Wall clock time and date at job start Tue Mar 31 2020 18:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36791 * 120.43901 * 2 1 4 4 C 1.48258 * 120.62715 * 0.02562 * 3 2 1 5 5 N 1.30843 * 126.42589 * 359.66992 * 4 3 2 6 6 O 1.21293 * 110.07980 * 179.80803 * 5 4 3 7 7 C 1.33667 * 110.04439 * 0.45819 * 6 5 4 8 8 C 1.50694 * 126.43071 * 179.71485 * 7 6 5 9 9 C 1.52998 * 109.47467 * 270.00489 * 8 7 6 10 10 C 1.52989 * 109.47451 * 179.97438 * 9 8 7 11 11 C 1.53007 * 109.47330 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47345 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00134 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00071 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00014 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00038 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47260 * 89.99827 * 16 14 12 18 18 H 1.48507 * 109.47197 * 209.99679 * 16 14 12 19 19 H 1.48497 * 109.47168 * 329.99791 * 16 14 12 20 20 N 1.30974 * 107.14199 * 359.71697 * 7 6 5 21 21 C 1.41742 * 118.74287 * 179.97438 * 3 2 1 22 22 O 1.35082 * 120.24903 * 180.02562 * 21 3 2 23 23 N 1.32273 * 119.50207 * 0.02562 * 21 3 2 24 24 C 1.33304 * 120.85314 * 359.97438 * 23 21 3 25 25 O 1.21951 * 119.32818 * 179.72681 * 24 23 21 26 26 N 1.34517 * 121.34368 * 359.97438 * 24 23 21 27 27 C 1.46505 * 119.77848 * 179.97438 * 26 24 23 28 28 H 1.09000 * 109.47175 * 90.00043 * 1 2 3 29 29 H 1.08996 * 109.47208 * 210.00492 * 1 2 3 30 30 H 1.09000 * 109.47198 * 330.00262 * 1 2 3 31 31 H 1.09003 * 109.46782 * 30.00429 * 8 7 6 32 32 H 1.09000 * 109.47263 * 150.00189 * 8 7 6 33 33 H 1.09002 * 109.46926 * 300.00297 * 9 8 7 34 34 H 1.09000 * 109.47124 * 59.99615 * 9 8 7 35 35 H 1.08997 * 109.47427 * 299.99609 * 10 9 8 36 36 H 1.08996 * 109.47325 * 60.00210 * 10 9 8 37 37 H 1.08998 * 109.46688 * 299.99613 * 11 10 9 38 38 H 1.09000 * 109.47187 * 59.99698 * 11 10 9 39 39 H 0.97008 * 120.00311 * 180.02562 * 15 14 12 40 40 H 0.96703 * 113.99718 * 179.97438 * 22 21 3 41 41 H 1.09000 * 109.47358 * 0.02562 * 27 26 24 42 42 H 1.09000 * 109.46924 * 120.00399 * 27 26 24 43 43 H 1.08994 * 109.46790 * 239.99996 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1794 0.0000 4 6 1.4828 2.4769 0.0006 5 7 0.1855 2.6475 -0.0050 6 8 -0.0789 3.8313 0.0012 7 6 1.0468 4.5521 0.0015 8 6 1.1466 6.0557 0.0021 9 6 1.1802 6.5653 -1.4402 10 6 1.2809 8.0918 -1.4396 11 6 1.3139 8.6014 -2.8819 12 6 1.4137 10.1051 -2.8813 13 1 1.4495 10.6436 -1.9457 14 6 1.4581 10.7935 -4.0751 15 7 1.4139 10.1379 -5.2142 16 14 1.5811 12.6574 -4.0743 17 1 3.0108 13.0592 -4.0752 18 1 0.9143 13.1980 -5.2861 19 1 0.9161 13.1969 -2.8611 20 7 2.0468 3.7063 0.0010 21 6 3.6168 1.1374 0.0006 22 8 4.3316 2.2837 0.0011 23 7 4.2338 -0.0326 0.0005 24 6 3.5405 -1.1711 0.0005 25 8 4.1379 -2.2343 -0.0046 26 7 2.1953 -1.1712 0.0010 27 6 1.4678 -2.4428 0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.2826 6.4769 0.5162 32 1 2.0587 6.3591 0.5160 33 1 2.0441 6.1440 -1.9543 34 1 0.2681 6.2618 -1.9541 35 1 0.4167 8.5128 -0.9257 36 1 2.1928 8.3956 -0.9256 37 1 2.1778 8.1806 -3.3962 38 1 0.4017 8.2976 -3.3955 39 1 1.4456 10.6222 -6.0542 40 1 5.2893 2.1499 0.0018 41 1 2.1793 -3.2685 0.0001 42 1 0.8416 -2.5036 0.8906 43 1 0.8411 -2.5023 -0.8893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904901933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:22 Heat of formation + Delta-G solvation = -0.578525 kcal Electronic energy + Delta-G solvation = -27723.945444 eV Core-core repulsion = 23579.352191 eV Total energy + Delta-G solvation = -4144.593253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.49881 -43.15834 -39.96708 -38.63069 -37.37477 -36.75131 -35.90512 -35.26212 -34.15557 -32.61086 -30.77911 -30.06625 -28.71686 -27.42214 -25.79664 -24.68666 -24.13428 -23.78966 -22.38933 -21.73409 -20.93802 -19.11009 -19.06362 -18.70215 -18.34438 -17.94827 -17.88445 -16.96123 -16.53470 -16.33411 -16.18518 -15.69271 -15.55339 -15.03458 -14.96540 -14.66820 -14.60288 -14.26787 -13.99133 -13.88031 -13.65256 -13.55380 -13.47556 -13.13669 -12.93521 -12.77216 -12.39239 -12.24376 -12.19387 -12.14892 -12.09241 -11.85039 -11.47895 -11.30254 -11.29412 -11.25313 -11.18143 -10.86356 -10.50190 -9.65771 -8.15391 -6.25734 -0.67955 -0.22027 0.34951 1.07234 1.41466 1.43973 1.44724 1.55721 1.82814 1.97707 2.35774 2.41476 2.45049 2.76738 2.86683 3.18333 3.24846 3.68571 3.93419 3.97825 4.05954 4.11740 4.18872 4.29141 4.39897 4.47690 4.47885 4.66119 4.71365 4.72589 4.76506 4.87825 4.92946 4.96832 5.06900 5.18858 5.26732 5.37817 5.39520 5.62184 5.86038 5.94751 6.06839 6.31123 6.41951 6.79999 6.93554 7.10984 7.43698 8.96373 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.001959 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.030827 B =14288.557182 C =14783.505633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.292 3.708 3 C -0.216 4.216 4 C 0.234 3.766 5 N -0.385 5.385 6 O 0.070 5.930 7 C 0.208 3.792 8 C -0.021 4.021 9 C -0.105 4.105 10 C -0.096 4.096 11 C 0.018 3.982 12 C -0.538 4.538 13 H 0.065 0.935 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.963 3.037 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.259 1.259 20 N -0.483 5.483 21 C 0.491 3.509 22 O -0.417 6.417 23 N -0.642 5.642 24 C 0.649 3.351 25 O -0.569 6.569 26 N -0.514 5.514 27 C 0.044 3.956 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.060 0.940 37 H -0.015 1.015 38 H -0.009 1.009 39 H 0.261 0.739 40 H 0.430 0.570 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -22.650 15.389 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.170 3.830 3 C -0.226 4.226 4 C -0.036 4.036 5 N -0.097 5.097 6 O 0.015 5.985 7 C -0.012 4.012 8 C -0.059 4.059 9 C -0.144 4.144 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.183 1.183 20 N -0.217 5.217 21 C 0.291 3.709 22 O -0.211 6.211 23 N -0.402 5.402 24 C 0.351 3.649 25 O -0.447 6.447 26 N -0.228 5.228 27 C -0.096 4.096 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.004 0.996 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.289 0.711 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.922 -24.005 15.217 28.845 hybrid contribution 0.456 1.009 -0.725 1.324 sum -4.466 -22.997 14.492 27.546 Atomic orbital electron populations 1.21795 0.82642 1.08133 1.07121 1.21363 0.97504 0.82857 0.81308 1.16431 0.89520 0.89131 1.27558 1.22991 0.86908 0.92647 1.01028 1.74831 1.15464 0.95829 1.23619 1.85252 1.35335 1.11996 1.65936 1.29251 0.79184 0.99666 0.93052 1.20494 1.07903 0.78256 0.99266 1.21495 1.01983 0.96352 0.94562 1.21416 1.01785 0.93039 0.97106 1.19064 0.94605 0.94702 0.93537 1.21783 1.49460 0.93715 0.92664 0.91633 1.26012 0.95108 1.03762 0.95416 1.70108 1.52105 1.37573 0.97963 0.85473 0.78365 0.79484 0.77881 1.20048 1.21177 1.18335 1.72178 1.29820 0.98524 1.21130 1.20236 0.88152 0.85147 0.77406 1.85251 1.26695 1.24737 1.84404 1.69657 1.36668 0.97347 1.36563 1.17535 0.79930 0.88479 0.78920 1.90960 1.67846 1.30106 1.55745 1.46359 1.08476 1.09139 1.58861 1.22702 0.98172 0.81946 1.06789 0.85904 0.85423 0.86946 0.84978 0.85884 0.93075 0.91931 0.91379 0.92115 0.99622 0.99091 0.92994 0.71097 0.88710 0.86317 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.73 71.24 0.62 -0.37 16 2 C 0.29 4.35 6.71 41.60 0.28 4.63 16 3 C -0.22 -4.55 5.87 -20.09 -0.12 -4.67 16 4 C 0.23 5.49 7.66 137.21 1.05 6.54 16 5 N -0.38 -8.15 8.78 -59.00 -0.52 -8.67 16 6 O 0.07 1.52 11.29 74.62 0.84 2.36 16 7 C 0.21 4.68 7.75 88.35 0.68 5.37 16 8 C -0.02 -0.40 5.84 29.85 0.17 -0.23 16 9 C -0.11 -2.95 5.20 30.59 0.16 -2.79 16 10 C -0.10 -3.38 5.15 30.59 0.16 -3.22 16 11 C 0.02 0.91 4.97 29.85 0.15 1.05 16 12 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 13 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16 14 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 15 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 16 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 N -0.48 -12.46 10.20 -302.41 -3.08 -15.55 16 21 C 0.49 11.34 7.92 85.49 0.68 12.02 16 22 O -0.42 -8.62 12.01 -83.57 -1.00 -9.62 16 23 N -0.64 -17.02 10.39 -438.28 -4.55 -21.57 16 24 C 0.65 17.04 8.33 179.59 1.50 18.54 16 25 O -0.57 -18.49 16.44 -5.15 -0.08 -18.57 16 26 N -0.51 -8.43 2.98 -665.77 -1.99 -10.42 16 27 C 0.04 0.32 9.39 127.77 1.20 1.52 16 28 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.13 -0.03 6.59 -2.39 -0.02 -0.04 16 30 H 0.11 1.22 5.22 -2.39 -0.01 1.21 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 40 H 0.43 5.31 8.98 -74.06 -0.66 4.64 16 41 H 0.09 1.08 6.83 -2.39 -0.02 1.07 16 42 H 0.12 0.08 7.42 -2.39 -0.02 0.07 16 43 H 0.11 0.19 8.09 -2.39 -0.02 0.17 16 Total: -1.00 -81.78 366.80 -0.44 -82.22 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 0.41 Total: 1.64 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.23 Total: 9.18 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -9.86 Total: -112.70 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.25 Total: -25.83 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -81.78 -0.44 -82.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904901933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.646 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds