Wall clock time and date at job start Tue Mar 31 2020 18:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30496 * 125.64486 * 2 1 4 4 C 1.34129 * 109.25583 * 179.97438 * 3 2 1 5 5 C 1.34671 * 108.02106 * 0.24411 * 4 3 2 6 6 N 1.48032 * 126.59671 * 179.75668 * 5 4 3 7 7 O 1.21797 * 119.99650 * 0.02562 * 6 5 4 8 8 O 1.21795 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.35041 * 125.65273 * 179.97438 * 2 1 3 10 10 C 1.46501 * 126.39694 * 0.03523 * 9 2 1 11 11 C 1.52997 * 109.47204 * 90.00063 * 10 9 2 12 12 N 1.46892 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00250 * 189.99934 * 12 11 10 14 14 C 1.50704 * 109.47153 * 75.69208 * 13 12 11 15 15 H 1.08005 * 119.99477 * 5.06001 * 14 13 12 16 16 C 1.37870 * 120.00436 * 185.05434 * 14 13 12 17 17 N 1.31517 * 119.99643 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00475 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47289 * 90.00289 * 18 16 14 20 20 H 1.48496 * 109.47602 * 210.00578 * 18 16 14 21 21 H 1.48504 * 109.46895 * 330.00420 * 18 16 14 22 22 C 1.46900 * 110.99943 * 66.04643 * 12 11 10 23 23 C 1.50704 * 109.47115 * 195.88010 * 22 12 11 24 24 C 1.34506 * 125.79280 * 89.71749 * 23 22 12 25 25 C 1.41380 * 106.84339 * 179.89184 * 24 23 22 26 26 C 1.34510 * 106.84310 * 0.36708 * 25 24 23 27 27 O 1.34305 * 125.78789 * 270.02338 * 23 22 12 28 28 H 1.08996 * 109.47122 * 90.03064 * 1 2 3 29 29 H 1.09005 * 109.46911 * 210.01953 * 1 2 3 30 30 H 1.08998 * 109.47316 * 330.02393 * 1 2 3 31 31 H 1.07997 * 125.99273 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47138 * 209.99988 * 10 9 2 33 33 H 1.09007 * 109.47180 * 330.00053 * 10 9 2 34 34 H 1.09002 * 109.47488 * 300.00160 * 11 10 9 35 35 H 1.09007 * 109.47061 * 59.99916 * 11 10 9 36 36 H 1.09002 * 109.47437 * 195.69390 * 13 12 11 37 37 H 1.08999 * 109.47030 * 315.69497 * 13 12 11 38 38 H 0.97007 * 119.99845 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47340 * 315.87619 * 22 12 11 40 40 H 1.08998 * 109.47428 * 75.88053 * 22 12 11 41 41 H 1.08008 * 126.57928 * 0.02562 * 24 23 22 42 42 H 1.08002 * 126.58363 * 180.16839 * 25 24 23 43 43 H 1.07997 * 125.79960 * 179.75291 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 0.0006 5 6 3.5927 -0.6641 -0.0045 6 7 4.8058 -1.5125 -0.0109 7 8 5.9093 -0.9970 -0.0115 8 8 4.7004 -2.7258 -0.0156 9 7 2.2941 -1.0973 0.0005 10 6 1.8426 -2.4910 0.0004 11 6 1.6862 -2.9763 -1.4421 12 7 1.2341 -4.3739 -1.4423 13 6 1.2991 -4.9482 -2.7928 14 6 2.7330 -5.2567 -3.1390 15 1 3.5079 -5.1240 -2.3984 16 6 3.0557 -5.7084 -4.4010 17 7 2.1122 -5.8696 -5.3029 18 14 4.8330 -6.0915 -4.8299 19 1 5.1221 -7.5142 -4.5172 20 1 5.0566 -5.8475 -6.2775 21 1 5.7333 -5.2174 -4.0357 22 6 -0.1206 -4.4890 -0.8860 23 6 -0.4007 -5.9287 -0.5392 24 6 -0.1442 -6.5174 0.6427 25 6 -0.5644 -7.8626 0.5300 26 6 -1.0450 -8.0176 -0.7166 27 8 -0.9434 -6.8429 -1.3598 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4097 1.3412 0.0003 32 1 2.5771 -3.1109 0.5146 33 1 0.8837 -2.5623 0.5138 34 1 0.9518 -2.3564 -1.9565 35 1 2.6452 -2.9050 -1.9555 36 1 0.7117 -5.8658 -2.8262 37 1 0.8976 -4.2335 -3.5112 38 1 2.3393 -6.1871 -6.1910 39 1 -0.1976 -3.8773 0.0129 40 1 -0.8465 -4.1450 -1.6228 41 1 0.2961 -6.0512 1.5118 42 1 -0.5072 -8.6211 1.2967 43 1 -1.4446 -8.9317 -1.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610675072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:01 Heat of formation + Delta-G solvation = 70.980742 kcal Electronic energy + Delta-G solvation = -29306.942331 eV Core-core repulsion = 25165.452121 eV Total energy + Delta-G solvation = -4141.490211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16607 -43.35288 -42.79702 -39.03451 -37.78421 -35.76857 -34.74654 -33.79390 -33.45276 -31.76603 -30.64913 -29.70001 -28.44235 -26.48217 -26.31529 -24.76940 -23.04470 -22.68692 -22.38904 -21.66147 -21.08944 -20.00075 -19.57093 -18.84710 -18.66067 -18.24188 -17.67156 -17.30764 -16.77264 -16.73837 -16.23501 -15.85935 -15.53354 -15.33925 -14.73252 -14.66998 -14.38864 -14.01691 -13.78274 -13.58975 -13.57155 -13.40891 -13.35960 -13.16746 -13.01476 -12.83510 -12.74016 -12.61664 -12.56112 -12.40375 -12.15072 -11.99274 -11.69883 -11.43051 -11.21630 -10.72203 -10.63852 -10.25012 -9.37663 -9.18562 -8.25729 -6.34161 -1.13181 -0.10786 0.58870 0.88346 1.26540 1.33835 1.34257 1.46224 1.46671 1.82502 2.26866 2.34786 3.00850 3.06824 3.12915 3.35140 3.39400 3.67510 3.81722 3.84696 4.06703 4.10041 4.20719 4.26140 4.41366 4.43818 4.49318 4.58219 4.63730 4.74528 4.79038 4.95859 4.99827 5.05219 5.12531 5.16481 5.17565 5.30865 5.56846 5.59367 5.75626 5.97608 6.10727 6.21242 6.37342 6.41850 6.44258 6.81126 7.34973 8.84069 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.004796 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.740389 B = 5837.093460 C = 7943.488609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.292 3.708 3 N -0.499 5.499 4 C 0.118 3.882 5 C -0.028 4.028 6 N 0.068 4.932 7 O -0.141 6.141 8 O -0.207 6.207 9 N -0.433 5.433 10 C 0.100 3.900 11 C 0.068 3.932 12 N -0.530 5.530 13 C 0.214 3.786 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.273 1.273 22 C 0.125 3.875 23 C -0.019 4.019 24 C -0.201 4.201 25 C -0.222 4.222 26 C -0.057 4.057 27 O -0.203 6.203 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.223 0.777 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.013 0.987 37 H -0.029 1.029 38 H 0.264 0.736 39 H 0.136 0.864 40 H 0.045 0.955 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 9.297 15.022 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.030 3.970 3 N -0.219 5.219 4 C -0.039 4.039 5 C -0.224 4.224 6 N 0.580 4.420 7 O -0.359 6.359 8 O -0.408 6.408 9 N -0.118 5.118 10 C -0.021 4.021 11 C -0.061 4.061 12 N -0.255 5.255 13 C 0.088 3.912 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.570 5.570 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.198 1.198 22 C -0.001 4.001 23 C -0.069 4.069 24 C -0.221 4.221 25 C -0.241 4.241 26 C -0.124 4.124 27 O -0.100 6.100 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.240 0.760 32 H 0.123 0.877 33 H 0.162 0.838 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.031 0.969 37 H -0.012 1.012 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.063 0.937 41 H 0.182 0.818 42 H 0.188 0.812 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.043 9.929 14.846 20.019 hybrid contribution 1.458 -1.437 -1.287 2.418 sum -7.584 8.492 13.559 17.705 Atomic orbital electron populations 1.20841 0.79536 1.07408 1.06323 1.24725 0.97897 0.79198 0.95154 1.70819 1.00366 1.27849 1.22886 1.23030 0.97362 0.88706 0.94842 1.21837 0.80229 0.91394 1.28959 1.42568 1.01282 1.00866 0.97281 1.94508 1.11149 1.77132 1.53119 1.94679 1.93597 0.96149 1.56424 1.45335 1.03142 1.10172 1.53112 1.22404 1.04613 0.76350 0.98735 1.21975 1.00364 0.88948 0.94826 1.61906 1.22482 1.15817 1.25276 1.19367 0.96095 0.92991 0.82742 1.21417 0.94003 1.43387 0.96886 0.92734 1.25731 1.01363 0.95612 0.96294 1.70059 1.34164 1.47688 1.05115 0.85614 0.80245 0.78935 0.77325 1.19629 1.20372 1.19806 1.20759 0.89748 0.88127 1.01503 1.22513 1.01934 0.92741 0.89737 1.21796 1.06052 0.95083 0.99173 1.22132 1.05548 0.97938 0.98499 1.24681 1.05774 0.88640 0.93275 1.84060 1.64070 1.19745 1.42118 0.87540 0.87226 0.85859 0.76011 0.87669 0.83795 0.93895 0.93404 0.96855 1.01169 0.92711 0.84641 0.93653 0.81777 0.81155 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.19 71.24 0.73 -0.05 16 2 C 0.29 5.67 7.90 138.13 1.09 6.76 16 3 N -0.50 -11.07 11.25 -188.13 -2.12 -13.19 16 4 C 0.12 2.73 11.57 83.52 0.97 3.69 16 5 C -0.03 -0.79 7.96 127.31 1.01 0.23 16 6 N 0.07 2.33 4.45 -49.18 -0.22 2.11 16 7 O -0.14 -4.69 19.04 18.89 0.36 -4.33 16 8 O -0.21 -8.16 16.98 18.89 0.32 -7.84 16 9 N -0.43 -10.55 2.75 -502.97 -1.38 -11.93 16 10 C 0.10 2.46 5.38 86.38 0.46 2.92 16 11 C 0.07 2.30 5.11 86.30 0.44 2.74 16 12 N -0.53 -20.65 4.37 -905.36 -3.96 -24.61 16 13 C 0.21 11.11 4.59 85.56 0.39 11.50 16 14 C -0.52 -30.07 8.55 25.60 0.22 -29.85 16 15 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 16 C 0.01 0.49 5.46 84.65 0.46 0.95 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.95 46.63 29.54 68.60 2.03 48.66 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 22 C 0.13 3.74 5.37 85.56 0.46 4.20 16 23 C -0.02 -0.64 6.13 24.83 0.15 -0.49 16 24 C -0.20 -5.79 10.81 22.19 0.24 -5.55 16 25 C -0.22 -5.94 10.91 22.19 0.24 -5.70 16 26 C -0.06 -1.64 12.09 66.97 0.81 -0.84 16 27 O -0.20 -7.54 9.78 -2.56 -0.03 -7.56 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 0.53 7.07 -2.38 -0.02 0.51 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.22 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.11 3.06 6.45 -2.39 -0.02 3.04 16 33 H 0.14 2.16 5.19 -2.38 -0.01 2.15 16 34 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.05 2.08 7.43 -2.38 -0.02 2.06 16 36 H 0.01 0.76 6.45 -2.39 -0.02 0.75 16 37 H -0.03 -1.66 8.00 -2.39 -0.02 -1.68 16 38 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 39 H 0.14 2.59 5.94 -2.39 -0.01 2.57 16 40 H 0.05 1.37 8.05 -2.39 -0.02 1.35 16 41 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 42 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.23 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -78.83 372.14 4.01 -74.81 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.05 Total: 9.66 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 7.68 Total: -9.47 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -7.39 Total: -103.92 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.66 Total: -19.74 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -78.83 4.01 -74.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.793 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds