Wall clock time and date at job start Tue Mar 31 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35216 * 126.05708 * 2 1 4 4 C 1.40465 * 107.86625 * 180.16056 * 3 2 1 5 5 N 1.39926 * 125.98539 * 179.83089 * 4 3 2 6 6 C 1.34781 * 119.99654 * 359.71073 * 5 4 3 7 7 O 1.21388 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.49345 * 119.99764 * 180.02562 * 6 5 4 9 9 O 1.21355 * 120.00537 * 5.94604 * 8 6 5 10 10 N 1.34778 * 119.99917 * 185.94818 * 8 6 5 11 11 C 1.46044 * 120.07290 * 176.88208 * 10 8 6 12 12 C 1.51868 * 111.11821 * 216.83217 * 11 10 8 13 13 O 1.41195 * 113.23500 * 306.05914 * 12 11 10 14 14 C 1.42228 * 117.92121 * 47.99205 * 13 12 11 15 15 H 1.08994 * 115.54147 * 124.94839 * 14 13 12 16 16 C 1.52209 * 116.18974 * 268.62264 * 14 13 12 17 17 C 1.46379 * 120.06818 * 356.86070 * 10 8 6 18 18 H 1.09000 * 115.48135 * 23.15020 * 17 10 8 19 19 N 1.31275 * 108.03473 * 359.56498 * 4 3 2 20 20 N 1.34987 * 126.06861 * 179.68319 * 2 1 3 21 21 C 1.46505 * 125.96690 * 0.02749 * 20 2 1 22 22 C 1.50694 * 109.47434 * 269.98839 * 21 20 2 23 23 H 1.07997 * 119.99949 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00002 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00132 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00192 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46710 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47391 * 119.99769 * 26 24 22 29 29 H 1.48498 * 109.47258 * 240.00502 * 26 24 22 30 30 H 1.09002 * 109.46818 * 270.32098 * 1 2 3 31 31 H 1.08997 * 109.47353 * 30.32018 * 1 2 3 32 32 H 1.08997 * 109.46883 * 150.31884 * 1 2 3 33 33 H 1.07997 * 126.07431 * 359.97438 * 3 2 1 34 34 H 0.96997 * 120.00512 * 179.71286 * 5 4 3 35 35 H 1.09001 * 109.14804 * 96.40667 * 11 10 8 36 36 H 1.09006 * 109.14863 * 337.25513 * 11 10 8 37 37 H 1.09001 * 108.72921 * 185.09477 * 12 11 10 38 38 H 1.08992 * 108.63918 * 66.96296 * 12 11 10 39 39 H 1.09002 * 117.21842 * 1.89115 * 16 14 13 40 40 H 1.09008 * 117.62138 * 217.15513 * 16 14 13 41 41 H 1.09002 * 109.46804 * 29.99249 * 21 20 2 42 42 H 1.09003 * 109.47008 * 149.98115 * 21 20 2 43 43 H 0.96998 * 120.00048 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0931 0.0000 4 6 3.6373 0.6546 -0.0037 5 7 4.7719 1.4736 -0.0083 6 6 4.6350 2.8144 -0.0153 7 8 3.5276 3.3115 -0.0172 8 6 5.8459 3.6886 -0.0208 9 8 6.9497 3.1957 -0.1278 10 7 5.7129 5.0249 0.0932 11 6 6.8982 5.8756 0.1566 12 6 6.6862 7.0395 1.1089 13 8 5.5295 7.7946 0.8167 14 6 4.3139 7.0910 0.5925 15 1 3.4748 7.3907 1.2202 16 6 4.0127 6.7136 -0.8510 17 6 4.3799 5.6267 0.1533 18 1 3.5817 4.9657 0.4911 19 7 3.6338 -0.6581 0.0036 20 7 2.3018 -1.0911 0.0060 21 6 1.8499 -2.4847 0.0132 22 6 1.6947 -2.9552 1.4363 23 1 1.9106 -2.2833 2.2538 24 6 1.2760 -4.2432 1.6948 25 7 1.0126 -5.0613 0.6993 26 14 1.0829 -4.8263 3.4589 27 1 1.4385 -3.7226 4.3867 28 1 -0.3252 -5.2354 3.6938 29 1 1.9814 -5.9840 3.6988 30 1 -0.3633 0.0058 1.0277 31 1 -0.3634 0.8871 -0.5188 32 1 -0.3633 -0.8928 -0.5089 33 1 1.9715 2.1210 -0.0004 34 1 5.6568 1.0765 -0.0065 35 1 7.1139 6.2630 -0.8392 36 1 7.7460 5.2826 0.4998 37 1 7.5548 7.6960 1.0580 38 1 6.6024 6.6490 2.1230 39 1 4.7577 6.9780 -1.6013 40 1 2.9748 6.7644 -1.1806 41 1 0.8914 -2.5584 -0.5006 42 1 2.5845 -3.1075 -0.4974 43 1 0.7185 -5.9675 0.8812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590276740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:53 Heat of formation + Delta-G solvation = 5.467002 kcal Electronic energy + Delta-G solvation = -28388.465592 eV Core-core repulsion = 24244.134492 eV Total energy + Delta-G solvation = -4144.331099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69758 -42.02780 -40.65534 -39.59271 -37.00091 -36.11749 -35.36500 -35.07053 -33.10287 -32.67509 -30.81251 -28.83959 -27.92163 -26.77638 -25.38131 -24.72243 -23.50750 -22.68259 -21.51498 -21.36072 -20.19368 -18.99881 -18.78587 -18.58480 -17.84772 -17.52600 -17.47821 -17.12503 -16.79641 -16.45272 -16.09272 -16.05994 -15.75686 -15.44989 -15.04216 -14.83290 -14.64602 -14.34176 -13.87534 -13.82441 -13.72171 -13.51969 -13.32581 -13.15362 -12.86758 -12.68443 -12.59397 -12.44726 -12.25952 -12.19361 -12.07258 -11.91188 -11.57740 -11.44166 -10.87710 -10.74186 -10.25546 -9.76930 -9.65753 -9.24268 -8.34194 -6.51136 -0.09692 0.68030 1.05180 1.36897 1.39042 1.50276 1.60138 1.61961 2.15461 2.18155 2.34957 2.49006 2.85859 2.91890 2.96536 3.41148 3.66659 3.78369 3.82306 4.00630 4.08348 4.11339 4.28467 4.40530 4.55648 4.58858 4.68871 4.72749 4.75258 4.85402 4.88289 4.91944 4.94798 5.02039 5.08011 5.16402 5.21765 5.53028 5.69931 5.79010 5.80233 5.93551 6.21747 6.22276 6.37213 6.60435 6.63549 6.92854 7.19943 8.72528 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.002365 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.670593 B =11836.192065 C =12137.642160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.265 3.735 5 N -0.597 5.597 6 C 0.521 3.479 7 O -0.491 6.491 8 C 0.526 3.474 9 O -0.530 6.530 10 N -0.549 5.549 11 C 0.066 3.934 12 C 0.058 3.942 13 O -0.365 6.365 14 C 0.026 3.974 15 H 0.161 0.839 16 C -0.184 4.184 17 C 0.009 3.991 18 H 0.179 0.821 19 N -0.354 5.354 20 N -0.338 5.338 21 C 0.273 3.727 22 C -0.552 4.552 23 H 0.050 0.950 24 C 0.023 3.977 25 N -0.918 5.918 26 Si 0.971 3.029 27 H -0.273 1.273 28 H -0.266 1.266 29 H -0.276 1.276 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.180 0.820 34 H 0.428 0.572 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 25.596 -0.949 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.319 4.319 4 C 0.012 3.988 5 N -0.246 5.246 6 C 0.303 3.697 7 O -0.364 6.364 8 C 0.308 3.692 9 O -0.407 6.407 10 N -0.280 5.280 11 C -0.055 4.055 12 C -0.018 4.018 13 O -0.283 6.283 14 C -0.033 4.033 15 H 0.178 0.822 16 C -0.222 4.222 17 C -0.094 4.094 18 H 0.195 0.805 19 N -0.184 5.184 20 N -0.121 5.121 21 C 0.154 3.846 22 C -0.590 4.590 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.556 5.556 26 Si 0.795 3.205 27 H -0.198 1.198 28 H -0.191 1.191 29 H -0.202 1.202 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.197 0.803 34 H 0.266 0.734 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.848 24.561 -1.064 25.270 hybrid contribution 0.276 -0.798 0.528 0.996 sum 6.124 23.764 -0.536 24.546 Atomic orbital electron populations 1.20505 0.84957 1.04450 1.04149 1.21831 0.96841 0.86234 0.99102 1.21478 0.88920 1.00436 1.21060 1.19170 0.88165 0.89278 1.02233 1.42089 1.08214 1.04534 1.69795 1.20104 0.90091 0.81947 0.77589 1.90466 1.26735 1.72377 1.46859 1.19485 0.88105 0.83132 0.78487 1.90793 1.26871 1.73960 1.49044 1.46915 1.08146 1.04360 1.68606 1.22169 0.87641 0.93022 1.02645 1.22435 0.89169 0.93274 0.96937 1.87143 1.16173 1.34135 1.90853 1.23552 0.89299 0.91971 0.98441 0.82202 1.23798 1.04868 0.99865 0.93703 1.23622 0.86326 0.92314 1.07185 0.80501 1.77249 1.00400 1.09959 1.30833 1.48862 1.01569 1.07819 1.53849 1.19300 0.95056 0.72310 0.97886 1.21448 1.47420 0.98399 0.91715 0.93134 1.25722 0.93979 0.95923 1.02197 1.70003 1.45121 1.07437 1.33056 0.85308 0.78467 0.78074 0.78627 1.19773 1.19127 1.20194 0.89615 0.87035 0.91403 0.80255 0.73402 0.89644 0.87273 0.84334 0.92617 0.88497 0.84793 0.92608 0.95822 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.50 10.11 71.24 0.72 -1.78 16 2 C 0.09 3.55 6.92 41.38 0.29 3.84 16 3 C -0.29 -10.68 9.51 22.12 0.21 -10.47 16 4 C 0.26 10.42 8.10 133.40 1.08 11.50 16 5 N -0.60 -18.95 5.43 -308.88 -1.68 -20.63 16 6 C 0.52 14.42 7.77 87.24 0.68 15.10 16 7 O -0.49 -13.62 10.15 -3.36 -0.03 -13.65 16 8 C 0.53 12.92 7.73 87.24 0.67 13.59 16 9 O -0.53 -14.76 15.98 -3.26 -0.05 -14.82 16 10 N -0.55 -10.72 3.16 -804.06 -2.54 -13.26 16 11 C 0.07 0.97 6.24 86.09 0.54 1.51 16 12 C 0.06 0.68 6.91 71.61 0.49 1.17 16 13 O -0.36 -5.60 10.56 -148.07 -1.56 -7.17 16 14 C 0.03 0.36 7.10 30.34 0.22 0.57 16 15 H 0.16 1.54 8.14 -2.39 -0.02 1.53 16 16 C -0.18 -2.52 10.16 30.16 0.31 -2.21 16 17 C 0.01 0.16 5.65 44.84 0.25 0.41 16 18 H 0.18 3.47 4.91 -21.82 -0.11 3.36 16 19 N -0.35 -16.42 12.59 -54.53 -0.69 -17.11 16 20 N -0.34 -15.89 3.59 -338.44 -1.22 -17.11 16 21 C 0.27 14.16 5.99 85.63 0.51 14.67 16 22 C -0.55 -30.41 9.39 25.60 0.24 -30.17 16 23 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 24 C 0.02 1.23 5.46 84.65 0.46 1.70 16 25 N -0.92 -51.27 13.29 21.45 0.28 -50.98 16 26 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.15 7.07 -2.39 -0.02 2.13 16 33 H 0.18 5.86 5.91 -2.91 -0.02 5.85 16 34 H 0.43 12.59 8.31 -92.71 -0.77 11.82 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.60 7.23 -2.38 -0.02 1.58 16 37 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.06 2.84 7.04 -2.39 -0.02 2.82 16 42 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.81 362.52 1.42 -66.39 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.21 Total: 24.31 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.67 Total: 19.42 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -5.84 Total: -119.09 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.65 Total: -35.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -67.81 1.42 -66.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590276740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.857 kcal (2) G-P(sol) polarization free energy of solvation -67.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds