 179.73306 * 22 21 20 24 24 C 1.35014 * 107.83887 * 179.88853 * 23 22 21 25 25 N 1.35089 * 108.03714 * 0.37402 * 24 23 22 26 26 H 0.96998 * 125.90727 * 179.76210 * 25 24 23 27 27 N 1.31835 * 126.07062 * 0.04896 * 22 21 20 28 28 S 1.75835 * 109.70372 * 359.76529 * 21 20 19 29 29 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 37 37 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 38 38 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 39 39 H 1.07999 * 122.63569 * 0.02562 * 19 18 16 40 40 H 1.08004 * 122.60529 * 180.20277 * 20 19 18 41 41 H 1.08001 * 126.07991 * 0.02562 * 23 22 21 42 42 H 1.08004 * 125.97658 * 180.13735 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6280 -1.4472 3.7798 18 6 1.6088 0.3433 4.8585 19 6 1.8948 -0.0155 6.1458 20 6 1.4322 0.8516 7.0976 21 6 0.7524 1.9286 6.6082 22 6 0.1513 3.0005 7.4295 23 6 -0.5502 4.1240 6.9444 24 6 -0.9391 4.8596 8.0077 25 7 -0.5005 4.2422 9.1264 26 1 -0.6341 4.5510 10.0361 27 7 0.1806 3.0792 8.7452 28 16 0.6986 1.8479 4.8525 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8593 -2.3518 35 1 0.7072 1.9230 -5.4823 36 1 1.6054 -1.7197 1.2953 37 1 3.1263 -0.7993 1.2057 38 1 1.1483 0.8592 2.3518 39 1 2.4453 -0.9115 6.3920 40 1 1.5894 0.6936 8.1544 41 1 -0.7439 4.3538 5.9071 42 1 -1.4992 5.7823 7.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:10 Heat of formation + Delta-G solvation = 75.711558 kcal Electronic energy + Delta-G solvation = -24251.860160 eV Core-core repulsion = 20553.327964 eV Total energy + Delta-G solvation = -3698.532196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56749 -39.86228 -37.75407 -36.71394 -34.39583 -32.92330 -32.47365 -30.54653 -30.20800 -29.30675 -26.76657 -25.82202 -24.82308 -22.72095 -22.20275 -21.38705 -21.08141 -20.19308 -18.96285 -18.79637 -17.94414 -17.00588 -16.33917 -15.83212 -15.59119 -15.26421 -15.17436 -14.52790 -14.36621 -14.25192 -14.07839 -13.77329 -13.64362 -13.22023 -13.06133 -12.87573 -12.60240 -12.55317 -12.30172 -12.05008 -11.48636 -11.15428 -11.05993 -10.92272 -10.71830 -10.58903 -10.56565 -10.44145 -10.18082 -9.96138 -9.67734 -9.39397 -9.15267 -8.91836 -8.87520 -8.59999 -6.91475 -5.76611 -3.04848 -0.11178 0.97598 1.37331 1.45631 1.88622 2.35000 2.67086 3.04837 3.08833 3.44220 3.50273 3.52302 3.96094 4.28875 4.59691 4.63503 4.69693 4.98530 5.04032 5.10300 5.21142 5.23855 5.33097 5.37953 5.58447 5.67373 5.75099 5.80693 5.96025 5.97016 6.00286 6.01926 6.10264 6.22671 6.37611 6.43241 6.65606 6.69265 6.77541 6.86954 7.04079 7.35753 7.71918 8.04503 8.42628 9.54008 10.11265 10.46040 11.46470 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.001894 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.807196 B =14782.929655 C =15957.228333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.719 5.719 16 C 0.587 3.413 17 O -0.528 6.528 18 C -0.247 4.247 19 C -0.059 4.059 20 C -0.115 4.115 21 C -0.108 4.108 22 C 0.140 3.860 23 C -0.260 4.260 24 C 0.066 3.934 25 N -0.472 5.472 26 H 0.443 0.557 27 N -0.272 5.272 28 S 0.202 5.798 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 7.316 30.037 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.372 3.628 17 O -0.407 6.407 18 C -0.369 4.369 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.229 4.229 22 C -0.025 4.025 23 C -0.289 4.289 24 C -0.081 4.081 25 N -0.181 5.181 26 H 0.287 0.713 27 N -0.098 5.098 28 S 0.469 5.531 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.605 6.867 29.845 30.969 hybrid contribution -0.011 0.240 -0.123 0.270 sum -4.617 7.107 29.722 30.907 Atomic orbital electron populations 1.21805 0.94605 1.02061 1.01526 1.21573 0.96795 1.00573 0.94134 0.90440 1.20572 0.96657 0.94229 0.85293 1.42344 1.66808 1.27786 1.00597 1.19293 1.28544 1.05376 0.83671 0.91069 1.24738 1.01085 0.97408 0.97871 1.69668 1.43736 1.16541 1.28366 0.86106 0.77594 0.77826 0.84617 1.20537 1.21901 1.21899 1.21492 1.00439 0.95290 0.82430 1.45956 1.57463 1.27763 1.05854 1.16882 0.79558 0.84419 0.81932 1.90850 1.39992 1.23580 1.86254 1.24644 1.11772 1.02253 0.98237 1.20513 0.98542 1.00414 0.89753 1.20483 0.99424 0.93286 1.01581 1.22450 1.06127 0.98327 0.96006 1.19650 0.98311 0.94005 0.90563 1.21597 1.09399 0.97429 1.00521 1.22565 0.99840 0.99431 0.86260 1.46342 1.44006 1.18784 1.08956 0.71281 1.77650 1.17214 1.02522 1.12395 1.84012 1.50528 1.18499 1.00052 0.92686 0.93972 0.91015 0.95900 0.96046 0.78199 0.93598 0.90924 0.90925 0.76762 0.82626 0.82999 0.82907 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.19 5.33 -59.91 -0.32 -18.51 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 C 0.13 1.75 5.06 -4.05 -0.02 1.73 16 15 N -0.72 -8.90 5.28 -61.70 -0.33 -9.23 16 16 C 0.59 7.99 7.78 -12.96 -0.10 7.89 16 17 O -0.53 -8.93 16.81 5.16 0.09 -8.85 16 18 C -0.25 -2.78 6.43 -36.85 -0.24 -3.01 16 19 C -0.06 -0.61 9.88 -40.67 -0.40 -1.01 16 20 C -0.11 -1.08 10.07 -40.74 -0.41 -1.49 16 21 C -0.11 -1.04 6.48 -36.31 -0.24 -1.28 16 22 C 0.14 1.32 7.08 -82.88 -0.59 0.74 16 23 C -0.26 -1.88 10.57 -39.66 -0.42 -2.30 16 24 C 0.07 0.31 11.97 -17.26 -0.21 0.11 16 25 N -0.47 -2.65 7.35 30.42 0.22 -2.43 16 26 H 0.44 0.95 8.96 -182.63 -1.64 -0.69 16 27 N -0.27 -2.55 12.69 33.36 0.42 -2.12 16 28 S 0.20 1.79 22.11 -107.50 -2.38 -0.58 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 31 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.40 4.16 6.74 -40.82 -0.27 3.89 16 39 H 0.16 1.50 8.03 -52.49 -0.42 1.08 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.18 0.13 8.06 -52.48 -0.42 -0.29 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -35.16 375.46 -10.42 -45.58 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.71 Total: 6.87 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.78 Total: -6.49 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.73 Total: -59.59 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.16 -10.42 -45.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.290 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds