Wall clock time and date at job start Tue Mar 31 2020 18:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30538 * 125.95659 * 2 1 4 4 N 1.39949 * 108.85313 * 180.25642 * 3 2 1 5 5 C 1.46500 * 125.79399 * 179.74710 * 4 3 2 6 6 C 1.34597 * 108.40598 * 359.75286 * 4 3 2 7 7 C 1.37854 * 107.41053 * 359.97438 * 6 4 3 8 8 C 1.47554 * 126.38070 * 179.97438 * 7 6 4 9 9 N 1.29150 * 125.87439 * 180.02562 * 8 7 6 10 10 O 1.41387 * 112.86236 * 179.64329 * 9 8 7 11 11 C 1.44204 * 107.60039 * 17.49991 * 10 9 8 12 12 H 1.08995 * 110.96917 * 216.46995 * 11 10 9 13 13 C 1.50695 * 110.97298 * 92.69768 * 11 10 9 14 14 O 1.21276 * 120.00014 * 2.63236 * 13 11 10 15 15 N 1.34773 * 119.99944 * 182.63195 * 13 11 10 16 16 C 1.47067 * 136.05861 * 359.62837 * 15 13 11 17 17 C 1.53240 * 88.08390 * 207.20324 * 16 15 13 18 18 O 1.42908 * 114.01455 * 87.71549 * 17 16 15 19 19 C 1.50700 * 114.32818 * 220.46794 * 17 16 15 20 20 H 1.08003 * 119.99710 * 99.23585 * 19 17 16 21 21 C 1.37878 * 119.99990 * 279.23883 * 19 17 16 22 22 N 1.31510 * 120.00145 * 10.19220 * 21 19 17 23 23 Si 1.86803 * 119.99592 * 190.19399 * 21 19 17 24 24 H 1.48496 * 109.47032 * 84.99643 * 23 21 19 25 25 H 1.48503 * 109.46842 * 204.99591 * 23 21 19 26 26 H 1.48501 * 109.47086 * 324.99122 * 23 21 19 27 27 C 1.47073 * 136.05651 * 180.02562 * 15 13 11 28 28 C 1.51693 * 125.86816 * 0.02562 * 8 7 6 29 29 H 1.09001 * 109.47385 * 270.14894 * 1 2 3 30 30 H 1.08998 * 109.47096 * 30.15090 * 1 2 3 31 31 H 1.08998 * 109.47001 * 150.15038 * 1 2 3 32 32 H 1.09004 * 109.47304 * 270.00481 * 5 4 3 33 33 H 1.08999 * 109.47333 * 30.00112 * 5 4 3 34 34 H 1.09004 * 109.46657 * 150.00066 * 5 4 3 35 35 H 1.08000 * 126.29328 * 180.02562 * 6 4 3 36 36 H 1.08998 * 113.46505 * 321.93686 * 16 15 13 37 37 H 1.09000 * 113.46598 * 92.37738 * 16 15 13 38 38 H 0.96700 * 113.99800 * 90.40325 * 18 17 16 39 39 H 0.96997 * 119.99760 * 179.97438 * 22 21 19 40 40 H 1.09011 * 113.46251 * 267.62178 * 27 15 13 41 41 H 1.08993 * 113.46868 * 38.05886 * 27 15 13 42 42 H 1.08994 * 110.79191 * 282.90460 * 28 8 7 43 43 H 1.09002 * 110.79156 * 46.37733 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0567 0.0000 4 7 3.6111 0.6451 -0.0059 5 6 4.7795 1.5288 -0.0131 6 6 3.6417 -0.7005 -0.0041 7 6 2.3360 -1.1428 0.0036 8 6 1.8882 -2.5488 0.0075 9 7 0.6614 -2.9523 0.0142 10 8 0.5466 -4.3615 0.0084 11 6 1.8207 -4.9044 0.4103 12 1 2.0435 -5.8214 -0.1352 13 6 1.8611 -5.1408 1.8980 14 8 0.8786 -4.9207 2.5740 15 7 2.9893 -5.5969 2.4774 16 6 4.3352 -5.9760 2.0217 17 6 4.4203 -6.9214 3.2247 18 8 3.8912 -8.2258 2.9779 19 6 5.7642 -6.9395 3.9063 20 1 5.9211 -6.3628 4.8059 21 6 6.7933 -7.6920 3.3813 22 7 6.6715 -8.2311 2.1880 23 14 8.3608 -7.9458 4.3653 24 1 8.1837 -9.0933 5.2911 25 1 9.4869 -8.2264 3.4388 26 1 8.6578 -6.7194 5.1482 27 6 3.4140 -5.9412 3.8428 28 6 2.7898 -3.7687 0.0045 29 1 -0.3634 0.0027 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3633 -0.8913 -0.5115 32 1 5.0642 1.7465 -1.0425 33 1 4.5349 2.4586 0.5005 34 1 5.6086 1.0389 0.4975 35 1 4.5265 -1.3199 -0.0071 36 1 4.3387 -6.4945 1.0629 37 1 5.0535 -5.1572 2.0614 38 1 4.5430 -8.8583 2.6459 39 1 7.3957 -8.7601 1.8186 40 1 3.8844 -5.1129 4.3728 41 1 2.6360 -6.4300 4.4291 42 1 3.1977 -3.9458 -0.9906 43 1 3.5889 -3.6612 0.7380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362674909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:06 Heat of formation + Delta-G solvation = 59.969369 kcal Electronic energy + Delta-G solvation = -28862.979948 eV Core-core repulsion = 24721.012249 eV Total energy + Delta-G solvation = -4141.967700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54412 -40.39769 -39.09029 -37.11426 -34.58405 -34.13844 -33.04295 -32.39225 -31.16694 -30.36691 -29.29173 -28.46991 -25.98058 -25.65171 -25.18745 -23.79339 -22.45065 -20.50586 -20.27959 -19.39919 -18.58093 -17.57311 -17.13260 -16.83059 -16.03385 -15.94216 -15.66506 -15.21947 -15.19648 -14.56808 -14.32130 -14.17978 -14.02073 -13.74314 -13.47780 -13.17561 -13.13048 -12.80818 -12.67685 -12.60237 -12.38661 -12.29462 -12.10947 -12.06066 -11.84988 -11.78586 -11.13746 -11.04220 -11.01901 -10.60603 -10.53258 -10.37167 -10.32856 -9.55065 -9.48591 -9.12049 -8.95714 -8.48393 -8.31768 -7.95110 -6.49040 -4.58360 1.11136 1.81883 2.09219 2.86136 2.94529 3.09145 3.17436 3.18085 3.20859 3.44992 3.99354 4.10591 4.12445 4.45262 4.55306 4.59383 4.68853 4.75948 4.77382 4.81930 5.02758 5.06216 5.20167 5.35152 5.42467 5.45593 5.56371 5.60811 5.75932 5.83206 5.85357 5.93898 6.09414 6.32623 6.40110 6.41324 6.52862 6.56104 6.62239 6.97585 7.35618 7.50546 7.52484 7.69386 8.38953 8.45809 8.64910 9.13003 9.17411 10.57114 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003231 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.810203 B = 8664.514575 C =10148.503762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.301 5.301 4 N -0.365 5.365 5 C 0.099 3.901 6 C 0.102 3.898 7 C -0.194 4.194 8 C 0.165 3.835 9 N -0.288 5.288 10 O -0.170 6.170 11 C 0.036 3.964 12 H 0.138 0.862 13 C 0.520 3.480 14 O -0.539 6.539 15 N -0.634 5.634 16 C 0.078 3.922 17 C 0.240 3.760 18 O -0.566 6.566 19 C -0.541 4.541 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.889 5.889 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.109 3.891 28 C -0.136 4.136 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.187 0.813 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.387 0.613 39 H 0.272 0.728 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 14.578 -7.966 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.123 5.123 4 N -0.143 5.143 5 C -0.042 4.042 6 C -0.050 4.050 7 C -0.207 4.207 8 C -0.025 4.025 9 N -0.030 5.030 10 O -0.187 6.187 11 C -0.027 4.027 12 H 0.155 0.845 13 C 0.308 3.692 14 O -0.417 6.417 15 N -0.369 5.369 16 C -0.045 4.045 17 C 0.199 3.801 18 O -0.374 6.374 19 C -0.579 4.579 20 H 0.091 0.909 21 C -0.129 4.129 22 N -0.527 5.527 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.013 4.013 28 C -0.176 4.176 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.204 0.796 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.246 16.450 -7.703 18.207 hybrid contribution 2.589 -1.721 0.240 3.118 sum 1.343 14.730 -7.463 16.567 Atomic orbital electron populations 1.20352 0.85668 1.03978 1.03775 1.22569 0.97328 0.88997 0.96056 1.77209 0.86015 1.22526 1.26530 1.48285 1.06110 1.04644 1.55259 1.21985 0.83688 0.94685 1.03833 1.22931 0.98673 0.85113 0.98332 1.17856 0.91931 0.89383 1.21578 1.23226 0.92061 0.92730 0.94517 1.78405 1.18135 0.91999 1.14468 1.91303 1.30019 1.11532 1.85843 1.23446 0.85290 0.99583 0.94340 0.84483 1.20120 0.82371 0.77546 0.89190 1.90690 1.34269 1.52175 1.64536 1.49751 1.11611 1.63032 1.12539 1.24108 0.79418 0.98552 1.02436 1.19463 0.90242 0.80823 0.89619 1.86108 1.41421 1.21869 1.88026 1.21337 0.94419 1.30304 1.11856 0.90932 1.25066 0.98987 0.94464 0.94410 1.69751 1.34459 1.33841 1.14621 0.86428 0.81553 0.79105 0.79940 1.20088 1.21038 1.19631 1.23326 0.96278 0.96960 0.84758 1.22945 1.00021 0.89352 1.05233 0.90008 0.90834 0.88869 0.90242 0.88898 0.88885 0.79590 0.91414 0.90028 0.76200 0.91810 0.89588 0.91516 0.86882 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.03 36.01 0.36 -0.56 16 2 C 0.12 1.55 7.26 -82.02 -0.60 0.96 16 3 N -0.30 -3.82 12.51 33.89 0.42 -3.39 16 4 N -0.36 -3.58 3.99 -67.56 -0.27 -3.85 16 5 C 0.10 0.50 11.45 59.85 0.69 1.18 16 6 C 0.10 1.00 11.35 -16.48 -0.19 0.81 16 7 C -0.19 -2.50 6.12 -105.12 -0.64 -3.15 16 8 C 0.16 2.40 7.27 -79.43 -0.58 1.82 16 9 N -0.29 -4.95 10.71 35.29 0.38 -4.57 16 10 O -0.17 -3.19 11.82 -30.22 -0.36 -3.54 16 11 C 0.04 0.60 4.06 -26.98 -0.11 0.49 16 12 H 0.14 2.01 8.14 -51.93 -0.42 1.59 16 13 C 0.52 10.81 7.42 -10.99 -0.08 10.73 16 14 O -0.54 -13.33 17.36 -13.29 -0.23 -13.56 16 15 N -0.63 -12.85 3.57 -185.37 -0.66 -13.51 16 16 C 0.08 1.52 7.07 -8.64 -0.06 1.46 16 17 C 0.24 5.40 1.41 -91.40 -0.13 5.27 16 18 O -0.57 -13.66 13.56 -35.23 -0.48 -14.14 16 19 C -0.54 -12.72 8.65 -34.44 -0.30 -13.02 16 20 H 0.07 1.68 7.84 -52.48 -0.41 1.27 16 21 C 0.07 1.74 5.21 -17.82 -0.09 1.65 16 22 N -0.89 -21.02 11.81 55.43 0.65 -20.36 16 23 Si 0.90 18.36 29.55 -169.99 -5.02 13.34 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 27 C 0.11 2.30 8.03 -8.51 -0.07 2.23 16 28 C -0.14 -1.77 6.29 -26.49 -0.17 -1.94 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.16 6.70 -51.93 -0.35 0.81 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 38 H 0.39 9.28 7.09 45.56 0.32 9.60 16 39 H 0.27 6.16 8.31 -40.82 -0.34 5.83 16 40 H 0.09 1.66 8.10 -51.92 -0.42 1.24 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.11 1.33 7.17 -51.93 -0.37 0.96 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -32.64 372.46 -6.93 -39.57 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.01 Total: 10.48 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.96 Total: 7.94 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.53 Total: -45.69 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.07 Total: -31.25 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -6.93 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362674909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.536 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds