Wall clock time and date at job start Tue Mar 31 2020 18:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.89620 * 2 1 4 4 N 1.40086 * 108.20537 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03748 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92189 * 0.25805 * 4 3 2 7 7 C 1.35315 * 107.74973 * 359.58119 * 6 4 3 8 8 C 1.50696 * 126.03898 * 180.16094 * 7 6 4 9 9 H 1.09006 * 109.46926 * 145.31215 * 8 7 6 10 10 C 1.53003 * 109.46743 * 265.30453 * 8 7 6 11 11 N 1.46499 * 109.47569 * 25.30539 * 8 7 6 12 12 C 1.34773 * 119.99858 * 155.00035 * 11 8 7 13 13 O 1.21588 * 120.00352 * 0.02562 * 12 11 8 14 14 N 1.34779 * 119.99654 * 180.02562 * 12 11 8 15 15 C 1.46505 * 119.99706 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.46828 * 324.99601 * 15 14 12 17 17 C 1.50701 * 109.46679 * 204.99809 * 15 14 12 18 18 H 1.08001 * 120.00429 * 359.97438 * 17 15 14 19 19 C 1.37877 * 119.99599 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00237 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99804 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47214 * 90.00058 * 21 19 17 23 23 H 1.48507 * 109.46962 * 210.00258 * 21 19 17 24 24 H 1.48506 * 109.47252 * 329.99763 * 21 19 17 25 25 C 1.52996 * 109.47368 * 84.99734 * 15 14 12 26 26 F 1.39901 * 109.47143 * 59.99749 * 25 15 14 27 27 F 1.39896 * 109.47122 * 179.97438 * 25 15 14 28 28 F 1.39898 * 109.47096 * 299.99863 * 25 15 14 29 29 H 1.08999 * 109.47079 * 89.97963 * 1 2 3 30 30 H 1.09000 * 109.46806 * 209.97407 * 1 2 3 31 31 H 1.08995 * 109.47246 * 329.97742 * 1 2 3 32 32 H 1.09002 * 109.47391 * 90.01945 * 5 4 3 33 33 H 1.09001 * 109.46813 * 330.02001 * 5 4 3 34 34 H 1.09004 * 109.47041 * 210.02128 * 5 4 3 35 35 H 1.07999 * 126.12286 * 179.73805 * 6 4 3 36 36 H 1.09000 * 109.47429 * 60.00564 * 10 8 7 37 37 H 1.09008 * 109.46686 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.47616 * 299.99851 * 10 8 7 39 39 H 0.96999 * 119.99717 * 335.00084 * 11 8 7 40 40 H 0.96999 * 119.99920 * 359.97438 * 14 12 11 41 41 H 0.97005 * 120.00021 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5010 -0.0003 6 6 3.6142 -0.7152 -0.0067 7 6 2.3272 -1.1330 -0.0005 8 6 1.8601 -2.5657 -0.0006 9 1 0.9472 -2.6503 0.5891 10 6 1.5819 -3.0112 -1.4377 11 7 2.8990 -3.4182 0.5825 12 6 2.5657 -4.5949 1.1489 13 8 1.4029 -4.9492 1.1755 14 7 3.5215 -5.3789 1.6858 15 6 3.1593 -6.6583 2.3010 16 1 2.1895 -6.5647 2.7898 17 6 4.2016 -7.0379 3.3212 18 1 5.0491 -6.3912 3.4937 19 6 4.0730 -8.2109 4.0343 20 7 3.0412 -8.9987 3.8238 21 14 5.3645 -8.6812 5.2993 22 1 4.9858 -8.1257 6.6234 23 1 5.4528 -10.1609 5.3901 24 1 6.6818 -8.1310 4.8901 25 6 3.0842 -7.7401 1.2217 26 9 4.3289 -7.8600 0.5943 27 9 2.7390 -8.9618 1.8093 28 9 2.1168 -7.3876 0.2747 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.0833 1.7150 1.0275 33 1 4.5560 2.4339 -0.5131 34 1 5.6091 0.9989 -0.5150 35 1 4.4891 -1.3483 -0.0127 36 1 2.4947 -2.9267 -2.0274 37 1 1.2436 -4.0475 -1.4377 38 1 0.8088 -2.3770 -1.8716 39 1 3.8267 -3.1357 0.5610 40 1 4.4492 -5.0964 1.6643 41 1 2.9506 -9.8238 4.3258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:54 Heat of formation + Delta-G solvation = -112.407343 kcal Electronic energy + Delta-G solvation = -29842.329290 eV Core-core repulsion = 25151.030035 eV Total energy + Delta-G solvation = -4691.299255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.35140 -47.98227 -47.66920 -42.35896 -40.84222 -37.18437 -36.12990 -34.78043 -34.40343 -32.14046 -30.79846 -29.90916 -29.41560 -26.54976 -26.40136 -24.30659 -23.30445 -22.19039 -21.02546 -20.71787 -19.80754 -18.82954 -18.75412 -18.52392 -17.98216 -17.22129 -16.96159 -16.55899 -16.48695 -15.80328 -15.53578 -15.31673 -15.02615 -14.89595 -14.60922 -14.44908 -14.39319 -14.26715 -14.22719 -13.99505 -13.96032 -13.83854 -13.76808 -13.29617 -13.04138 -12.97806 -12.88125 -12.82691 -12.70298 -12.57834 -12.18169 -12.11654 -11.60473 -11.53647 -11.14613 -10.64764 -10.28349 -10.17724 -9.78266 -9.29742 -8.17495 -6.48012 0.89906 1.48483 1.49965 1.59663 1.63483 1.65520 1.85311 2.22604 2.40009 2.62670 2.98649 3.35462 3.54922 3.85219 3.86170 3.93871 4.04957 4.22326 4.26088 4.41361 4.45422 4.47859 4.50965 4.71753 4.78776 4.79664 4.86720 4.92429 5.03573 5.12671 5.15137 5.32441 5.49047 5.57596 5.64094 5.69795 5.72877 6.11274 6.19782 6.57252 6.72889 7.20848 7.26860 7.73280 8.75253 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.003143 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.187484 B = 8907.956236 C = 9695.933404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.076 3.924 3 N -0.328 5.328 4 N -0.377 5.377 5 C 0.093 3.907 6 C 0.071 3.929 7 C -0.255 4.255 8 C 0.248 3.752 9 H 0.071 0.929 10 C -0.148 4.148 11 N -0.725 5.725 12 C 0.698 3.302 13 O -0.626 6.626 14 N -0.720 5.720 15 C 0.271 3.729 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.093 0.907 19 C 0.015 3.985 20 N -0.875 5.875 21 Si 0.983 3.017 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.257 1.257 25 C 0.413 3.587 26 F -0.203 7.203 27 F -0.152 7.152 28 F -0.218 7.218 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.203 0.797 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.406 0.594 40 H 0.410 0.590 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 17.971 -7.990 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.152 5.152 4 N -0.158 5.158 5 C -0.047 4.047 6 C -0.077 4.077 7 C -0.267 4.267 8 C 0.142 3.858 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.381 5.381 12 C 0.398 3.602 13 O -0.506 6.506 14 N -0.374 5.374 15 C 0.163 3.837 16 H 0.063 0.937 17 C -0.597 4.597 18 H 0.111 0.889 19 C -0.191 4.191 20 N -0.509 5.509 21 Si 0.806 3.194 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.181 1.181 25 C 0.356 3.644 26 F -0.185 7.185 27 F -0.133 7.133 28 F -0.200 7.200 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.220 0.780 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.243 0.757 40 H 0.246 0.754 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.321 18.859 -7.933 20.911 hybrid contribution 1.045 -1.489 0.339 1.851 sum 5.366 17.370 -7.594 19.702 Atomic orbital electron populations 1.20305 0.85533 1.03724 1.04029 1.22499 0.97930 0.89751 0.98787 1.77257 0.87661 1.23238 1.27068 1.48678 1.05759 1.05212 1.56126 1.22218 0.82837 0.95005 1.04596 1.22608 0.99462 0.85282 1.00341 1.19930 0.93189 0.94649 1.18936 1.18728 0.89839 0.83318 0.93939 0.91139 1.22089 1.02488 1.00622 0.95479 1.44977 1.11471 1.18913 1.62779 1.16201 0.84785 0.81070 0.78186 1.90886 1.19407 1.74924 1.65386 1.44970 1.10104 1.20230 1.62125 1.19151 0.99865 0.77367 0.87320 0.93668 1.21224 1.09202 1.08287 1.20943 0.88919 1.25992 0.98440 0.95519 0.99119 1.70542 1.29726 1.12499 1.38132 0.85171 0.78819 0.77132 0.78254 1.19686 1.21146 1.18126 1.23344 0.71796 0.86616 0.82622 1.92979 1.44332 1.96742 1.84484 1.93370 1.91870 1.46385 1.81715 1.93064 1.65455 1.92312 1.69178 0.88995 0.90261 0.90400 0.89758 0.89026 0.86537 0.78019 0.91628 0.94455 0.90332 0.75744 0.75429 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.26 71.24 0.73 -0.71 16 2 C 0.08 1.78 7.22 43.10 0.31 2.09 16 3 N -0.33 -7.92 12.58 -47.38 -0.60 -8.51 16 4 N -0.38 -6.90 4.01 -369.56 -1.48 -8.39 16 5 C 0.09 0.82 11.47 127.77 1.47 2.29 16 6 C 0.07 1.25 10.66 83.54 0.89 2.14 16 7 C -0.25 -5.73 5.22 -20.15 -0.11 -5.83 16 8 C 0.25 6.53 2.81 44.25 0.12 6.65 16 9 H 0.07 2.21 6.85 -2.38 -0.02 2.19 16 10 C -0.15 -3.68 9.47 71.98 0.68 -3.00 16 11 N -0.72 -20.22 5.05 -461.41 -2.33 -22.55 16 12 C 0.70 27.47 8.06 179.05 1.44 28.91 16 13 O -0.63 -30.50 14.58 -3.99 -0.06 -30.55 16 14 N -0.72 -28.73 4.99 -461.40 -2.30 -31.04 16 15 C 0.27 13.58 2.21 44.24 0.10 13.68 16 16 H 0.05 2.64 7.58 -2.39 -0.02 2.62 16 17 C -0.56 -27.97 8.46 25.60 0.22 -27.75 16 18 H 0.09 4.22 7.74 -2.91 -0.02 4.20 16 19 C 0.01 0.74 5.20 84.66 0.44 1.19 16 20 N -0.87 -48.53 9.50 21.45 0.20 -48.32 16 21 Si 0.98 40.15 29.54 68.60 2.03 42.18 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 C 0.41 21.45 2.81 71.98 0.20 21.65 16 26 F -0.20 -9.90 16.94 44.97 0.76 -9.14 16 27 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 28 F -0.22 -11.39 15.68 44.97 0.70 -10.68 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.50 7.37 -2.39 -0.02 1.48 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.20 2.06 7.06 -2.91 -0.02 2.04 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 8.21 7.02 -92.71 -0.65 7.56 16 40 H 0.41 13.32 8.55 -92.71 -0.79 12.53 16 41 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -73.20 356.55 3.67 -69.54 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.34 Total: 24.20 kcal Atomic # 6 Polarization: 34.81 SS G_CDS: 6.50 Total: 41.31 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -6.51 Total: -118.81 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.06 Total: -30.55 kcal Atomic # 9 Polarization: -29.92 SS G_CDS: 2.05 Total: -27.87 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -73.20 3.67 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.872 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds