Wall clock time and date at job start Tue Mar 31 2020 18:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30845 * 125.89349 * 2 1 4 4 N 1.40086 * 108.20095 * 180.26153 * 3 2 1 5 5 C 1.46497 * 126.03627 * 179.69830 * 4 3 2 6 6 C 1.34950 * 107.92584 * 359.72275 * 4 3 2 7 7 C 1.50696 * 126.12674 * 179.97438 * 6 4 3 8 8 C 1.35316 * 107.74726 * 359.97438 * 6 4 3 9 9 C 1.50700 * 126.04276 * 179.97438 * 8 6 4 10 10 N 1.46504 * 109.46763 * 90.00266 * 9 8 6 11 11 C 1.34779 * 119.99722 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99852 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99707 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99943 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 25 25 F 1.39897 * 109.46935 * 299.99908 * 24 14 13 26 26 F 1.39899 * 109.47307 * 59.99998 * 24 14 13 27 27 F 1.39901 * 109.47163 * 180.02562 * 24 14 13 28 28 H 1.09004 * 109.46348 * 270.20233 * 1 2 3 29 29 H 1.08994 * 109.47257 * 30.20480 * 1 2 3 30 30 H 1.09003 * 109.46807 * 150.21204 * 1 2 3 31 31 H 1.09000 * 109.47457 * 270.02983 * 5 4 3 32 32 H 1.09004 * 109.47053 * 30.02702 * 5 4 3 33 33 H 1.09001 * 109.46992 * 150.02748 * 5 4 3 34 34 H 1.09008 * 109.47105 * 270.02652 * 7 6 4 35 35 H 1.09000 * 109.46992 * 30.01713 * 7 6 4 36 36 H 1.08999 * 109.47586 * 150.02597 * 7 6 4 37 37 H 1.08998 * 109.46621 * 330.00719 * 9 8 6 38 38 H 1.08989 * 109.47311 * 210.00530 * 9 8 6 39 39 H 0.96997 * 119.99834 * 0.02562 * 10 9 8 40 40 H 0.96997 * 119.99849 * 359.97438 * 13 11 10 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6343 -0.0061 5 6 4.7898 1.5010 -0.0144 6 6 3.6143 -0.7152 -0.0035 7 6 4.8351 -1.5987 -0.0086 8 6 2.3272 -1.1329 0.0045 9 6 1.8600 -2.5657 0.0094 10 7 1.7165 -3.0278 1.3922 11 6 1.3076 -4.2874 1.6428 12 8 1.0583 -5.0402 0.7212 13 7 1.1751 -4.7123 2.9149 14 6 0.7301 -6.0812 3.1874 15 1 1.1280 -6.7511 2.4250 16 6 1.2281 -6.5108 4.5432 17 1 1.8175 -5.8323 5.1420 18 6 0.9321 -7.7707 5.0189 19 7 0.2148 -8.5972 4.2896 20 14 1.5500 -8.3035 6.6993 21 1 1.0988 -9.6911 6.9755 22 1 3.0338 -8.2516 6.7204 23 1 1.0079 -7.3913 7.7381 24 6 -0.7988 -6.1344 3.1651 25 9 -1.3095 -5.2746 4.1434 26 9 -1.2611 -5.7355 1.9064 27 9 -1.2238 -7.4415 3.4258 28 1 -0.3632 0.0036 1.0277 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3633 -0.8919 -0.5106 31 1 5.0771 1.7140 -1.0440 32 1 4.5591 2.4345 0.4990 33 1 5.6121 0.9994 0.4959 34 1 5.1240 -1.8133 -1.0376 35 1 5.6540 -1.0899 0.4999 36 1 4.6105 -2.5319 0.5078 37 1 2.5906 -3.1878 -0.5076 38 1 0.8985 -2.6360 -0.4988 39 1 1.9158 -2.4272 2.1274 40 1 1.3744 -4.1117 3.6501 41 1 0.0069 -9.4837 4.6241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932917802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:33 Heat of formation + Delta-G solvation = -94.105493 kcal Electronic energy + Delta-G solvation = -29700.037679 eV Core-core repulsion = 25009.532052 eV Total energy + Delta-G solvation = -4690.505627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.25424 -45.90506 -45.52801 -41.58452 -39.15388 -35.27928 -34.44071 -33.97914 -32.57743 -31.93822 -29.75022 -28.81596 -27.51952 -26.01414 -24.53737 -24.17654 -21.54184 -20.10349 -19.85696 -19.65317 -18.26425 -16.92005 -16.74903 -16.54877 -16.45874 -16.03571 -15.85678 -15.05131 -14.75303 -14.67585 -14.13378 -13.93733 -13.70061 -13.52814 -13.39118 -13.21447 -12.99461 -12.81804 -12.79383 -12.49552 -12.31549 -12.28943 -12.19476 -12.12641 -12.06426 -11.89178 -11.84659 -11.73631 -11.12565 -10.83986 -10.73360 -10.59572 -10.35932 -9.62599 -9.52669 -9.21941 -8.69812 -8.63607 -8.52161 -8.06566 -6.19274 -4.42888 1.62610 2.26655 2.44133 3.21818 3.26667 3.28107 3.53628 3.89405 4.22695 4.23553 4.39518 4.66059 4.75290 4.78118 4.87294 4.97240 4.98645 5.06474 5.15007 5.20830 5.25261 5.43833 5.56070 5.62097 5.83298 5.89424 5.94987 5.96621 5.99388 6.14987 6.30443 6.54425 6.81196 6.92071 6.93453 7.30120 7.44921 7.57069 7.67420 7.78764 8.54159 8.76422 9.20884 9.34667 10.72261 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.003046 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.290079 B = 9188.838738 C = 9963.183746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.302 5.302 4 N -0.376 5.376 5 C 0.102 3.898 6 C 0.107 3.893 7 C -0.097 4.097 8 C -0.255 4.255 9 C 0.223 3.777 10 N -0.749 5.749 11 C 0.698 3.302 12 O -0.586 6.586 13 N -0.728 5.728 14 C 0.263 3.737 15 H 0.085 0.915 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.415 3.585 25 F -0.211 7.211 26 F -0.216 7.216 27 F -0.138 7.138 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.391 0.609 40 H 0.393 0.607 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 16.359 -6.476 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.124 5.124 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.022 4.022 7 C -0.155 4.155 8 C -0.267 4.267 9 C 0.098 3.902 10 N -0.406 5.406 11 C 0.398 3.602 12 O -0.463 6.463 13 N -0.380 5.380 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.741 3.259 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.199 1.199 24 C 0.359 3.641 25 F -0.193 7.193 26 F -0.198 7.198 27 F -0.120 7.120 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.224 0.776 40 H 0.226 0.774 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.040 16.795 -7.369 20.026 hybrid contribution 0.205 -0.415 1.564 1.631 sum 8.245 16.381 -5.804 19.235 Atomic orbital electron populations 1.20234 0.86448 1.03407 1.03365 1.22270 0.96954 0.90068 0.97863 1.77353 0.86036 1.22418 1.26597 1.48329 1.05666 1.04130 1.57668 1.21820 0.83948 0.94907 1.03264 1.20955 0.97026 0.84480 0.99734 1.20540 0.92612 0.98712 1.03633 1.19755 0.91273 0.96087 1.19577 1.19124 1.00825 0.87595 0.82647 1.45254 1.74464 1.12664 1.08199 1.16092 0.78298 0.81776 0.84060 1.90912 1.57084 1.54803 1.43544 1.45265 1.71673 1.15887 1.05206 1.19561 0.84440 0.79576 1.00723 0.89758 1.20847 1.36912 1.00317 1.00826 0.90623 1.25074 0.94222 0.96330 0.98757 1.70401 1.32707 1.07165 1.37007 0.86288 0.79153 0.77825 0.82635 1.20908 1.19849 1.19885 1.23182 0.95310 0.74346 0.71258 1.92980 1.89769 1.71954 1.64570 1.93072 1.91515 1.91316 1.43890 1.93397 1.91542 1.33961 1.93052 0.90243 0.91007 0.89989 0.90829 0.89322 0.89529 0.89899 0.91103 0.88930 0.91498 0.91181 0.77588 0.77366 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.26 36.01 0.37 -0.42 16 2 C 0.10 1.18 7.22 -82.40 -0.59 0.59 16 3 N -0.30 -3.91 12.58 33.67 0.42 -3.49 16 4 N -0.38 -3.98 4.01 -63.89 -0.26 -4.24 16 5 C 0.10 0.62 11.27 59.85 0.67 1.29 16 6 C 0.11 1.13 6.93 -82.26 -0.57 0.56 16 7 C -0.10 -0.74 9.72 36.00 0.35 -0.39 16 8 C -0.26 -3.10 5.47 -105.05 -0.57 -3.67 16 9 C 0.22 3.04 5.58 -5.19 -0.03 3.01 16 10 N -0.75 -11.22 5.55 -66.42 -0.37 -11.59 16 11 C 0.70 13.96 8.10 -86.91 -0.70 13.25 16 12 O -0.59 -14.08 14.92 5.29 0.08 -14.00 16 13 N -0.73 -14.98 4.99 -59.81 -0.30 -15.28 16 14 C 0.26 6.59 2.21 -69.09 -0.15 6.44 16 15 H 0.08 2.37 7.58 -51.92 -0.39 1.98 16 16 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 16 17 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 18 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.11 9.50 55.43 0.53 -22.58 16 20 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 C 0.42 10.81 2.81 37.16 0.10 10.91 16 25 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 26 F -0.22 -5.61 15.68 2.25 0.04 -5.57 16 27 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.83 7.25 -51.93 -0.38 0.46 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.34 7.05 -51.93 -0.37 -0.03 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.40 7.08 -51.93 -0.37 0.03 16 36 H 0.09 0.80 7.77 -51.93 -0.40 0.40 16 37 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 38 H 0.07 1.01 7.24 -51.94 -0.38 0.64 16 39 H 0.39 5.06 8.48 -40.82 -0.35 4.71 16 40 H 0.39 7.00 8.55 -40.82 -0.35 6.65 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -33.29 356.70 -5.98 -39.27 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.04 Total: 7.34 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: -1.51 Total: 18.79 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.03 Total: -57.18 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.29 -5.98 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.834 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds