Wall clock time and date at job start Tue Mar 31 2020 17:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99606 * 2 1 4 4 C 1.50700 * 109.46900 * 274.99842 * 3 2 1 5 5 H 1.08003 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99679 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00070 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99749 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47175 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47248 * 119.99563 * 8 6 4 11 11 H 1.48494 * 109.47283 * 239.99672 * 8 6 4 12 12 S 1.65600 * 120.00079 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40190 * 203.53974 * 12 2 1 14 14 O 1.42099 * 106.40212 * 336.45815 * 12 2 1 15 15 N 1.65603 * 107.21866 * 90.00309 * 12 2 1 16 16 C 1.46930 * 120.62538 * 314.20608 * 15 12 2 17 17 C 1.52761 * 109.00436 * 233.58506 * 16 15 12 18 18 C 1.53045 * 109.38342 * 305.59015 * 17 16 15 19 19 C 1.53043 * 109.54137 * 61.23681 * 18 17 16 20 20 C 1.52994 * 109.49934 * 178.68589 * 19 18 17 21 21 C 1.53005 * 109.51889 * 58.60516 * 19 18 17 22 22 C 1.46914 * 120.63381 * 134.48223 * 15 12 2 23 23 H 1.09003 * 109.59113 * 246.15479 * 22 15 12 24 24 C 1.50706 * 109.58743 * 6.58284 * 22 15 12 25 25 O 1.20825 * 119.99897 * 52.75443 * 24 22 15 26 26 O 1.34237 * 119.99976 * 232.75802 * 24 22 15 27 27 H 1.09001 * 109.46886 * 269.99957 * 1 2 3 28 28 H 1.08995 * 109.47589 * 30.00298 * 1 2 3 29 29 H 1.08999 * 109.46684 * 150.00393 * 1 2 3 30 30 H 1.08996 * 109.47289 * 35.00222 * 3 2 1 31 31 H 1.09000 * 109.46943 * 155.00353 * 3 2 1 32 32 H 0.96997 * 119.99309 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.59068 * 353.41194 * 16 15 12 34 34 H 1.08994 * 109.58871 * 113.84598 * 16 15 12 35 35 H 1.09003 * 109.56751 * 185.55700 * 17 16 15 36 36 H 1.09004 * 109.39075 * 65.51172 * 17 16 15 37 37 H 1.09004 * 109.45698 * 301.21785 * 18 17 16 38 38 H 1.08996 * 109.46466 * 181.26651 * 18 17 16 39 39 H 1.09000 * 109.47476 * 179.84006 * 20 19 18 40 40 H 1.09000 * 109.47352 * 299.84411 * 20 19 18 41 41 H 1.09002 * 109.46982 * 59.83815 * 20 19 18 42 42 H 1.08995 * 109.46921 * 300.14497 * 21 19 18 43 43 H 1.08999 * 109.46622 * 60.14806 * 21 19 18 44 44 H 1.08995 * 109.46840 * 180.14567 * 21 19 18 45 45 H 0.96697 * 116.99653 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9281 1.1938 -2.2332 6 6 3.0005 2.9504 -1.6664 7 7 3.5032 3.6470 -0.6706 8 14 3.1795 3.5660 -3.4210 9 1 2.5321 2.6061 -4.3508 10 1 2.5286 4.8947 -3.5483 11 1 4.6205 3.6863 -3.7588 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1565 0.5450 14 8 1.4114 -2.4062 0.5455 15 7 2.5382 -1.8593 -1.5810 16 6 1.4431 -1.7756 -2.5570 17 6 1.2943 -3.1263 -3.2548 18 6 2.6406 -3.5396 -3.8539 19 6 3.6760 -3.6829 -2.7361 20 6 5.0129 -4.1278 -3.3322 21 6 3.1954 -4.7258 -1.7248 22 6 3.8531 -2.3332 -2.0336 23 1 4.2816 -1.6123 -2.7300 24 6 4.7669 -2.4977 -0.8465 25 8 4.4139 -3.1599 0.1004 26 8 5.9730 -1.9085 -0.8412 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1178 0.4343 32 1 3.9666 4.4807 -0.8473 33 1 0.5143 -1.5269 -2.0436 34 1 1.6709 -1.0083 -3.2969 35 1 0.5517 -3.0472 -4.0488 36 1 0.9736 -3.8747 -2.5300 37 1 2.9722 -2.7790 -4.5608 38 1 2.5306 -4.4925 -4.3715 39 1 5.7508 -4.2270 -2.5361 40 1 4.8863 -5.0882 -3.8320 41 1 5.3541 -3.3852 -4.0535 42 1 2.2425 -4.4089 -1.3012 43 1 3.0695 -5.6859 -2.2252 44 1 3.9322 -4.8253 -0.9277 45 1 6.5239 -2.0431 -0.0579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519741643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:32 Heat of formation + Delta-G solvation = -155.809587 kcal Electronic energy + Delta-G solvation = -30826.565746 eV Core-core repulsion = 26778.392369 eV Total energy + Delta-G solvation = -4048.173377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81650 -38.55693 -36.59625 -35.84650 -35.54380 -35.05418 -34.13670 -32.53031 -32.05920 -27.87670 -27.43373 -27.24587 -25.44072 -25.05089 -22.57959 -22.33952 -21.34853 -19.04583 -18.30500 -17.96834 -17.23602 -16.82647 -16.44525 -16.14156 -15.59215 -15.54819 -14.94117 -14.63676 -14.44380 -14.18312 -13.69611 -13.54884 -13.43620 -13.28821 -13.03009 -12.53842 -12.29615 -12.21956 -12.18126 -11.94694 -11.73133 -11.67283 -11.56630 -11.43391 -11.21985 -11.16277 -11.11584 -10.93121 -10.84870 -10.74477 -10.58400 -10.52451 -10.30073 -10.03931 -9.87960 -9.78715 -8.79728 -8.52660 -8.11723 -6.13833 -4.20649 1.14380 2.44593 3.04925 3.21892 3.29523 3.31387 3.47367 4.09008 4.33480 4.47740 4.67571 4.78479 4.94900 5.10467 5.16086 5.20167 5.21414 5.34917 5.41277 5.47878 5.57128 5.60532 5.66051 5.78455 5.83411 5.90756 5.92752 5.99488 6.00053 6.02936 6.12957 6.21680 6.25849 6.33707 6.51442 6.55031 6.65528 6.92334 7.29288 7.38928 7.57657 7.82268 8.10939 8.19330 8.83315 9.45319 10.94469 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.006076 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.020969 B = 4607.412888 C = 4944.240986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.996 5.996 3 C 0.245 3.755 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.792 3.208 13 O -0.971 6.971 14 O -0.988 6.988 15 N -0.995 5.995 16 C 0.130 3.870 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.157 4.157 22 C 0.180 3.820 23 H 0.106 0.894 24 C 0.494 3.506 25 O -0.512 6.512 26 O -0.499 6.499 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -13.244 -7.168 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.839 5.839 3 C 0.123 3.877 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.802 3.198 13 O -0.955 6.955 14 O -0.971 6.971 15 N -0.834 5.834 16 C 0.005 3.995 17 C -0.178 4.178 18 C -0.138 4.138 19 C -0.069 4.069 20 C -0.202 4.202 21 C -0.214 4.214 22 C 0.071 3.929 23 H 0.124 0.876 24 C 0.336 3.664 25 O -0.402 6.402 26 O -0.309 6.309 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.154 -13.638 -6.407 15.112 hybrid contribution 0.383 0.818 -0.736 1.165 sum -0.770 -12.820 -7.143 14.695 Atomic orbital electron populations 1.21348 0.80096 1.02131 1.01054 1.57619 1.14236 1.23504 1.88517 1.19250 0.92178 0.78572 0.97731 1.21555 1.36624 1.06833 0.92796 0.91850 1.24962 0.95138 0.96524 0.97288 1.69947 1.36748 1.15142 1.30889 0.86506 0.77969 0.78757 0.84546 1.19648 1.20954 1.20844 1.01763 0.73091 0.72411 0.72555 1.93517 1.40543 1.85435 1.76053 1.93533 1.67437 1.59851 1.76269 1.58112 1.15029 1.81297 1.28965 1.21308 0.88026 0.97608 0.92545 1.21943 0.97536 0.97887 1.00476 1.21496 0.94065 1.01898 0.96321 1.20836 0.96742 0.93209 0.96159 1.21904 0.95468 1.01814 1.01038 1.22167 1.03450 0.97152 0.98661 1.20316 0.82134 0.97860 0.92550 0.87591 1.22716 0.81438 0.75186 0.87037 1.90666 1.74506 1.39348 1.35682 1.84412 1.28642 1.69518 1.48370 0.93453 0.90390 0.92822 0.94293 0.93137 0.92614 0.90101 0.90448 0.90605 0.90693 0.91218 0.91160 0.92601 0.91671 0.91729 0.91181 0.92642 0.91013 0.72934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 9.86 59.85 0.59 2.32 16 2 N -1.00 -21.25 3.02 -123.05 -0.37 -21.63 16 3 C 0.24 6.15 5.41 -5.19 -0.03 6.12 16 4 C -0.54 -13.95 9.38 -34.44 -0.32 -14.27 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 8 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 S 2.79 60.07 4.61 -107.50 -0.50 59.58 16 13 O -0.97 -23.62 11.92 -68.54 -0.82 -24.44 16 14 O -0.99 -22.22 17.21 -57.17 -0.98 -23.21 16 15 N -0.99 -17.52 2.78 -107.95 -0.30 -17.82 16 16 C 0.13 1.85 6.40 -3.93 -0.03 1.82 16 17 C -0.14 -1.56 5.72 -26.83 -0.15 -1.71 16 18 C -0.10 -1.04 4.71 -26.69 -0.13 -1.17 16 19 C -0.07 -0.85 0.55 -154.39 -0.08 -0.94 16 20 C -0.14 -1.49 8.30 37.15 0.31 -1.18 16 21 C -0.16 -2.17 7.28 37.16 0.27 -1.90 16 22 C 0.18 2.91 2.57 -68.76 -0.18 2.73 16 23 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 24 C 0.49 8.97 3.45 36.01 0.12 9.09 16 25 O -0.51 -10.47 12.23 -26.91 -0.33 -10.80 16 26 O -0.50 -8.06 13.42 -42.48 -0.57 -8.63 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.05 0.80 6.08 -51.93 -0.32 0.48 16 30 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.11 5.59 -51.93 -0.29 0.82 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.89 6.34 -51.93 -0.33 0.56 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.61 7.41 -51.93 -0.38 0.23 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.10 5.97 -51.93 -0.31 0.79 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.12 5.72 -51.93 -0.30 0.82 16 45 H 0.41 5.04 9.10 45.56 0.41 5.46 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -34.34 357.14 -8.55 -42.89 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.06 Total: 5.38 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.28 Total: 2.55 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.06 Total: -64.04 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: -2.70 Total: -67.07 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 60.07 SS G_CDS: -0.50 Total: 59.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.34 -8.55 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519741643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.916 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds