Wall clock time and date at job start Tue Mar 31 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00395 * 2 1 4 4 C 1.52996 * 109.46855 * 270.00035 * 3 2 1 5 5 C 1.53003 * 109.47161 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47437 * 179.97438 * 5 4 3 7 7 C 1.36931 * 120.00383 * 179.97438 * 6 5 4 8 8 H 1.08009 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00450 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00220 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99861 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47378 * 89.99066 * 11 9 7 13 13 H 1.48501 * 109.47048 * 209.99811 * 11 9 7 14 14 H 1.48508 * 109.46715 * 329.99158 * 11 9 7 15 15 C 1.34783 * 119.99801 * 179.97438 * 2 1 3 16 16 O 1.21730 * 119.99618 * 173.94975 * 15 2 1 17 17 C 1.46428 * 120.00130 * 354.22363 * 15 2 1 18 18 C 1.36657 * 125.18027 * 172.26276 * 17 15 2 19 19 C 1.36816 * 114.72197 * 179.97438 * 18 17 15 20 20 C 1.36453 * 114.78071 * 359.97438 * 19 18 17 21 21 C 1.47806 * 125.15017 * 179.97438 * 20 19 18 22 22 C 1.41057 * 126.06881 * 179.72080 * 21 20 19 23 23 C 1.35012 * 107.84056 * 179.82750 * 22 21 20 24 24 N 1.35090 * 108.03611 * 0.42621 * 23 22 21 25 25 H 0.97007 * 125.91127 * 179.68418 * 24 23 22 26 26 N 1.31837 * 126.06666 * 0.02826 * 21 20 19 27 27 S 1.75833 * 109.69856 * 359.76329 * 20 19 18 28 28 H 1.08994 * 109.47051 * 263.98874 * 1 2 3 29 29 H 1.09000 * 109.46570 * 23.99072 * 1 2 3 30 30 H 1.09001 * 109.46650 * 143.98657 * 1 2 3 31 31 H 1.09004 * 109.47108 * 29.99529 * 3 2 1 32 32 H 1.09001 * 109.47479 * 149.99760 * 3 2 1 33 33 H 1.08997 * 109.47505 * 299.99572 * 4 3 2 34 34 H 1.09001 * 109.47302 * 59.99617 * 4 3 2 35 35 H 1.09004 * 109.47274 * 299.99783 * 5 4 3 36 36 H 1.09001 * 109.47006 * 59.99826 * 5 4 3 37 37 H 0.96998 * 119.99797 * 0.02562 * 6 5 4 38 38 H 0.96998 * 120.00262 * 180.02562 * 10 9 7 39 39 H 1.08005 * 122.63330 * 359.97438 * 18 17 15 40 40 H 1.07994 * 122.61088 * 180.02562 * 19 18 17 41 41 H 1.07994 * 126.08360 * 359.97438 * 22 21 20 42 42 H 1.08003 * 125.98006 * 180.19470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4426 6 7 3.4619 3.4582 -2.8238 7 6 4.1342 4.6245 -3.0741 8 1 4.4846 5.2327 -2.2532 9 6 4.3666 5.0246 -4.3828 10 7 5.0124 6.1459 -4.6233 11 14 3.7614 3.9724 -5.8026 12 1 2.3881 4.3928 -6.1802 13 1 4.6685 4.1417 -6.9661 14 1 3.7465 2.5458 -5.3901 15 6 2.1389 -1.1673 0.0005 16 8 3.3511 -1.1702 -0.1106 17 6 1.4123 -2.4321 0.1287 18 6 1.9646 -3.6747 -0.0074 19 6 1.0874 -4.7118 0.1565 20 6 -0.1960 -4.3376 0.4298 21 6 -1.3251 -5.2662 0.6474 22 6 -2.6567 -4.9013 0.9362 23 6 -3.3789 -6.0353 1.0596 24 7 -2.5480 -7.0832 0.8687 25 1 -2.7965 -8.0202 0.9042 26 7 -1.2653 -6.5827 0.6117 27 16 -0.3019 -2.5835 0.4898 28 1 -0.3633 -0.1076 1.0220 29 1 -0.3632 0.9389 -0.4178 30 1 -0.3633 -0.8313 -0.6043 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1383 0.5139 33 1 3.0416 0.9506 -1.9563 34 1 1.5002 1.8406 -1.9563 35 1 2.6277 3.7951 -0.9289 36 1 4.1695 2.9056 -0.9286 37 1 3.1469 2.9121 -3.5610 38 1 5.1745 6.4257 -5.5378 39 1 3.0112 -3.8260 -0.2271 40 1 1.3876 -5.7461 0.0767 41 1 -3.0324 -3.8939 1.0380 42 1 -4.4352 -6.0945 1.2769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754377611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:22 Heat of formation + Delta-G solvation = 68.393515 kcal Electronic energy + Delta-G solvation = -24581.778249 eV Core-core repulsion = 20882.928719 eV Total energy + Delta-G solvation = -3698.849530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04128 -41.07381 -38.52822 -37.53277 -36.54532 -34.24663 -33.43116 -32.22067 -31.01146 -30.03050 -28.25015 -27.39801 -25.87288 -24.25955 -22.92838 -22.61438 -21.91027 -21.38046 -19.66249 -19.35080 -19.17312 -18.79453 -17.37249 -16.76738 -16.69806 -16.54594 -16.19587 -15.80437 -15.72493 -15.47436 -14.86870 -14.78938 -14.52298 -14.47307 -14.28295 -14.08681 -13.84700 -13.67929 -13.61651 -13.42421 -13.01290 -12.81828 -12.77338 -12.49370 -12.05711 -11.97054 -11.84019 -11.80186 -11.55246 -11.21518 -11.15399 -10.97994 -9.94937 -9.84238 -9.47436 -9.31490 -9.21186 -8.04137 -5.37914 -0.86176 0.33140 0.75168 0.82774 1.25996 1.36485 1.40236 1.47546 1.83074 1.97200 1.99098 2.19569 2.47183 3.26862 3.42322 3.50476 3.60915 3.85183 4.04182 4.07266 4.22434 4.25438 4.33111 4.38175 4.52479 4.54839 4.59822 4.71243 4.74250 4.79320 4.81615 4.89441 5.00231 5.11524 5.25014 5.27020 5.30123 5.45300 5.49248 5.74084 6.20015 6.21411 6.38667 6.57501 6.97438 7.06064 7.82581 8.01340 9.17247 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.001990 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.532865 B =14064.961329 C =14230.864227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.607 5.607 3 C 0.128 3.872 4 C -0.129 4.129 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.238 4.238 8 H 0.058 0.942 9 C -0.065 4.065 10 N -0.982 5.982 11 Si 0.957 3.043 12 H -0.271 1.271 13 H -0.294 1.294 14 H -0.260 1.260 15 C 0.579 3.421 16 O -0.572 6.572 17 C -0.286 4.286 18 C -0.061 4.061 19 C -0.132 4.132 20 C -0.138 4.138 21 C 0.116 3.884 22 C -0.281 4.281 23 C 0.084 3.916 24 N -0.464 5.464 25 H 0.456 0.544 26 N -0.315 5.315 27 S 0.302 5.698 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.017 0.983 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.169 0.831 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.366 -28.951 16.297 42.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.338 5.338 3 C 0.005 3.995 4 C -0.168 4.168 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.369 4.369 8 H 0.076 0.924 9 C -0.256 4.256 10 N -0.633 5.633 11 Si 0.784 3.216 12 H -0.197 1.197 13 H -0.221 1.221 14 H -0.185 1.185 15 C 0.368 3.632 16 O -0.454 6.454 17 C -0.407 4.407 18 C -0.095 4.095 19 C -0.164 4.164 20 C -0.258 4.258 21 C -0.048 4.048 22 C -0.310 4.310 23 C -0.063 4.063 24 N -0.175 5.175 25 H 0.303 0.697 26 N -0.141 5.141 27 S 0.571 5.429 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -26.138 -28.740 16.448 42.187 hybrid contribution 1.090 -1.135 -1.328 2.059 sum -25.049 -29.876 15.120 41.816 Atomic orbital electron populations 1.22375 0.77326 1.05508 1.04386 1.47772 1.08355 1.05238 1.72474 1.21432 0.98007 0.84211 0.95846 1.21952 1.00691 0.95934 0.98210 1.20701 0.96938 0.94274 0.85103 1.42752 1.69207 1.24879 1.03882 1.19082 1.27258 0.97710 0.92886 0.92360 1.25536 1.01299 0.98803 0.99995 1.69882 1.48160 1.25200 1.20025 0.85373 0.78051 0.79251 0.78886 1.19658 1.22110 1.18456 1.17367 0.86322 0.83312 0.76222 1.90844 1.15279 1.87366 1.51878 1.24457 1.00325 0.96868 1.19067 1.20513 1.01585 0.90095 0.97265 1.20413 0.91324 1.00852 1.03812 1.23499 0.94873 0.99957 1.07456 1.19893 0.93198 0.90501 1.01239 1.21904 0.91455 1.01593 1.16081 1.23275 0.99269 0.86022 0.97740 1.46449 1.05174 1.10314 1.55552 0.69725 1.77590 1.01557 1.10285 1.24716 1.83886 1.00818 0.94238 1.63944 0.89008 0.86415 0.90018 0.86358 0.91189 0.93930 0.90232 0.93969 0.96517 0.80253 0.93256 0.83790 0.83374 0.81352 0.75538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 8.82 127.77 1.13 1.69 16 2 N -0.61 -13.24 2.87 -851.77 -2.45 -15.69 16 3 C 0.13 3.06 5.34 86.38 0.46 3.53 16 4 C -0.13 -3.93 5.65 30.59 0.17 -3.76 16 5 C 0.16 6.09 6.26 86.38 0.54 6.63 16 6 N -0.76 -37.46 5.41 -343.44 -1.86 -39.32 16 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 9 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 10 N -0.98 -64.41 13.97 21.65 0.30 -64.11 16 11 Si 0.96 47.06 27.74 68.60 1.90 48.97 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 14 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 15 C 0.58 16.12 7.61 86.37 0.66 16.78 16 16 O -0.57 -21.26 16.47 -4.45 -0.07 -21.33 16 17 C -0.29 -6.41 6.17 24.03 0.15 -6.26 16 18 C -0.06 -1.38 9.88 21.57 0.21 -1.16 16 19 C -0.13 -2.67 10.07 21.52 0.22 -2.45 16 20 C -0.14 -2.50 6.48 24.39 0.16 -2.34 16 21 C 0.12 1.98 7.08 42.37 0.30 2.28 16 22 C -0.28 -2.89 10.57 22.22 0.23 -2.66 16 23 C 0.08 0.42 11.97 83.45 1.00 1.42 16 24 N -0.46 -3.99 7.35 -57.69 -0.42 -4.41 16 25 H 0.46 0.82 8.96 -213.33 -1.91 -1.09 16 26 N -0.31 -5.61 12.69 -48.38 -0.61 -6.22 16 27 S 0.30 4.19 17.85 -56.49 -1.01 3.18 16 28 H 0.09 0.68 7.46 -2.39 -0.02 0.67 16 29 H 0.12 0.99 8.03 -2.39 -0.02 0.97 16 30 H 0.08 0.91 5.16 -17.77 -0.09 0.82 16 31 H 0.12 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.07 1.97 7.51 -2.39 -0.02 1.95 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.36 17.21 5.53 -92.71 -0.51 16.70 16 38 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 39 H 0.14 3.40 8.04 -2.91 -0.02 3.38 16 40 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.23 -1.15 8.06 -2.91 -0.02 -1.17 16 Total: -1.00 -87.08 368.81 0.86 -86.21 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -1.49 Total: 15.82 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.57 Total: -3.09 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -5.04 Total: -129.75 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.97 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.01 Total: 3.18 kcal Total: -87.08 0.86 -86.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754377611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.606 kcal (2) G-P(sol) polarization free energy of solvation -87.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds