Wall clock time and date at job start Tue Mar 31 2020 17:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00520 * 2 1 4 4 H 1.48498 * 109.47439 * 235.35875 * 3 2 1 5 5 H 1.48504 * 109.46894 * 355.35290 * 3 2 1 6 6 H 1.48500 * 109.47237 * 115.35344 * 3 2 1 7 7 C 1.38816 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00370 * 352.34496 * 7 2 1 9 9 N 1.36937 * 119.99839 * 172.34154 * 7 2 1 10 10 C 1.47223 * 135.96710 * 6.42598 * 9 7 2 11 11 C 1.52951 * 87.67034 * 153.64117 * 10 9 7 12 12 C 1.47219 * 135.96771 * 186.79562 * 9 7 2 13 13 C 1.53317 * 115.75888 * 270.15715 * 11 10 9 14 14 C 1.55027 * 103.78662 * 229.61165 * 13 11 10 15 15 H 1.08996 * 110.87186 * 139.22857 * 14 13 11 16 16 N 1.46500 * 110.87490 * 262.70411 * 14 13 11 17 17 C 1.34774 * 120.00309 * 204.99824 * 16 14 13 18 18 O 1.21569 * 119.99820 * 359.97438 * 17 16 14 19 19 C 1.47717 * 119.99806 * 179.97438 * 17 16 14 20 20 C 1.40952 * 125.97048 * 179.97438 * 19 17 16 21 21 C 1.36168 * 107.95028 * 179.76985 * 20 19 17 22 22 N 1.35807 * 107.31298 * 0.53885 * 21 20 19 23 23 N 1.31833 * 125.97765 * 359.69124 * 19 17 16 24 24 C 1.47425 * 108.07139 * 179.18048 * 22 21 20 25 25 C 1.54648 * 102.34708 * 344.68622 * 24 22 21 26 26 O 1.36121 * 140.88050 * 180.70034 * 21 20 19 27 27 C 1.55057 * 102.12752 * 20.86532 * 14 13 11 28 28 O 1.42839 * 115.80213 * 141.75311 * 11 10 9 29 29 H 0.97000 * 119.99828 * 184.89759 * 1 2 3 30 30 H 1.08999 * 113.50310 * 268.31943 * 10 9 7 31 31 H 1.08997 * 113.49857 * 38.85711 * 10 9 7 32 32 H 1.09002 * 113.50058 * 321.13917 * 12 9 7 33 33 H 1.09007 * 113.50213 * 91.62273 * 12 9 7 34 34 H 1.09000 * 110.56596 * 348.19267 * 13 11 10 35 35 H 1.09010 * 110.56173 * 111.03913 * 13 11 10 36 36 H 0.97002 * 119.99494 * 25.00112 * 16 14 13 37 37 H 1.07999 * 126.02321 * 359.80775 * 20 19 17 38 38 H 1.09002 * 110.82972 * 226.47555 * 24 22 21 39 39 H 1.09000 * 110.83465 * 102.90263 * 24 22 21 40 40 H 1.09003 * 110.85197 * 266.66197 * 25 24 22 41 41 H 1.09003 * 111.02803 * 143.11336 * 25 24 22 42 42 H 1.08996 * 110.58890 * 82.02695 * 27 14 13 43 43 H 1.09008 * 110.58560 * 204.93712 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1871 1.6484 -1.1518 5 1 1.2894 2.7441 -0.1134 6 1 3.0171 1.7465 1.2652 7 6 2.0102 -1.2022 0.0005 8 1 1.4775 -2.1333 0.1255 9 7 3.3704 -1.2077 -0.1575 10 6 4.4312 -0.1896 -0.2344 11 6 5.4009 -1.2504 0.2888 12 6 4.4117 -2.2338 -0.3315 13 6 5.5437 -1.3287 1.8133 14 6 7.0769 -1.3126 2.0420 15 1 7.3356 -0.6871 2.8963 16 7 7.5927 -2.6724 2.2187 17 6 8.7346 -2.8762 2.9049 18 8 9.3370 -1.9315 3.3768 19 6 9.2542 -4.2474 3.0835 20 6 10.4301 -4.6037 3.7742 21 6 10.5562 -5.9583 3.7171 22 7 9.5020 -6.4327 3.0044 23 7 8.6965 -5.3522 2.6293 24 6 9.6327 -7.8984 2.9152 25 6 11.1040 -8.1253 3.3339 26 8 11.3759 -6.9612 4.1357 27 6 7.5971 -0.6920 0.7197 28 8 6.7090 -1.2338 -0.2847 29 1 -0.4850 -0.8370 0.0717 30 1 4.6494 0.1348 -1.2518 31 1 4.2842 0.6439 0.4525 32 1 4.2484 -3.1257 0.2734 33 1 4.6239 -2.4651 -1.3754 34 1 5.0769 -0.4649 2.2865 35 1 5.1099 -2.2546 2.1914 36 1 7.1122 -3.4261 1.8418 37 1 11.1108 -3.9224 4.2631 38 1 9.4628 -8.2413 1.8946 39 1 8.9518 -8.3913 3.6092 40 1 11.7556 -8.1558 2.4606 41 1 11.2067 -9.0358 3.9243 42 1 7.5225 0.3949 0.7510 43 1 8.6249 -1.0013 0.5294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053830919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:13 Heat of formation + Delta-G solvation = 70.064663 kcal Electronic energy + Delta-G solvation = -28504.468921 eV Core-core repulsion = 24362.938986 eV Total energy + Delta-G solvation = -4141.529935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73024 -40.60509 -39.63337 -38.53816 -36.68286 -34.50434 -33.76250 -32.34667 -31.13284 -29.93057 -29.27758 -28.41749 -25.78819 -25.54231 -25.05450 -23.34230 -21.89767 -21.54456 -21.24662 -20.32133 -19.13479 -18.31372 -17.55371 -17.48825 -16.89694 -16.71392 -16.11782 -15.77579 -15.60507 -15.36028 -15.11699 -14.87719 -14.54981 -14.46248 -13.99269 -13.83768 -13.45070 -13.28901 -13.14420 -12.92185 -12.84720 -12.33080 -11.85416 -11.71573 -11.50929 -11.43606 -11.34645 -11.30610 -10.94533 -10.62639 -10.35827 -10.33000 -9.94754 -9.66786 -9.24724 -9.20663 -8.94800 -8.88175 -8.73447 -7.17847 -6.34509 -3.25572 0.93313 1.37234 1.69834 2.27942 2.96776 3.10804 3.38592 3.39954 3.44902 3.64666 3.96866 4.01182 4.06030 4.31204 4.48661 4.53008 4.58155 4.65696 4.80296 4.83576 4.84562 4.90104 4.92971 5.07673 5.15828 5.37574 5.46542 5.48115 5.65942 5.75879 5.93182 5.95948 6.08101 6.15720 6.26644 6.31547 6.32376 6.33795 6.39232 6.54305 6.97109 7.04706 7.29961 7.37664 7.94215 8.21126 8.94998 9.47175 10.32642 11.18379 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.002470 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.179563 B =11333.449297 C =12002.910958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.024 4.024 3 Si 1.069 2.931 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.303 4.303 8 H 0.084 0.916 9 N -0.620 5.620 10 C 0.090 3.910 11 C 0.055 3.945 12 C 0.134 3.866 13 C -0.120 4.120 14 C 0.107 3.893 15 H 0.112 0.888 16 N -0.697 5.697 17 C 0.605 3.395 18 O -0.523 6.523 19 C 0.056 3.944 20 C -0.212 4.212 21 C 0.233 3.767 22 N -0.411 5.411 23 N -0.214 5.214 24 C 0.097 3.903 25 C 0.042 3.958 26 O -0.279 6.279 27 C 0.038 3.962 28 O -0.358 6.358 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.167 0.833 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.634 -15.978 7.368 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.902 3.098 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.429 4.429 8 H 0.102 0.898 9 N -0.351 5.351 10 C -0.036 4.036 11 C 0.015 3.985 12 C 0.007 3.993 13 C -0.158 4.158 14 C 0.002 3.998 15 H 0.130 0.870 16 N -0.348 5.348 17 C 0.388 3.612 18 O -0.397 6.397 19 C -0.111 4.111 20 C -0.242 4.242 21 C 0.065 3.935 22 N -0.209 5.209 23 N -0.044 5.044 24 C -0.024 4.024 25 C -0.035 4.035 26 O -0.185 6.185 27 C -0.040 4.040 28 O -0.275 6.275 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.184 0.816 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.763 -14.326 6.929 28.600 hybrid contribution 0.471 -2.045 0.302 2.120 sum 24.234 -16.371 7.231 30.126 Atomic orbital electron populations 1.70929 1.05297 1.29449 1.51771 1.25747 0.96434 1.00997 0.99087 0.83708 0.73855 0.75955 0.76296 1.21210 1.22184 1.22124 1.20079 0.78129 0.95864 1.48783 0.89817 1.45729 1.02034 1.01731 1.85574 1.23199 0.87415 0.93765 0.99206 1.23707 0.82486 1.00140 0.92215 1.22358 0.85851 0.92819 0.98248 1.22741 0.93030 1.05143 0.94905 1.22709 0.94068 0.83274 0.99712 0.86972 1.45825 1.24575 1.10019 1.54410 1.16752 0.80801 0.85207 0.78437 1.90823 1.58184 1.41305 1.49374 1.21917 0.95521 0.93231 1.00465 1.20049 1.02508 0.89204 1.12448 1.20765 0.86224 0.91156 0.95307 1.50678 1.19365 1.06595 1.44229 1.77708 1.14418 0.90468 1.21807 1.23289 0.98070 0.75079 1.05925 1.24475 0.93397 0.88921 0.96662 1.87153 1.57485 1.19206 1.54692 1.23971 0.95008 0.98273 0.86747 1.88790 1.17415 1.83678 1.37620 0.92891 0.92876 0.92930 0.93232 0.93552 0.88427 0.89175 0.75269 0.81587 0.86712 0.87496 0.88659 0.85051 0.90842 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.70 55.49 0.76 -28.62 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 3 Si 1.07 26.81 25.13 -169.99 -4.27 22.54 16 4 H -0.29 -6.76 6.11 56.52 0.35 -6.41 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.29 -6.84 6.63 56.52 0.37 -6.46 16 7 C -0.30 -8.67 11.08 -15.06 -0.17 -8.83 16 8 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 9 N -0.62 -15.23 3.66 -184.60 -0.68 -15.91 16 10 C 0.09 1.94 5.22 -7.89 -0.04 1.90 16 11 C 0.06 0.99 1.66 -90.66 -0.15 0.84 16 12 C 0.13 2.69 8.20 -8.04 -0.07 2.62 16 13 C -0.12 -1.83 6.11 -25.50 -0.16 -1.98 16 14 C 0.11 1.41 3.51 -65.77 -0.23 1.18 16 15 H 0.11 1.42 7.54 -51.93 -0.39 1.03 16 16 N -0.70 -8.81 5.14 -52.70 -0.27 -9.09 16 17 C 0.61 8.14 7.83 -12.39 -0.10 8.05 16 18 O -0.52 -8.14 16.54 5.31 0.09 -8.06 16 19 C 0.06 0.70 7.09 -82.97 -0.59 0.11 16 20 C -0.21 -2.43 10.60 -39.30 -0.42 -2.84 16 21 C 0.23 2.34 8.32 -16.54 -0.14 2.20 16 22 N -0.41 -3.97 5.01 -59.63 -0.30 -4.27 16 23 N -0.21 -2.59 12.39 33.32 0.41 -2.18 16 24 C 0.10 0.40 8.10 -2.67 -0.02 0.38 16 25 C 0.04 0.11 8.08 38.02 0.31 0.42 16 26 O -0.28 -2.15 11.19 -20.13 -0.23 -2.37 16 27 C 0.04 0.52 7.42 38.24 0.28 0.80 16 28 O -0.36 -5.95 11.32 -35.23 -0.40 -6.35 16 29 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 30 H 0.05 1.17 7.69 -51.93 -0.40 0.77 16 31 H 0.05 1.14 4.49 -51.93 -0.23 0.91 16 32 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.52 7.82 -51.93 -0.41 1.12 16 35 H 0.09 1.34 7.70 -51.92 -0.40 0.94 16 36 H 0.41 4.99 8.32 -40.82 -0.34 4.65 16 37 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.13 -0.06 8.14 -51.93 -0.42 -0.49 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -36.40 355.96 -6.71 -43.11 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.62 Total: 1.78 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.58 Total: 4.04 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.07 Total: -60.06 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.54 Total: -16.78 kcal Atomic # 14 Polarization: 26.81 SS G_CDS: -4.27 Total: 22.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.40 -6.71 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053830919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.176 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds