Wall clock time and date at job start Tue Mar 31 2020 18:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30496 * 125.64486 * 2 1 4 4 C 1.34129 * 109.25583 * 179.97438 * 3 2 1 5 5 C 1.34671 * 108.02106 * 0.24411 * 4 3 2 6 6 N 1.48032 * 126.59671 * 179.75668 * 5 4 3 7 7 O 1.21797 * 119.99650 * 0.02562 * 6 5 4 8 8 O 1.21795 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.35041 * 125.65273 * 179.97438 * 2 1 3 10 10 C 1.46501 * 126.39694 * 0.03523 * 9 2 1 11 11 C 1.52997 * 109.47204 * 90.00063 * 10 9 2 12 12 N 1.46892 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00250 * 189.99934 * 12 11 10 14 14 C 1.50704 * 109.47153 * 75.69208 * 13 12 11 15 15 H 1.08005 * 119.99477 * 5.06001 * 14 13 12 16 16 C 1.37870 * 120.00436 * 185.05434 * 14 13 12 17 17 N 1.31517 * 119.99643 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00475 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47289 * 90.00289 * 18 16 14 20 20 H 1.48496 * 109.47602 * 210.00578 * 18 16 14 21 21 H 1.48504 * 109.46895 * 330.00420 * 18 16 14 22 22 C 1.46900 * 110.99943 * 66.04643 * 12 11 10 23 23 C 1.50704 * 109.47115 * 195.88010 * 22 12 11 24 24 C 1.34506 * 125.79280 * 89.71749 * 23 22 12 25 25 C 1.41380 * 106.84339 * 179.89184 * 24 23 22 26 26 C 1.34510 * 106.84310 * 0.36708 * 25 24 23 27 27 O 1.34305 * 125.78789 * 270.02338 * 23 22 12 28 28 H 1.08996 * 109.47122 * 90.03064 * 1 2 3 29 29 H 1.09005 * 109.46911 * 210.01953 * 1 2 3 30 30 H 1.08998 * 109.47316 * 330.02393 * 1 2 3 31 31 H 1.07997 * 125.99273 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47138 * 209.99988 * 10 9 2 33 33 H 1.09007 * 109.47180 * 330.00053 * 10 9 2 34 34 H 1.09002 * 109.47488 * 300.00160 * 11 10 9 35 35 H 1.09007 * 109.47061 * 59.99916 * 11 10 9 36 36 H 1.09002 * 109.47437 * 195.69390 * 13 12 11 37 37 H 1.08999 * 109.47030 * 315.69497 * 13 12 11 38 38 H 0.97007 * 119.99845 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47340 * 315.87619 * 22 12 11 40 40 H 1.08998 * 109.47428 * 75.88053 * 22 12 11 41 41 H 1.08008 * 126.57928 * 0.02562 * 24 23 22 42 42 H 1.08002 * 126.58363 * 180.16839 * 25 24 23 43 43 H 1.07997 * 125.79960 * 179.75291 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 0.0006 5 6 3.5927 -0.6641 -0.0045 6 7 4.8058 -1.5125 -0.0109 7 8 5.9093 -0.9970 -0.0115 8 8 4.7004 -2.7258 -0.0156 9 7 2.2941 -1.0973 0.0005 10 6 1.8426 -2.4910 0.0004 11 6 1.6862 -2.9763 -1.4421 12 7 1.2341 -4.3739 -1.4423 13 6 1.2991 -4.9482 -2.7928 14 6 2.7330 -5.2567 -3.1390 15 1 3.5079 -5.1240 -2.3984 16 6 3.0557 -5.7084 -4.4010 17 7 2.1122 -5.8696 -5.3029 18 14 4.8330 -6.0915 -4.8299 19 1 5.1221 -7.5142 -4.5172 20 1 5.0566 -5.8475 -6.2775 21 1 5.7333 -5.2174 -4.0357 22 6 -0.1206 -4.4890 -0.8860 23 6 -0.4007 -5.9287 -0.5392 24 6 -0.1442 -6.5174 0.6427 25 6 -0.5644 -7.8626 0.5300 26 6 -1.0450 -8.0176 -0.7166 27 8 -0.9434 -6.8429 -1.3598 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4097 1.3412 0.0003 32 1 2.5771 -3.1109 0.5146 33 1 0.8837 -2.5623 0.5138 34 1 0.9518 -2.3564 -1.9565 35 1 2.6452 -2.9050 -1.9555 36 1 0.7117 -5.8658 -2.8262 37 1 0.8976 -4.2335 -3.5112 38 1 2.3393 -6.1871 -6.1910 39 1 -0.1976 -3.8773 0.0129 40 1 -0.8465 -4.1450 -1.6228 41 1 0.2961 -6.0512 1.5118 42 1 -0.5072 -8.6211 1.2967 43 1 -1.4446 -8.9317 -1.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610675072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:02 Heat of formation + Delta-G solvation = 91.190308 kcal Electronic energy + Delta-G solvation = -29306.065979 eV Core-core repulsion = 25165.452121 eV Total energy + Delta-G solvation = -4140.613858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.14199 -42.14980 -41.60549 -37.60172 -36.50725 -34.57345 -32.80699 -32.60724 -32.47364 -30.55034 -29.25322 -28.60621 -26.86328 -25.44091 -24.92329 -23.09651 -21.95726 -21.42485 -20.98025 -20.65631 -19.81011 -18.84969 -18.36200 -17.64443 -17.09470 -16.79931 -16.43453 -16.06584 -15.61267 -14.96323 -14.95670 -14.51131 -14.13850 -14.06528 -13.92763 -13.42805 -13.24574 -12.91433 -12.70612 -12.45776 -12.43051 -12.13660 -12.09043 -11.75248 -11.53637 -11.38802 -11.31377 -11.08436 -10.86538 -10.78344 -10.67414 -10.59460 -10.19553 -9.92884 -9.55217 -9.33408 -9.25655 -8.46640 -8.12934 -7.65051 -6.06451 -4.08159 0.07672 0.97881 1.67149 2.08835 2.31213 2.42003 2.96674 3.33197 3.38400 3.39097 3.46138 3.79223 4.20087 4.32807 4.41419 4.67887 4.75822 4.88287 4.92872 5.03496 5.08094 5.21341 5.28507 5.29747 5.35161 5.38122 5.43854 5.55116 5.59425 5.67078 5.93170 6.11816 6.12801 6.23709 6.27515 6.44551 6.56156 6.83646 6.96579 7.09096 7.21702 7.54065 7.67745 7.70755 7.81022 8.00116 8.35836 9.00763 9.57017 11.03803 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.004796 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.740389 B = 5837.093460 C = 7943.488609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.273 3.727 3 N -0.484 5.484 4 C 0.098 3.902 5 C 0.003 3.997 6 N 0.063 4.937 7 O -0.151 6.151 8 O -0.142 6.142 9 N -0.423 5.423 10 C 0.084 3.916 11 C 0.059 3.941 12 N -0.522 5.522 13 C 0.193 3.807 14 C -0.508 4.508 15 H 0.068 0.932 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.270 1.270 22 C 0.124 3.876 23 C 0.016 3.984 24 C -0.204 4.204 25 C -0.218 4.218 26 C -0.043 4.043 27 O -0.168 6.168 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.199 0.801 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.095 0.905 36 H 0.039 0.961 37 H -0.001 1.001 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 8.113 13.150 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 N -0.204 5.204 4 C -0.059 4.059 5 C -0.193 4.193 6 N 0.582 4.418 7 O -0.362 6.362 8 O -0.358 6.358 9 N -0.107 5.107 10 C -0.037 4.037 11 C -0.070 4.070 12 N -0.248 5.248 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.086 0.914 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.195 1.195 22 C -0.004 4.004 23 C -0.035 4.035 24 C -0.224 4.224 25 C -0.238 4.238 26 C -0.112 4.112 27 O -0.063 6.063 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.216 0.784 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.890 8.844 12.950 17.554 hybrid contribution 1.186 -1.233 -0.747 1.867 sum -6.704 7.611 12.202 15.867 Atomic orbital electron populations 1.20474 0.82948 1.05099 1.05087 1.23718 0.96305 0.80244 0.98680 1.70691 1.00443 1.27512 1.21792 1.22483 0.96357 0.89308 0.97748 1.21727 0.80477 0.91221 1.25916 1.42324 1.00526 1.00920 0.98001 1.94561 1.09950 1.77390 1.54329 1.94674 1.93206 0.94919 1.53019 1.45275 1.03432 1.09937 1.52036 1.22646 1.03003 0.76313 1.01731 1.22154 1.02713 0.89917 0.92185 1.62134 1.19432 1.14357 1.28847 1.19871 0.98555 0.94498 0.80161 1.21146 0.92684 1.43822 0.96998 0.91407 1.24962 0.97580 0.95637 0.96237 1.69962 1.32380 1.46732 1.04746 0.86530 0.84876 0.79011 0.77347 1.20487 1.21359 1.19491 1.20558 0.92360 0.87581 0.99884 1.22141 1.00219 0.92083 0.89017 1.21393 1.07279 0.94620 0.99131 1.21715 1.06371 0.97598 0.98088 1.23914 1.05901 0.88595 0.92749 1.84087 1.63203 1.18399 1.40639 0.88515 0.89704 0.87936 0.78446 0.85932 0.88245 0.95079 0.88639 0.94286 0.98345 0.92917 0.89476 0.93546 0.84035 0.84026 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.19 36.01 0.37 -0.17 16 2 C 0.27 3.07 7.90 -155.42 -1.23 1.84 16 3 N -0.48 -6.04 11.25 -10.82 -0.12 -6.16 16 4 C 0.10 1.22 11.57 -17.81 -0.21 1.02 16 5 C 0.00 0.05 7.96 -143.11 -1.14 -1.09 16 6 N 0.06 1.05 4.45 33.10 0.15 1.20 16 7 O -0.15 -2.47 19.04 -29.46 -0.56 -3.04 16 8 O -0.14 -2.64 16.98 -29.46 -0.50 -3.14 16 9 N -0.42 -5.50 2.75 -110.33 -0.30 -5.80 16 10 C 0.08 1.09 5.38 -4.04 -0.02 1.07 16 11 C 0.06 1.00 5.11 -3.83 -0.02 0.98 16 12 N -0.52 -10.03 4.37 -237.52 -1.04 -11.07 16 13 C 0.19 4.80 4.59 -4.97 -0.02 4.78 16 14 C -0.51 -14.12 8.55 -34.44 -0.29 -14.41 16 15 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.12 1.92 5.37 -4.97 -0.03 1.89 16 23 C 0.02 0.28 6.13 -35.63 -0.22 0.06 16 24 C -0.20 -3.12 10.81 -39.71 -0.43 -3.55 16 25 C -0.22 -3.12 10.91 -39.71 -0.43 -3.56 16 26 C -0.04 -0.65 12.09 29.41 0.36 -0.29 16 27 O -0.17 -3.08 9.78 5.69 0.06 -3.03 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.44 7.07 -51.93 -0.37 0.07 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.12 1.79 6.45 -51.93 -0.34 1.45 16 33 H 0.10 0.95 5.19 -51.92 -0.27 0.68 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.10 1.97 7.43 -51.92 -0.39 1.59 16 36 H 0.04 1.06 6.45 -51.93 -0.33 0.72 16 37 H 0.00 -0.03 8.00 -51.93 -0.42 -0.45 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.09 0.99 5.94 -51.93 -0.31 0.68 16 40 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 41 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 42 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -33.82 372.14 -9.75 -43.57 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.34 Total: 0.46 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.41 Total: -9.91 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.58 Total: -47.68 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.01 Total: -9.20 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.82 -9.75 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.764 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds