Wall clock time and date at job start Tue Mar 31 2020 18:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.42899 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00026 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46931 * 180.02562 * 10 9 8 12 12 N 1.30259 * 125.61834 * 89.69490 * 11 10 9 13 13 C 1.34485 * 108.69646 * 179.83771 * 12 11 10 14 14 C 1.34333 * 107.66922 * 0.41934 * 13 12 11 15 15 C 1.50699 * 126.44099 * 179.76656 * 14 13 12 16 16 O 1.33967 * 125.61928 * 269.99508 * 11 10 9 17 17 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 18 18 C 1.46491 * 126.04623 * 179.87688 * 17 4 3 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 4 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 29 29 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 30 30 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 31 31 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 32 32 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 33 33 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 34 34 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 35 35 H 1.09003 * 109.46929 * 300.00471 * 10 9 8 36 36 H 1.08993 * 109.47005 * 60.00415 * 10 9 8 37 37 H 1.08003 * 126.16310 * 180.16794 * 13 12 11 38 38 H 1.08999 * 109.47018 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47270 * 300.00180 * 15 14 13 40 40 H 1.08998 * 109.47066 * 60.00169 * 15 14 13 41 41 H 1.09004 * 109.47166 * 149.71543 * 18 17 4 42 42 H 1.08994 * 109.47507 * 29.71250 * 18 17 4 43 43 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 8 5.4372 5.1209 0.0292 10 6 6.5271 6.0452 0.0367 11 6 5.9911 7.4536 0.0397 12 7 5.7120 8.1569 1.1000 13 6 5.2612 9.3628 0.7111 14 6 5.2602 9.3840 -0.6321 15 6 4.8287 10.5311 -1.5089 16 8 5.7179 8.1867 -1.0478 17 7 3.6093 -0.6405 0.0013 18 6 4.7870 -1.5116 0.0026 19 6 5.1921 -1.8109 -1.4178 20 1 4.6288 -1.3935 -2.2393 21 6 6.2856 -2.6124 -1.6685 22 7 6.6424 -2.8691 -2.9080 23 14 7.2603 -3.3338 -0.2475 24 1 6.6901 -4.6536 0.1242 25 1 8.6779 -3.5043 -0.6558 26 1 7.1877 -2.4170 0.9184 27 7 2.2731 -1.0608 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.9901 2.1596 -0.0009 32 1 5.6359 1.1294 0.0155 33 1 6.4297 3.5415 0.9182 34 1 6.4372 3.5481 -0.8617 35 1 7.1329 5.8854 0.9287 36 1 7.1401 5.8912 -0.8512 37 1 4.9516 10.1675 1.3615 38 1 4.9406 10.2501 -2.5561 39 1 3.7847 10.7703 -1.3068 40 1 5.4485 11.4026 -1.2981 41 1 4.5494 -2.4431 0.5166 42 1 5.6079 -1.0120 0.5169 43 1 7.4114 -3.4333 -3.0844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551950304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:50 Heat of formation + Delta-G solvation = 33.516141 kcal Electronic energy + Delta-G solvation = -27445.296317 eV Core-core repulsion = 23302.181520 eV Total energy + Delta-G solvation = -4143.114798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63515 -40.96528 -39.48589 -37.88818 -35.03799 -34.82372 -33.78480 -33.11207 -32.19625 -30.37427 -29.51671 -28.74105 -27.12999 -26.32309 -25.44324 -22.64388 -22.62057 -21.63649 -21.40307 -19.84055 -19.45020 -17.75503 -17.49821 -17.23084 -16.95928 -16.70228 -16.54073 -16.00863 -15.34123 -15.15007 -14.73763 -14.69678 -14.22847 -14.02375 -13.82252 -13.54712 -13.52587 -13.13338 -12.82245 -12.78929 -12.68254 -12.52888 -12.33393 -12.24780 -11.90884 -11.81783 -11.61188 -11.16839 -10.86910 -10.84434 -10.53263 -10.27288 -10.21547 -9.98342 -9.78798 -9.55345 -9.05885 -8.89094 -7.98576 -7.52135 -6.36333 -4.40943 0.98014 2.03109 2.15281 2.34972 2.57541 3.00138 3.05932 3.11763 3.15565 3.37400 3.52542 3.65558 4.05622 4.11029 4.36233 4.48170 4.61822 4.65521 4.75119 4.84367 4.90079 4.91456 4.96988 5.04753 5.17521 5.28293 5.50726 5.57905 5.71236 5.95087 6.00001 6.02610 6.09381 6.18177 6.28383 6.32503 6.48011 6.64286 6.72196 7.16896 7.39988 7.40824 7.49612 7.73803 8.13137 8.26044 8.54244 8.70301 9.18091 10.75838 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002466 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.450220 B =11352.483467 C =12884.042303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.291 4.291 4 C 0.306 3.694 5 N -0.639 5.639 6 C 0.520 3.480 7 O -0.490 6.490 8 C 0.052 3.948 9 O -0.356 6.356 10 C 0.161 3.839 11 C 0.188 3.812 12 N -0.458 5.458 13 C -0.046 4.046 14 C -0.038 4.038 15 C -0.070 4.070 16 O -0.193 6.193 17 N -0.344 5.344 18 C 0.229 3.771 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.874 3.126 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.265 1.265 27 N -0.282 5.282 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.416 0.584 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.186 0.814 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 22.517 5.976 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.323 4.323 4 C 0.084 3.916 5 N -0.287 5.287 6 C 0.305 3.695 7 O -0.362 6.362 8 C -0.028 4.028 9 O -0.273 6.273 10 C 0.084 3.916 11 C -0.019 4.019 12 N -0.188 5.188 13 C -0.185 4.185 14 C -0.092 4.092 15 C -0.127 4.127 16 O -0.080 6.080 17 N -0.129 5.129 18 C 0.110 3.890 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.125 4.125 22 N -0.519 5.519 23 Si 0.700 3.300 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.190 1.190 27 N -0.107 5.107 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.015 21.264 6.404 22.231 hybrid contribution 1.421 0.258 -0.140 1.451 sum 2.436 21.522 6.264 22.547 Atomic orbital electron populations 1.20039 0.87372 1.02648 1.02125 1.22059 0.96618 0.90923 1.01358 1.21308 0.89010 1.00590 1.21380 1.17824 0.87903 0.83010 1.02829 1.42554 1.08379 1.05219 1.72590 1.20016 0.91002 0.81304 0.77190 1.90689 1.26411 1.73410 1.45672 1.22136 0.94872 0.81787 1.03999 1.88052 1.30081 1.13521 1.95680 1.20495 0.88108 0.79162 1.03878 1.25490 1.01858 0.95757 0.78748 1.70421 1.14242 1.04007 1.30167 1.23111 1.05820 0.96521 0.93068 1.23587 1.02949 0.86912 0.95730 1.20322 1.02341 0.91473 0.98563 1.84404 1.62554 1.23297 1.37696 1.48899 1.06223 1.01928 1.55819 1.19947 0.79292 0.90043 0.99703 1.21195 1.14019 1.32827 0.90338 0.90034 1.24833 0.96621 0.95238 0.95811 1.69873 1.26682 1.36683 1.18685 0.86899 0.79952 0.80723 0.82436 1.19477 1.20501 1.19005 1.77372 0.85753 1.21698 1.25850 0.91273 0.90987 0.91361 0.81956 0.74764 0.88979 0.88769 0.88224 0.89595 0.79703 0.90173 0.89027 0.89181 0.93136 0.94267 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 2 C 0.06 1.12 7.21 -82.44 -0.59 0.52 16 3 C -0.29 -5.99 9.58 -39.78 -0.38 -6.37 16 4 C 0.31 6.33 7.66 -153.16 -1.17 5.16 16 5 N -0.64 -10.58 5.41 -11.46 -0.06 -10.64 16 6 C 0.52 8.07 7.87 -10.98 -0.09 7.98 16 7 O -0.49 -9.47 13.63 -14.36 -0.20 -9.67 16 8 C 0.05 0.54 6.42 36.01 0.23 0.77 16 9 O -0.36 -4.52 9.86 -55.14 -0.54 -5.06 16 10 C 0.16 1.48 6.56 36.00 0.24 1.71 16 11 C 0.19 2.24 7.97 -12.95 -0.10 2.14 16 12 N -0.46 -5.83 11.30 -11.10 -0.13 -5.96 16 13 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 14 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 15 C -0.07 -0.34 10.43 36.01 0.38 0.04 16 16 O -0.19 -2.27 10.77 5.37 0.06 -2.22 16 17 N -0.34 -7.82 3.60 -61.58 -0.22 -8.04 16 18 C 0.23 5.27 5.08 -5.20 -0.03 5.25 16 19 C -0.55 -14.66 9.94 -34.44 -0.34 -15.00 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 23 Si 0.87 19.16 27.47 -169.99 -4.67 14.49 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.34 6.54 56.52 0.37 -4.97 16 27 N -0.28 -6.46 12.56 33.65 0.42 -6.04 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 3.31 5.83 -52.49 -0.31 3.00 16 32 H 0.42 5.91 7.96 -40.82 -0.32 5.58 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.19 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.05 1.17 7.58 -51.93 -0.39 0.78 16 42 H 0.04 0.81 6.54 -51.93 -0.34 0.47 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -37.53 376.89 -6.55 -44.08 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.60 Total: 5.52 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.06 Total: 2.37 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.79 Total: -55.20 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.68 Total: -16.95 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.53 -6.55 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551950304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.595 kcal (2) G-P(sol) polarization free energy of solvation -37.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds