Wall clock time and date at job start Tue Mar 31 2020 18:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00228 * 2 1 4 4 O 1.42900 * 109.47660 * 134.99932 * 3 2 1 5 5 C 1.42899 * 114.00586 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47568 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.53866 * 307.83811 * 6 5 4 8 8 N 1.47312 * 110.72711 * 70.75054 * 6 5 4 9 9 C 1.34534 * 106.61684 * 118.36822 * 8 6 5 10 10 O 1.21542 * 123.77067 * 180.20610 * 9 8 6 11 11 N 1.33789 * 112.45729 * 0.38665 * 9 8 6 12 12 C 1.40404 * 124.17845 * 179.86370 * 11 9 8 13 13 C 1.40371 * 125.96663 * 184.69668 * 12 11 9 14 14 C 1.35243 * 107.86981 * 179.97438 * 13 12 11 15 15 C 1.50702 * 126.07463 * 180.02562 * 14 13 12 16 16 N 1.34966 * 107.85423 * 359.97438 * 14 13 12 17 17 C 1.46506 * 125.98231 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47006 * 89.99904 * 17 16 14 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 N 1.31189 * 125.96932 * 4.98111 * 12 11 9 27 27 C 1.34769 * 111.64388 * 359.59028 * 11 9 8 28 28 O 1.21238 * 127.15649 * 180.26684 * 27 11 9 29 29 H 1.08000 * 119.99910 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99801 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00283 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47208 * 14.99644 * 3 2 1 33 33 H 1.09006 * 109.47108 * 255.00021 * 3 2 1 34 34 H 1.09000 * 109.46549 * 59.99754 * 5 4 3 35 35 H 1.09003 * 109.46889 * 300.00467 * 5 4 3 36 36 H 0.96995 * 126.69361 * 298.62366 * 8 6 5 37 37 H 1.07996 * 126.07107 * 0.02562 * 13 12 11 38 38 H 1.08992 * 109.47263 * 269.97724 * 15 14 13 39 39 H 1.09003 * 109.46885 * 29.98023 * 15 14 13 40 40 H 1.08998 * 109.46800 * 149.97105 * 15 14 13 41 41 H 1.09001 * 109.47068 * 330.00568 * 17 16 14 42 42 H 1.08993 * 109.47068 * 210.00022 * 17 16 14 43 43 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9085 2.4348 1.0320 6 6 5.0105 2.2542 2.0778 7 1 4.5884 1.9137 3.0233 8 7 6.0349 1.3105 1.5979 9 6 7.1907 1.9962 1.5357 10 8 8.2445 1.5124 1.1716 11 7 7.0512 3.2692 1.9232 12 6 8.0994 4.2027 1.9570 13 6 8.0172 5.5173 2.4424 14 6 9.2351 6.0884 2.3018 15 6 9.6057 7.4957 2.6934 16 7 10.0598 5.1739 1.7495 17 6 11.4738 5.3755 1.4236 18 6 12.3222 4.9899 2.6079 19 1 11.8548 4.6302 3.5127 20 6 13.6950 5.0954 2.5360 21 7 14.2641 5.5329 1.4341 22 14 14.7467 4.6167 4.0038 23 1 16.1800 4.8212 3.6735 24 1 14.5135 3.1880 4.3349 25 1 14.3826 5.4609 5.1700 26 7 9.3253 4.0005 1.5358 27 6 5.7791 3.5462 2.2713 28 8 5.3405 4.6082 2.6582 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1160 0.2659 33 1 2.4755 1.4867 -0.9927 34 1 3.2689 3.2695 1.3191 35 1 4.3587 2.6395 0.0607 36 1 5.9013 0.3778 1.3678 37 1 7.1379 5.9887 2.8556 38 1 9.4325 8.1649 1.8507 39 1 8.9943 7.8105 3.5391 40 1 10.6585 7.5294 2.9739 41 1 11.6446 6.4243 1.1805 42 1 11.7414 4.7558 0.5679 43 1 13.7181 5.7811 0.6718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348660278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:07 Heat of formation + Delta-G solvation = 20.094400 kcal Electronic energy + Delta-G solvation = -28155.648234 eV Core-core repulsion = 24011.951427 eV Total energy + Delta-G solvation = -4143.696808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.70956 -40.54597 -38.78499 -38.58329 -36.20512 -35.29496 -34.26860 -33.69012 -31.69997 -30.94926 -29.98983 -26.88968 -26.70791 -26.30370 -24.58299 -23.78901 -22.51193 -22.08672 -20.45026 -19.77857 -19.07747 -18.03416 -17.66885 -17.17080 -16.98411 -16.68661 -16.22948 -15.99223 -15.63183 -15.32876 -15.27205 -14.62743 -14.48405 -14.20656 -13.84125 -13.81799 -13.48514 -13.33621 -12.73282 -12.70494 -12.61666 -12.47941 -12.21436 -11.92226 -11.63867 -11.49598 -11.14431 -10.96186 -10.76530 -10.73876 -10.55435 -10.38170 -10.17416 -9.85694 -9.84442 -9.66497 -9.17614 -8.60132 -8.27935 -7.79998 -6.61236 -4.37106 1.32928 1.63638 1.84533 2.39808 2.75948 2.77096 3.14793 3.35920 3.39402 3.49369 3.57234 3.58906 3.78452 4.17934 4.38881 4.39716 4.56532 4.62544 4.83770 4.85388 4.92326 5.01981 5.09736 5.10349 5.18097 5.35723 5.38794 5.64142 5.86094 5.92296 6.06044 6.09755 6.11639 6.23400 6.50272 6.54021 6.56024 6.66117 6.68011 6.92807 7.12989 7.27633 7.63629 7.69711 8.12059 8.24296 8.37539 8.55038 9.31543 10.76005 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.002366 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.850789 B =11831.761371 C =12464.307850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.153 4.153 3 C 0.089 3.911 4 O -0.379 6.379 5 C 0.064 3.936 6 C 0.104 3.896 7 H 0.140 0.860 8 N -0.719 5.719 9 C 0.693 3.307 10 O -0.498 6.498 11 N -0.484 5.484 12 C 0.253 3.747 13 C -0.286 4.286 14 C 0.100 3.900 15 C -0.090 4.090 16 N -0.309 5.309 17 C 0.247 3.753 18 C -0.616 4.616 19 H 0.060 0.940 20 C 0.027 3.973 21 N -0.900 5.900 22 Si 1.075 2.925 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.285 1.285 26 N -0.263 5.263 27 C 0.534 3.466 28 O -0.449 6.449 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.444 0.556 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.261 -4.877 -1.009 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.013 3.987 4 O -0.298 6.298 5 C -0.014 4.014 6 C -0.005 4.005 7 H 0.157 0.843 8 N -0.386 5.386 9 C 0.392 3.608 10 O -0.365 6.365 11 N -0.226 5.226 12 C 0.002 3.998 13 C -0.317 4.317 14 C -0.031 4.031 15 C -0.148 4.148 16 N -0.092 5.092 17 C 0.129 3.871 18 C -0.654 4.654 19 H 0.078 0.922 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.902 3.098 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.091 5.091 27 C 0.319 3.681 28 O -0.316 6.316 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.290 0.710 37 H 0.171 0.829 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.281 -5.590 -0.929 23.961 hybrid contribution -2.354 0.236 -0.465 2.411 sum -25.635 -5.354 -1.394 26.225 Atomic orbital electron populations 1.23872 0.95567 1.02427 0.99619 1.22716 0.95633 0.98091 1.00639 1.21591 0.88509 0.96224 0.92372 1.87852 1.44795 1.36192 1.61005 1.22573 0.91961 0.88732 0.98125 1.21922 0.89681 0.87746 1.01173 0.84259 1.45449 1.07042 1.13939 1.72220 1.15895 0.85054 0.80642 0.79180 1.91134 1.27071 1.69990 1.48352 1.42867 1.09084 1.10686 1.59975 1.18596 0.87820 0.88873 1.04512 1.20766 0.99385 0.93398 1.18134 1.21016 0.89863 0.94246 0.97969 1.20420 1.03817 0.88944 1.01648 1.49048 1.10453 1.06122 1.43571 1.19816 0.70814 0.97748 0.98691 1.22141 0.93552 1.49834 0.99909 0.92214 1.25909 0.95534 0.93926 1.02449 1.70842 1.39292 1.39822 1.03535 0.83441 0.75906 0.76647 0.73810 1.20411 1.21121 1.21110 1.77720 1.01527 1.05828 1.24015 1.20464 0.81450 0.89532 0.76605 1.90792 1.73084 1.26315 1.41393 0.87683 0.88335 0.86422 0.92295 0.91942 0.90167 0.91574 0.71016 0.82921 0.90768 0.90223 0.89652 0.93557 0.93635 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 14.31 29.02 0.42 -0.43 16 2 C -0.15 -0.88 9.89 -36.03 -0.36 -1.24 16 3 C 0.09 0.53 6.35 36.00 0.23 0.76 16 4 O -0.38 -2.86 10.33 -35.23 -0.36 -3.22 16 5 C 0.06 0.48 5.67 37.15 0.21 0.69 16 6 C 0.10 0.96 3.97 -68.21 -0.27 0.69 16 7 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 8 N -0.72 -7.79 6.25 -59.19 -0.37 -8.16 16 9 C 0.69 11.56 8.59 -88.02 -0.76 10.80 16 10 O -0.50 -10.68 16.83 5.33 0.09 -10.59 16 11 N -0.48 -8.34 2.83 -65.79 -0.19 -8.53 16 12 C 0.25 5.35 7.67 -154.18 -1.18 4.17 16 13 C -0.29 -5.57 9.89 -39.85 -0.39 -5.97 16 14 C 0.10 2.04 6.93 -82.28 -0.57 1.47 16 15 C -0.09 -1.44 9.89 36.01 0.36 -1.08 16 16 N -0.31 -7.43 3.59 -58.33 -0.21 -7.64 16 17 C 0.25 6.35 5.12 -5.19 -0.03 6.32 16 18 C -0.62 -17.28 9.39 -34.44 -0.32 -17.60 16 19 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 20 C 0.03 0.76 5.46 -17.82 -0.10 0.66 16 21 N -0.90 -26.15 13.65 55.43 0.76 -25.40 16 22 Si 1.08 24.90 29.90 -169.99 -5.08 19.82 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.26 -6.49 11.51 31.48 0.36 -6.13 16 27 C 0.53 7.19 7.59 -10.56 -0.08 7.11 16 28 O -0.45 -6.60 15.90 5.59 0.09 -6.51 16 29 H 0.10 0.39 8.06 -52.49 -0.42 -0.03 16 30 H 0.10 0.39 7.90 -52.49 -0.41 -0.03 16 31 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.06 0.29 7.86 -51.93 -0.41 -0.12 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.44 3.77 8.96 -40.82 -0.37 3.40 16 37 H 0.15 2.66 6.69 -52.49 -0.35 2.31 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 41 H 0.05 1.13 7.52 -51.93 -0.39 0.74 16 42 H 0.05 1.25 8.01 -51.93 -0.42 0.83 16 43 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -35.52 377.47 -7.70 -43.22 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.63 Total: 1.08 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.85 Total: 6.36 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.35 Total: -55.85 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.19 Total: -20.32 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.52 -7.70 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348660278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.319 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds