Wall clock time and date at job start Tue Mar 31 2020 18:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47036 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46912 * 55.00306 * 10 9 8 12 12 C 1.52991 * 109.47065 * 295.00309 * 10 9 8 13 13 C 1.53000 * 109.47115 * 174.99910 * 10 9 8 14 14 F 1.39898 * 109.46899 * 59.99872 * 13 10 9 15 15 F 1.39890 * 109.47097 * 180.02562 * 13 10 9 16 16 F 1.39902 * 109.47290 * 300.00355 * 13 10 9 17 17 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46496 * 125.97396 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47079 * 90.00325 * 19 18 2 21 21 H 1.08002 * 120.00024 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00327 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00403 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99664 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47336 * 90.00175 * 24 22 20 26 26 H 1.48497 * 109.47166 * 210.00228 * 24 22 20 27 27 H 1.48502 * 109.47033 * 330.00349 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 32 32 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 33 33 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 35 35 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 36 36 H 1.09007 * 109.47094 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47253 * 299.99788 * 12 10 9 38 38 H 1.08997 * 109.47444 * 60.00404 * 12 10 9 39 39 H 1.08997 * 109.47352 * 209.99655 * 19 18 2 40 40 H 1.09001 * 109.47699 * 330.00018 * 19 18 2 41 41 H 0.97002 * 120.00337 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9645 5.7159 0.0294 11 1 7.5449 5.3426 -0.8143 12 6 7.6859 5.3757 1.3350 13 6 6.8116 7.2337 -0.0884 14 9 6.0666 7.7127 0.9945 15 9 8.0764 7.8313 -0.0857 16 9 6.1518 7.5447 -1.2822 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8501 -2.4845 -0.0130 20 6 1.6948 -2.9550 -1.4363 21 1 1.9105 -2.2830 -2.2538 22 6 1.2773 -4.2434 -1.6948 23 7 1.1413 -4.6539 -2.9368 24 14 0.9049 -5.4060 -0.2809 25 1 -0.5259 -5.2832 0.0973 26 1 1.1879 -6.8021 -0.7003 27 1 1.7566 -5.0568 0.8845 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 0.0004 32 1 5.6588 1.0779 0.0047 33 1 6.6148 3.2074 0.0159 34 1 5.0328 5.3761 -0.8623 35 1 5.0334 5.3668 0.9177 36 1 8.6717 5.8411 1.3373 37 1 7.1055 5.7490 2.1787 38 1 7.7949 4.2945 1.4189 39 1 2.5849 -3.1072 0.4972 40 1 0.8916 -2.5586 0.5008 41 1 0.8479 -5.5604 -3.1187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360168912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:37 Heat of formation + Delta-G solvation = -106.091032 kcal Electronic energy + Delta-G solvation = -28190.000584 eV Core-core repulsion = 23498.975225 eV Total energy + Delta-G solvation = -4691.025359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.55698 -48.04252 -48.00334 -40.89008 -39.81802 -36.96317 -34.86858 -33.56134 -33.02092 -31.45250 -31.07586 -27.62045 -27.07866 -26.42836 -25.96658 -22.84549 -21.91492 -21.49196 -20.10416 -19.69717 -18.94743 -18.83228 -18.21739 -17.31225 -17.12075 -16.47567 -16.10210 -15.63674 -15.24356 -14.99213 -14.77165 -14.58389 -14.53705 -14.43525 -14.29902 -14.14323 -14.13133 -13.83729 -13.50736 -13.32758 -13.19808 -12.58005 -12.43864 -12.36709 -12.16756 -11.99736 -11.91244 -11.87319 -11.56116 -11.21409 -10.82168 -10.59771 -10.13101 -9.98009 -9.78421 -9.60497 -9.42764 -8.79603 -8.00394 -7.46865 -6.27205 -4.30437 1.97694 2.42736 2.53707 2.99536 3.13356 3.20127 3.22439 3.25771 3.38721 3.50910 3.58129 3.74128 4.11794 4.20015 4.21072 4.27951 4.46216 4.98469 5.00867 5.03580 5.17690 5.27518 5.37729 5.48808 5.61075 5.84998 6.00777 6.04181 6.12262 6.35071 6.42490 6.47270 6.58803 6.75597 6.95735 7.28104 7.42088 7.80057 7.85847 8.30517 8.46266 8.57328 8.78581 9.27960 10.85251 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031248 B = 0.001975 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.829623 B =14172.478529 C =14361.335126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 C -0.285 4.285 4 C 0.285 3.715 5 N -0.642 5.642 6 C 0.715 3.285 7 O -0.561 6.561 8 N -0.742 5.742 9 C 0.143 3.857 10 C -0.151 4.151 11 H 0.123 0.877 12 C -0.156 4.156 13 C 0.461 3.539 14 F -0.178 7.178 15 F -0.181 7.181 16 F -0.179 7.179 17 N -0.320 5.320 18 N -0.318 5.318 19 C 0.232 3.768 20 C -0.541 4.541 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.886 5.886 24 Si 0.872 3.128 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.621 21.368 8.710 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.031 3.969 5 N -0.292 5.292 6 C 0.414 3.586 7 O -0.436 6.436 8 N -0.400 5.400 9 C 0.018 3.982 10 C -0.171 4.171 11 H 0.141 0.859 12 C -0.213 4.213 13 C 0.406 3.594 14 F -0.160 7.160 15 F -0.162 7.162 16 F -0.161 7.161 17 N -0.150 5.150 18 N -0.100 5.100 19 C 0.113 3.887 20 C -0.579 4.579 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.523 5.523 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.242 0.758 33 H 0.233 0.767 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.212 20.544 8.585 25.395 hybrid contribution 0.374 -0.226 0.387 0.584 sum 12.586 20.318 8.973 25.530 Atomic orbital electron populations 1.20408 0.87835 1.04205 1.02460 1.21063 0.94927 0.86939 1.00661 1.21256 0.89644 0.99900 1.20811 1.18633 0.86561 0.89202 1.02503 1.41324 1.07670 1.03594 1.76570 1.15516 0.84524 0.80427 0.78106 1.90902 1.23394 1.73419 1.55838 1.44794 1.07935 1.05627 1.81621 1.21106 0.93543 0.78957 1.04587 1.22666 1.00729 0.89293 1.04401 0.85857 1.21920 1.00950 1.03818 0.94606 1.20261 0.73795 0.91438 0.73865 1.93204 1.77100 1.90236 1.55435 1.93191 1.40755 1.86033 1.96222 1.93222 1.81275 1.94446 1.47125 1.77246 0.99476 1.08393 1.29901 1.48492 1.01146 1.06990 1.53359 1.19983 0.95275 0.73774 0.99673 1.21188 1.47365 0.99013 0.90375 0.90097 1.24812 0.94495 0.97472 0.95768 1.69870 1.45644 1.18334 1.18475 0.86906 0.79450 0.81006 0.82802 1.19599 1.20518 1.18800 0.91079 0.89855 0.90332 0.82025 0.75820 0.76706 0.89875 0.89794 0.90771 0.90668 0.90058 0.93243 0.93649 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.14 16 2 C 0.09 1.94 6.93 -82.28 -0.57 1.38 16 3 C -0.29 -5.73 9.52 -39.84 -0.38 -6.11 16 4 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 5 N -0.64 -9.28 5.45 -15.51 -0.08 -9.37 16 6 C 0.72 9.69 8.53 -86.93 -0.74 8.95 16 7 O -0.56 -9.72 13.47 5.28 0.07 -9.65 16 8 N -0.74 -6.11 5.29 -65.22 -0.34 -6.46 16 9 C 0.14 1.07 4.82 -4.04 -0.02 1.05 16 10 C -0.15 -0.73 2.40 -90.62 -0.22 -0.95 16 11 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 12 C -0.16 -0.58 8.82 37.15 0.33 -0.26 16 13 C 0.46 3.13 2.69 37.16 0.10 3.23 16 14 F -0.18 -1.41 16.37 2.25 0.04 -1.37 16 15 F -0.18 -1.29 16.80 2.25 0.04 -1.25 16 16 F -0.18 -1.48 16.71 2.25 0.04 -1.44 16 17 N -0.32 -7.12 12.59 31.44 0.40 -6.73 16 18 N -0.32 -7.28 3.59 -58.33 -0.21 -7.49 16 19 C 0.23 5.52 4.88 -5.20 -0.03 5.50 16 20 C -0.54 -15.03 9.94 -34.44 -0.34 -15.37 16 21 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 24 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 32 H 0.41 4.51 8.84 -40.82 -0.36 4.15 16 33 H 0.40 1.95 7.67 -40.82 -0.31 1.64 16 34 H 0.08 0.73 7.66 -51.93 -0.40 0.33 16 35 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.07 0.24 7.80 -51.93 -0.41 -0.17 16 37 H 0.07 0.33 7.80 -51.93 -0.41 -0.07 16 38 H 0.08 0.23 7.18 -51.93 -0.37 -0.15 16 39 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 40 H 0.05 0.99 7.08 -51.93 -0.37 0.62 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -34.52 358.04 -6.40 -40.91 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.98 Total: 4.87 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.86 Total: 2.70 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.53 Total: -55.44 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.11 Total: -4.06 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.52 -6.40 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.177 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds