Wall clock time and date at job start Tue Mar 31 2020 18:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.89620 * 2 1 4 4 N 1.40086 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2 7 7 C 1.35315 * 107.74973 * 359.58119 * 6 4 3 8 8 C 1.50696 * 126.03898 * 180.16094 * 7 6 4 9 9 H 1.09006 * 109.46926 * 145.31215 * 8 7 6 10 10 C 1.53003 * 109.46743 * 265.30453 * 8 7 6 11 11 N 1.46499 * 109.47569 * 25.30539 * 8 7 6 12 12 C 1.34773 * 119.99858 * 155.00035 * 11 8 7 13 13 O 1.21588 * 120.00352 * 0.02562 * 12 11 8 14 14 N 1.34779 * 119.99654 * 180.02562 * 12 11 8 15 15 C 1.46505 * 119.99706 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.46828 * 324.99601 * 15 14 12 17 17 C 1.50701 * 109.46679 * 204.99809 * 15 14 12 18 18 H 1.08001 * 120.00429 * 359.97438 * 17 15 14 19 19 C 1.37877 * 119.99599 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00237 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99804 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47214 * 90.00058 * 21 19 17 23 23 H 1.48507 * 109.46962 * 210.00258 * 21 19 17 24 24 H 1.48506 * 109.47252 * 329.99763 * 21 19 17 25 25 C 1.52996 * 109.47368 * 84.99734 * 15 14 12 26 26 F 1.39901 * 109.47143 * 59.99749 * 25 15 14 27 27 F 1.39896 * 109.47122 * 179.97438 * 25 15 14 28 28 F 1.39898 * 109.47096 * 299.99863 * 25 15 14 29 29 H 1.08999 * 109.47079 * 89.97963 * 1 2 3 30 30 H 1.09000 * 109.46806 * 209.97407 * 1 2 3 31 31 H 1.08995 * 109.47246 * 329.97742 * 1 2 3 32 32 H 1.09002 * 109.47391 * 90.01945 * 5 4 3 33 33 H 1.09001 * 109.46813 * 330.02001 * 5 4 3 34 34 H 1.09004 * 109.47041 * 210.02128 * 5 4 3 35 35 H 1.07999 * 126.12286 * 179.73805 * 6 4 3 36 36 H 1.09000 * 109.47429 * 60.00564 * 10 8 7 37 37 H 1.09008 * 109.46686 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.47616 * 299.99851 * 10 8 7 39 39 H 0.96999 * 119.99717 * 335.00084 * 11 8 7 40 40 H 0.96999 * 119.99920 * 359.97438 * 14 12 11 41 41 H 0.97005 * 120.00021 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5010 -0.0003 6 6 3.6142 -0.7152 -0.0067 7 6 2.3272 -1.1330 -0.0005 8 6 1.8601 -2.5657 -0.0006 9 1 0.9472 -2.6503 0.5891 10 6 1.5819 -3.0112 -1.4377 11 7 2.8990 -3.4182 0.5825 12 6 2.5657 -4.5949 1.1489 13 8 1.4029 -4.9492 1.1755 14 7 3.5215 -5.3789 1.6858 15 6 3.1593 -6.6583 2.3010 16 1 2.1895 -6.5647 2.7898 17 6 4.2016 -7.0379 3.3212 18 1 5.0491 -6.3912 3.4937 19 6 4.0730 -8.2109 4.0343 20 7 3.0412 -8.9987 3.8238 21 14 5.3645 -8.6812 5.2993 22 1 4.9858 -8.1257 6.6234 23 1 5.4528 -10.1609 5.3901 24 1 6.6818 -8.1310 4.8901 25 6 3.0842 -7.7401 1.2217 26 9 4.3289 -7.8600 0.5943 27 9 2.7390 -8.9618 1.8093 28 9 2.1168 -7.3876 0.2747 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.0833 1.7150 1.0275 33 1 4.5560 2.4339 -0.5131 34 1 5.6091 0.9989 -0.5150 35 1 4.4891 -1.3483 -0.0127 36 1 2.4947 -2.9267 -2.0274 37 1 1.2436 -4.0475 -1.4377 38 1 0.8088 -2.3770 -1.8716 39 1 3.8267 -3.1357 0.5610 40 1 4.4492 -5.0964 1.6643 41 1 2.9506 -9.8238 4.3258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:54 Heat of formation + Delta-G solvation = -89.175526 kcal Electronic energy + Delta-G solvation = -29841.321883 eV Core-core repulsion = 25151.030035 eV Total energy + Delta-G solvation = -4690.291848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.28228 -45.93366 -45.55421 -41.50982 -39.30683 -35.85242 -34.44256 -33.87489 -32.58177 -30.84332 -30.07967 -28.83769 -27.83304 -25.68273 -24.52631 -23.10206 -21.82444 -20.73637 -19.76415 -19.68330 -18.34965 -17.11017 -16.78663 -16.57478 -16.45271 -15.88817 -15.76825 -15.38059 -14.80361 -14.47647 -14.26964 -14.04582 -13.78008 -13.51023 -13.30387 -13.15134 -12.86758 -12.75330 -12.55645 -12.45121 -12.33449 -12.26011 -12.22800 -12.12410 -11.92643 -11.83963 -11.76356 -11.18427 -11.11704 -10.83179 -10.75410 -10.64969 -10.37821 -9.63613 -9.47304 -9.36346 -8.83589 -8.69330 -8.43942 -8.11630 -6.21241 -4.44838 1.69971 2.31270 2.56752 3.18973 3.22022 3.26838 3.31154 3.85227 4.20548 4.25012 4.57337 4.62248 4.79789 4.84608 4.85700 4.96323 5.01000 5.09691 5.19101 5.43537 5.49711 5.57566 5.69409 5.76536 5.83756 5.88941 5.93898 5.96593 6.19217 6.28298 6.37813 6.53461 6.80624 6.89357 6.92396 7.26043 7.41457 7.56103 7.65166 7.73284 8.52089 8.71055 9.18539 9.30593 10.70371 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.003143 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.187484 B = 8907.956236 C = 9695.933404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.087 3.913 3 N -0.298 5.298 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.061 3.939 7 C -0.234 4.234 8 C 0.243 3.757 9 H 0.094 0.906 10 C -0.156 4.156 11 N -0.748 5.748 12 C 0.700 3.300 13 O -0.582 6.582 14 N -0.727 5.727 15 C 0.263 3.737 16 H 0.085 0.915 17 C -0.551 4.551 18 H 0.076 0.924 19 C 0.065 3.935 20 N -0.839 5.839 21 Si 0.914 3.086 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.416 3.584 26 F -0.211 7.211 27 F -0.138 7.138 28 F -0.216 7.216 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.387 0.613 40 H 0.393 0.607 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 16.489 -7.839 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 N -0.121 5.121 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.085 4.085 7 C -0.246 4.246 8 C 0.136 3.864 9 H 0.112 0.888 10 C -0.214 4.214 11 N -0.404 5.404 12 C 0.400 3.600 13 O -0.459 6.459 14 N -0.380 5.380 15 C 0.156 3.844 16 H 0.103 0.897 17 C -0.589 4.589 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.741 3.259 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.359 3.641 26 F -0.193 7.193 27 F -0.119 7.119 28 F -0.198 7.198 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.188 0.812 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.220 0.780 40 H 0.226 0.774 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.730 17.289 -7.752 19.026 hybrid contribution 1.826 -1.117 0.345 2.168 sum 3.556 16.172 -7.407 18.139 Atomic orbital electron populations 1.20244 0.86505 1.03666 1.03127 1.22170 0.96949 0.89778 0.99024 1.77300 0.86343 1.22614 1.25836 1.48301 1.05538 1.04628 1.57441 1.21842 0.83624 0.94941 1.03399 1.22154 0.99143 0.84879 1.02365 1.20096 0.92146 0.95922 1.16406 1.18798 0.91019 0.82417 0.94171 0.88806 1.22167 1.01364 1.02288 0.95620 1.45188 1.10011 1.20770 1.64429 1.16043 0.85636 0.80076 0.78220 1.90911 1.17526 1.73682 1.63824 1.45261 1.09056 1.21458 1.62210 1.19581 1.01578 0.75795 0.87405 0.89708 1.20874 1.08899 1.08013 1.21076 0.90579 1.25072 0.96545 0.95523 0.97247 1.70405 1.27843 1.12069 1.36914 0.86229 0.81006 0.77807 0.80850 1.20231 1.20816 1.19598 1.23177 0.71672 0.86803 0.82412 1.92979 1.44921 1.96773 1.84626 1.93398 1.91699 1.45424 1.81397 1.93072 1.65260 1.92353 1.69102 0.90340 0.89915 0.90904 0.90744 0.89412 0.89467 0.81170 0.92976 0.91419 0.92052 0.77970 0.77413 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.26 36.00 0.37 -0.36 16 2 C 0.09 1.06 7.22 -82.40 -0.59 0.47 16 3 N -0.30 -3.80 12.58 33.67 0.42 -3.37 16 4 N -0.38 -3.94 4.01 -68.16 -0.27 -4.21 16 5 C 0.10 0.61 11.47 59.85 0.69 1.30 16 6 C 0.06 0.62 10.66 -17.22 -0.18 0.44 16 7 C -0.23 -2.81 5.22 -105.06 -0.55 -3.35 16 8 C 0.24 3.27 2.81 -69.08 -0.19 3.08 16 9 H 0.09 1.43 6.85 -51.93 -0.36 1.08 16 10 C -0.16 -1.99 9.47 37.16 0.35 -1.64 16 11 N -0.75 -10.91 5.05 -59.81 -0.30 -11.21 16 12 C 0.70 13.83 8.06 -86.92 -0.70 13.13 16 13 O -0.58 -13.80 14.58 5.29 0.08 -13.72 16 14 N -0.73 -14.74 4.99 -59.81 -0.30 -15.04 16 15 C 0.26 6.52 2.21 -69.08 -0.15 6.37 16 16 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 17 C -0.55 -13.99 8.46 -34.44 -0.29 -14.28 16 18 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 19 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 20 N -0.84 -22.99 9.50 55.43 0.53 -22.47 16 21 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 C 0.42 10.70 2.81 37.16 0.10 10.80 16 26 F -0.21 -5.21 16.94 2.25 0.04 -5.17 16 27 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 28 F -0.22 -5.54 15.68 2.25 0.04 -5.50 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.76 7.37 -51.93 -0.38 0.38 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.17 1.24 7.06 -52.49 -0.37 0.87 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.39 4.45 7.02 -40.82 -0.29 4.16 16 40 H 0.39 6.77 8.55 -40.82 -0.35 6.42 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -33.37 356.55 -5.70 -39.07 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.06 Total: 7.53 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: -1.25 Total: 17.56 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.08 Total: -56.30 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 0.10 Total: -14.48 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.37 -5.70 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.105 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds