Wall clock time and date at job start Tue Mar 31 2020 17:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99982 * 3 2 1 5 5 H 1.48507 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47317 * 119.99678 * 3 2 1 7 7 C 1.38808 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99657 * 197.35415 * 7 2 1 9 9 N 1.36938 * 120.00087 * 17.36651 * 7 2 1 10 10 C 1.46930 * 120.62591 * 207.68116 * 9 7 2 11 11 C 1.53194 * 108.76829 * 233.60432 * 10 9 7 12 12 C 1.53045 * 109.31274 * 305.36318 * 11 10 9 13 13 H 1.08997 * 109.44616 * 181.38418 * 12 11 10 14 14 N 1.46497 * 109.46119 * 301.34893 * 12 11 10 15 15 C 1.34780 * 120.00074 * 275.07073 * 14 12 11 16 16 O 1.21519 * 119.99980 * 359.97438 * 15 14 12 17 17 C 1.48161 * 119.99988 * 180.02562 * 15 14 12 18 18 C 1.39252 * 119.65730 * 179.97438 * 17 15 14 19 19 C 1.39754 * 118.90392 * 179.97438 * 18 17 15 20 20 C 1.48148 * 120.88835 * 179.97438 * 19 18 17 21 21 N 1.34776 * 120.00019 * 179.97438 * 20 19 18 22 22 O 1.21512 * 119.99988 * 0.02562 * 20 19 18 23 23 C 1.39812 * 118.22143 * 0.02562 * 19 18 17 24 24 C 1.38491 * 119.18803 * 359.97438 * 23 19 18 25 25 N 1.31469 * 121.04063 * 359.73956 * 24 23 19 26 26 C 1.53042 * 109.53725 * 61.37021 * 12 11 10 27 27 H 1.08998 * 109.49683 * 58.61869 * 26 12 11 28 28 O 1.42900 * 109.49603 * 178.68383 * 26 12 11 29 29 C 1.46925 * 120.63205 * 27.67258 * 9 7 2 30 30 H 0.97006 * 120.00173 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58585 * 113.81809 * 10 9 7 32 32 H 1.08993 * 109.58727 * 353.38904 * 10 9 7 33 33 H 1.09004 * 109.49222 * 185.41927 * 11 10 9 34 34 H 1.08993 * 109.49950 * 65.31719 * 11 10 9 35 35 H 0.97001 * 120.00241 * 95.06436 * 14 12 11 36 36 H 1.07995 * 120.54956 * 359.95166 * 18 17 15 37 37 H 0.97004 * 119.99569 * 0.02562 * 21 20 19 38 38 H 0.96993 * 120.00013 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.39954 * 180.02562 * 23 19 18 40 40 H 1.08008 * 119.48062 * 180.02562 * 24 23 19 41 41 H 0.96702 * 113.99432 * 180.02562 * 28 26 12 42 42 H 1.09000 * 109.58701 * 6.61049 * 29 9 7 43 43 H 1.08995 * 109.59097 * 246.18563 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2795 9 7 1.3724 -2.3612 -0.3529 10 6 1.8195 -3.6546 0.1819 11 6 2.0749 -4.6100 -0.9881 12 6 0.8192 -4.6902 -1.8595 13 1 0.9901 -5.3883 -2.6789 14 7 -0.3086 -5.1559 -1.0487 15 6 -0.5067 -6.4764 -0.8651 16 8 0.2499 -7.2806 -1.3726 17 6 -1.6476 -6.9474 -0.0456 18 6 -1.8459 -8.3133 0.1389 19 6 -2.9268 -8.7402 0.9153 20 6 -3.1793 -10.1826 1.1398 21 7 -4.2267 -10.5743 1.8921 22 8 -2.4415 -11.0125 0.6465 23 6 -3.7640 -7.7695 1.4735 24 6 -3.4955 -6.4310 1.2404 25 7 -2.4665 -6.0633 0.5094 26 6 0.5012 -3.3051 -2.4275 27 1 1.3496 -2.9477 -3.0110 28 8 -0.6535 -3.3870 -3.2655 29 6 0.2280 -2.3350 -1.2739 30 1 -0.4851 0.8401 -0.0004 31 1 1.0471 -4.0687 0.8299 32 1 2.7401 -3.5170 0.7489 33 1 2.3141 -5.6012 -0.6028 34 1 2.9086 -4.2400 -1.5847 35 1 -0.9127 -4.5140 -0.6438 36 1 -1.1759 -9.0310 -0.3108 37 1 -4.8154 -9.9117 2.2863 38 1 -4.3917 -11.5186 2.0394 39 1 -4.6092 -8.0600 2.0797 40 1 -4.1389 -5.6772 1.6697 41 1 -0.9130 -2.5435 -3.6608 42 1 0.0985 -1.3267 -1.6673 43 1 -0.6742 -2.6414 -0.7446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090857402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:49 Heat of formation + Delta-G solvation = -87.032816 kcal Electronic energy + Delta-G solvation = -28928.239561 eV Core-core repulsion = 24779.897368 eV Total energy + Delta-G solvation = -4148.342193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03103 -41.02744 -40.01201 -39.13880 -36.86302 -35.75644 -35.19279 -33.91905 -33.34026 -32.58013 -31.22351 -30.46344 -27.32658 -26.38488 -25.36832 -24.01080 -23.50189 -23.04206 -21.61492 -20.28809 -19.77921 -18.83779 -18.39299 -18.20669 -18.08056 -17.00390 -16.89959 -16.81894 -16.54346 -16.25269 -16.01401 -15.93531 -15.63531 -15.47129 -15.13532 -15.03983 -14.92448 -14.59519 -14.27551 -13.86294 -13.54674 -13.27793 -13.10686 -12.86799 -12.70280 -12.61739 -12.20587 -11.99336 -11.83095 -11.67545 -11.46052 -11.24461 -11.19914 -10.94152 -10.79584 -10.65995 -10.56483 -10.43425 -10.04485 -8.70185 -7.87679 -5.33638 -0.65979 -0.30591 1.42281 1.50097 1.51917 1.58373 1.90954 1.94607 2.31520 2.51429 2.76387 3.01345 3.15928 3.28210 3.52381 3.65566 3.68699 3.74959 3.81695 3.91124 4.12068 4.20588 4.25941 4.35517 4.45488 4.56571 4.63168 4.69548 4.77641 4.88550 4.93430 5.05940 5.16515 5.30479 5.37008 5.47025 5.60162 5.66758 5.76342 6.27661 6.35585 6.36277 6.68496 6.83283 7.06931 7.13549 7.15308 7.80835 8.33613 9.17902 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.002817 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.640985 B = 9936.486231 C =10449.713948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.147 3.853 11 C -0.132 4.132 12 C 0.163 3.837 13 H 0.078 0.922 14 N -0.680 5.680 15 C 0.562 3.438 16 O -0.571 6.571 17 C 0.061 3.939 18 C -0.072 4.072 19 C -0.108 4.108 20 C 0.566 3.434 21 N -0.815 5.815 22 O -0.579 6.579 23 C -0.084 4.084 24 C 0.099 3.901 25 N -0.461 5.461 26 C 0.084 3.916 27 H 0.068 0.932 28 O -0.574 6.574 29 C 0.159 3.841 30 H 0.252 0.748 31 H 0.012 0.988 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.137 0.863 37 H 0.422 0.578 38 H 0.419 0.581 39 H 0.204 0.796 40 H 0.209 0.791 41 H 0.392 0.608 42 H 0.068 0.932 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -14.500 4.289 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.239 4.239 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.172 4.172 12 C 0.058 3.942 13 H 0.096 0.904 14 N -0.330 5.330 15 C 0.348 3.652 16 O -0.451 6.451 17 C -0.075 4.075 18 C -0.094 4.094 19 C -0.119 4.119 20 C 0.351 3.649 21 N -0.381 5.381 22 O -0.459 6.459 23 C -0.105 4.105 24 C -0.062 4.062 25 N -0.173 5.173 26 C 0.023 3.977 27 H 0.085 0.915 28 O -0.381 6.381 29 C 0.032 3.968 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.251 0.749 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.252 0.748 39 H 0.221 0.779 40 H 0.226 0.774 41 H 0.241 0.759 42 H 0.086 0.914 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -11.818 -15.038 3.568 19.456 hybrid contribution -0.161 0.966 0.304 1.025 sum -11.980 -14.073 3.872 18.882 Atomic orbital electron populations 1.70153 1.06361 1.26047 1.54724 1.25726 0.96050 1.01195 1.00931 0.85383 0.77613 0.79419 0.78219 1.20478 1.21983 1.20489 1.19450 0.93082 0.85758 1.41413 0.91486 1.44157 1.35830 1.02105 1.50469 1.20951 0.97526 0.85682 0.93681 1.22272 0.96676 0.99919 0.98346 1.20874 0.86124 0.94346 0.92879 0.90350 1.45829 1.29967 1.06560 1.50622 1.18210 0.83976 0.82789 0.80224 1.90735 1.47885 1.55029 1.51440 1.20817 0.96386 0.90511 0.99813 1.22093 0.96777 0.95418 0.95087 1.20355 0.96863 0.94611 1.00061 1.18101 0.81241 0.87193 0.78378 1.43442 1.28958 1.13707 1.52003 1.90853 1.48853 1.54659 1.51517 1.23087 0.98816 0.92455 0.96094 1.23638 0.92874 0.96476 0.93176 1.67485 1.03959 1.39135 1.06730 1.22608 0.88331 0.94843 0.91925 0.91454 1.86402 1.47665 1.38044 1.65971 1.21190 0.88555 0.97911 0.89107 0.93908 0.96974 0.92305 0.91062 0.90023 0.74942 0.84551 0.74489 0.74793 0.77936 0.77430 0.75871 0.91388 0.97289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.68 11.19 21.65 0.24 -51.43 16 2 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 3 Si 0.97 43.02 29.59 68.60 2.03 45.05 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.27 -14.09 9.58 84.03 0.81 -13.28 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.60 -28.91 2.99 -699.11 -2.09 -31.01 16 10 C 0.15 6.16 6.26 86.36 0.54 6.70 16 11 C -0.13 -4.83 5.77 30.67 0.18 -4.65 16 12 C 0.16 6.06 2.47 45.02 0.11 6.17 16 13 H 0.08 3.00 7.58 -2.39 -0.02 2.98 16 14 N -0.68 -25.21 4.14 -444.97 -1.84 -27.05 16 15 C 0.56 20.87 7.78 86.88 0.68 21.55 16 16 O -0.57 -23.79 15.98 -3.77 -0.06 -23.85 16 17 C 0.06 1.89 6.75 41.90 0.28 2.17 16 18 C -0.07 -2.00 9.20 22.88 0.21 -1.79 16 19 C -0.11 -2.04 5.91 -19.90 -0.12 -2.16 16 20 C 0.57 10.40 8.07 86.88 0.70 11.11 16 21 N -0.82 -5.11 8.83 -175.40 -1.55 -6.66 16 22 O -0.58 -16.80 17.28 -3.75 -0.06 -16.86 16 23 C -0.08 -0.88 9.62 22.71 0.22 -0.66 16 24 C 0.10 1.55 11.17 84.81 0.95 2.49 16 25 N -0.46 -12.33 9.51 -185.07 -1.76 -14.09 16 26 C 0.08 3.16 3.36 30.67 0.10 3.26 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 O -0.57 -19.77 13.21 -148.98 -1.97 -21.74 16 29 C 0.16 7.18 4.64 86.36 0.40 7.58 16 30 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 31 H 0.01 0.53 7.74 -2.39 -0.02 0.52 16 32 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.41 15.82 6.19 -92.71 -0.57 15.25 16 36 H 0.14 4.39 7.33 -2.91 -0.02 4.37 16 37 H 0.42 -0.77 6.97 -92.71 -0.65 -1.42 16 38 H 0.42 1.72 8.93 -92.71 -0.83 0.89 16 39 H 0.20 -0.40 6.53 -2.91 -0.02 -0.42 16 40 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.39 10.63 9.08 -74.06 -0.67 9.96 16 42 H 0.07 3.42 6.04 -2.39 -0.01 3.40 16 43 H 0.01 0.44 6.64 -2.39 -0.02 0.43 16 Total: -1.00 -79.06 359.15 -3.20 -82.26 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.60 Total: 28.76 kcal Atomic # 6 Polarization: 31.15 SS G_CDS: 5.47 Total: 36.62 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -7.00 Total: -130.24 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -2.09 Total: -62.46 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -79.06 -3.20 -82.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090857402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.772 kcal (2) G-P(sol) polarization free energy of solvation -79.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds