Wall clock time and date at job start Tue Mar 31 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99636 * 2 1 4 4 C 1.53007 * 109.46874 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47224 * 64.99703 * 4 3 2 6 6 C 1.46505 * 119.99619 * 90.00069 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00051 * 6 5 4 8 8 H 1.07996 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00094 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99955 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47116 * 59.99536 * 11 9 7 13 13 H 1.48500 * 109.46585 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46730 * 299.99515 * 11 9 7 15 15 C 1.34774 * 120.00119 * 269.99893 * 5 4 3 16 16 O 1.21291 * 119.99579 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00055 * 0.02562 * 15 5 4 18 18 C 1.53001 * 109.46754 * 179.97438 * 17 15 5 19 19 C 1.52998 * 108.58357 * 64.29952 * 18 17 15 20 20 C 1.53208 * 108.64239 * 182.29295 * 18 17 15 21 21 C 1.55559 * 106.23553 * 148.66130 * 20 18 17 22 22 S 1.83901 * 99.64162 * 323.01025 * 21 20 18 23 23 O 1.42106 * 111.46569 * 144.09359 * 22 21 20 24 24 O 1.42098 * 111.46660 * 283.93765 * 22 21 20 25 25 N 1.46441 * 108.64733 * 306.29910 * 18 17 15 26 26 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47250 * 300.00102 * 1 2 3 28 28 H 1.09000 * 109.47561 * 59.99795 * 1 2 3 29 29 H 1.08999 * 109.47292 * 60.00091 * 3 2 1 30 30 H 1.08995 * 109.47437 * 299.99441 * 3 2 1 31 31 H 1.09006 * 109.46834 * 304.99539 * 4 3 2 32 32 H 1.09003 * 109.46788 * 185.00226 * 4 3 2 33 33 H 1.09002 * 109.47068 * 210.00020 * 6 5 4 34 34 H 1.09001 * 109.47372 * 330.00108 * 6 5 4 35 35 H 0.97000 * 120.00333 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.46788 * 299.99564 * 17 15 5 37 37 H 1.08992 * 109.47134 * 59.99783 * 17 15 5 38 38 H 1.09001 * 109.47252 * 60.69702 * 19 18 17 39 39 H 1.08996 * 109.47439 * 180.69928 * 19 18 17 40 40 H 1.09007 * 109.47005 * 300.69849 * 19 18 17 41 41 H 1.09002 * 110.09850 * 267.85154 * 20 18 17 42 42 H 1.08998 * 110.10086 * 29.46890 * 20 18 17 43 43 H 1.08993 * 111.37386 * 80.61775 * 21 20 18 44 44 H 1.09006 * 111.36907 * 205.35791 * 21 20 18 45 45 H 0.96996 * 126.08868 * 57.13968 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2863 1.4008 -2.4148 7 6 5.7442 1.7813 -2.3845 8 1 6.3760 1.4351 -1.5799 9 6 6.2712 2.5721 -3.3834 10 7 5.5017 2.9941 -4.3630 11 14 8.0785 3.0431 -3.3463 12 1 8.9111 1.8142 -3.3847 13 1 8.3932 3.8909 -4.5242 14 1 8.3676 3.7983 -2.1008 15 6 4.0949 -0.7754 -1.3354 16 8 4.4598 -1.2888 -2.3720 17 6 3.7748 -1.6356 -0.1402 18 6 3.9901 -3.1073 -0.4989 19 6 5.4745 -3.3237 -0.7998 20 6 3.6049 -3.9673 0.7092 21 6 3.0636 -5.3075 0.1341 22 16 2.1813 -4.6722 -1.3491 23 8 2.2882 -5.5729 -2.4432 24 8 0.9475 -4.0610 -0.9982 25 7 3.2184 -3.4130 -1.7053 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6885 1.8465 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5683 0.8410 32 1 3.9784 2.1767 0.0890 33 1 4.0745 0.8459 -3.3287 34 1 3.6748 2.3027 -2.3873 35 1 5.8723 3.5507 -5.0655 36 1 4.4285 -1.3638 0.6885 37 1 2.7358 -1.4812 0.1508 38 1 6.0640 -3.0774 0.0834 39 1 5.6424 -4.3663 -1.0695 40 1 5.7748 -2.6814 -1.6277 41 1 4.4805 -4.1530 1.3312 42 1 2.8297 -3.4692 1.2915 43 1 3.8768 -5.9776 -0.1441 44 1 2.3765 -5.7894 0.8297 45 1 3.2951 -2.9641 -2.5617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931898020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:37 Heat of formation + Delta-G solvation = -168.344565 kcal Electronic energy + Delta-G solvation = -29290.190698 eV Core-core repulsion = 25241.473764 eV Total energy + Delta-G solvation = -4048.716934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16672 -39.09157 -38.43830 -37.95864 -36.84629 -36.37997 -34.75082 -32.54846 -31.68372 -30.92318 -29.51317 -28.07433 -27.04441 -25.45093 -24.43676 -23.72105 -21.41580 -20.40075 -19.79825 -18.59921 -18.42394 -17.76088 -17.60280 -17.32401 -16.86433 -16.77540 -16.66358 -16.19033 -16.09958 -15.65799 -15.26260 -15.12627 -14.53491 -14.36997 -14.06411 -13.90704 -13.60801 -13.45663 -13.41291 -13.26567 -13.13953 -13.00786 -12.99471 -12.97644 -12.65463 -12.58969 -12.47363 -12.37306 -12.12421 -12.07538 -11.75321 -11.72650 -11.59583 -11.35105 -10.61937 -10.54725 -10.26464 -10.20464 -9.32391 -8.19087 -6.34128 -0.58581 1.37762 1.42067 1.49088 1.77641 2.05332 2.34063 2.51731 2.77567 2.88836 3.10346 3.15693 3.44058 3.62529 3.82675 4.02272 4.13882 4.19851 4.23809 4.37227 4.50078 4.54292 4.60553 4.64461 4.67940 4.72760 4.77380 4.91601 4.94217 4.95610 4.98818 5.02452 5.11307 5.26351 5.30222 5.40227 5.59707 5.70032 5.90245 6.10040 6.28897 6.32523 6.74930 6.92789 7.33380 7.67455 8.87277 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004208 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.116195 B = 6651.785515 C = 7660.315339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.045 3.955 4 C 0.108 3.892 5 N -0.604 5.604 6 C 0.265 3.735 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.258 1.258 15 C 0.511 3.489 16 O -0.586 6.586 17 C -0.144 4.144 18 C 0.150 3.850 19 C -0.165 4.165 20 C -0.112 4.112 21 C -0.546 4.546 22 S 2.544 3.456 23 O -1.017 7.017 24 O -0.994 6.994 25 N -1.089 6.089 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.111 0.889 32 H 0.095 0.905 33 H -0.009 1.009 34 H 0.014 0.986 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -12.171 20.070 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.033 4.033 4 C -0.015 4.015 5 N -0.335 5.335 6 C 0.143 3.857 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.192 4.192 10 N -0.572 5.572 11 Si 0.791 3.209 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.182 1.182 15 C 0.301 3.699 16 O -0.467 6.467 17 C -0.185 4.185 18 C 0.059 3.941 19 C -0.223 4.223 20 C -0.151 4.151 21 C -0.682 4.682 22 S 2.644 3.356 23 O -1.007 7.007 24 O -0.984 6.984 25 N -0.857 5.857 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.010 0.990 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.169 0.831 42 H 0.135 0.865 43 H 0.181 0.819 44 H 0.196 0.804 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.410 -12.773 18.891 23.687 hybrid contribution 1.000 1.337 -1.268 2.096 sum -5.410 -11.436 17.623 21.693 Atomic orbital electron populations 1.22821 0.80363 1.03156 1.00343 1.87786 1.20659 1.27914 1.95524 1.23096 0.94016 0.85101 1.01040 1.21831 0.92355 1.00848 0.86478 1.48138 1.65204 1.06384 1.13743 1.18624 0.94749 0.88475 0.83833 1.21679 0.95736 1.30766 1.09199 0.92427 1.25864 1.02755 0.95923 0.94692 1.70065 1.37860 1.36347 1.12900 0.85479 0.79202 0.78034 0.78139 1.20361 1.20897 1.18222 1.21163 0.75798 0.82430 0.90484 1.90495 1.49110 1.73097 1.33998 1.22452 1.06617 0.93241 0.96183 1.20613 0.93670 0.94629 0.85149 1.22422 0.94321 1.02504 1.03088 1.22693 1.06965 0.89965 0.95486 1.30573 1.14652 1.06680 1.16259 1.06868 0.75097 0.75054 0.78540 1.93525 1.87531 1.65896 1.53783 1.93576 1.44191 1.75400 1.85190 1.55178 1.56819 1.54157 1.19539 0.89494 0.91624 0.95418 0.88886 0.95371 0.87138 0.88689 0.99042 0.96767 0.92635 0.85803 0.85458 0.89636 0.91326 0.93773 0.83127 0.86484 0.81859 0.80422 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.40 -10.75 7.42 -148.98 -1.11 -11.86 16 3 C 0.04 1.16 6.28 71.98 0.45 1.61 16 4 C 0.11 3.12 5.78 86.38 0.50 3.62 16 5 N -0.60 -24.86 2.44 -826.11 -2.02 -26.87 16 6 C 0.26 14.18 5.16 85.63 0.44 14.62 16 7 C -0.54 -30.17 9.39 25.60 0.24 -29.93 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 11 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.51 20.27 6.85 87.66 0.60 20.87 16 16 O -0.59 -28.26 11.37 -3.06 -0.03 -28.30 16 17 C -0.14 -3.74 3.19 29.85 0.10 -3.64 16 18 C 0.15 3.41 0.83 3.68 0.00 3.41 16 19 C -0.16 -3.96 8.23 71.98 0.59 -3.36 16 20 C -0.11 -1.22 5.56 31.55 0.18 -1.05 16 21 C -0.55 -5.71 7.66 72.86 0.56 -5.15 16 22 S 2.54 64.55 6.46 -56.49 -0.37 64.18 16 23 O -1.02 -34.47 18.14 -127.79 -2.32 -36.79 16 24 O -0.99 -31.03 18.14 -127.79 -2.32 -33.35 16 25 N -1.09 -32.60 5.61 -152.03 -0.85 -33.45 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 2.38 6.44 -2.38 -0.02 2.37 16 32 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 33 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 34 H 0.01 0.79 8.07 -2.39 -0.02 0.77 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.12 2.33 7.40 -2.39 -0.02 2.31 16 37 H 0.13 3.21 5.02 -2.39 -0.01 3.20 16 38 H 0.08 1.52 8.04 -2.39 -0.02 1.50 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.54 5.80 -2.38 -0.01 1.52 16 41 H 0.15 0.62 7.71 -2.39 -0.02 0.60 16 42 H 0.12 0.95 7.77 -2.39 -0.02 0.93 16 43 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.18 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.43 16.00 6.79 -93.12 -0.63 15.36 16 Total: -1.00 -88.49 368.93 -0.96 -89.46 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.37 Total: 23.17 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.37 Total: 3.73 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -2.58 Total: -116.70 kcal Atomic # 8 Polarization: -104.51 SS G_CDS: -5.78 Total: -110.29 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 64.55 SS G_CDS: -0.37 Total: 64.18 kcal Total: -88.49 -0.96 -89.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931898020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.886 kcal (2) G-P(sol) polarization free energy of solvation -88.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds