Wall clock time and date at job start Tue Mar 31 2020 18:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30538 * 125.95659 * 2 1 4 4 N 1.39949 * 108.85313 * 180.25642 * 3 2 1 5 5 C 1.46500 * 125.79399 * 179.74710 * 4 3 2 6 6 C 1.34597 * 108.40598 * 359.75286 * 4 3 2 7 7 C 1.37854 * 107.41053 * 359.97438 * 6 4 3 8 8 C 1.47554 * 126.38070 * 179.97438 * 7 6 4 9 9 N 1.29150 * 125.87439 * 180.02562 * 8 7 6 10 10 O 1.41387 * 112.86236 * 179.64329 * 9 8 7 11 11 C 1.44204 * 107.60039 * 17.49991 * 10 9 8 12 12 H 1.08995 * 110.96917 * 216.46995 * 11 10 9 13 13 C 1.50695 * 110.97298 * 92.69768 * 11 10 9 14 14 O 1.21276 * 120.00014 * 2.63236 * 13 11 10 15 15 N 1.34773 * 119.99944 * 182.63195 * 13 11 10 16 16 C 1.47067 * 136.05861 * 359.62837 * 15 13 11 17 17 C 1.53240 * 88.08390 * 207.20324 * 16 15 13 18 18 O 1.42908 * 114.01455 * 87.71549 * 17 16 15 19 19 C 1.50700 * 114.32818 * 220.46794 * 17 16 15 20 20 H 1.08003 * 119.99710 * 99.23585 * 19 17 16 21 21 C 1.37878 * 119.99990 * 279.23883 * 19 17 16 22 22 N 1.31510 * 120.00145 * 10.19220 * 21 19 17 23 23 Si 1.86803 * 119.99592 * 190.19399 * 21 19 17 24 24 H 1.48496 * 109.47032 * 84.99643 * 23 21 19 25 25 H 1.48503 * 109.46842 * 204.99591 * 23 21 19 26 26 H 1.48501 * 109.47086 * 324.99122 * 23 21 19 27 27 C 1.47073 * 136.05651 * 180.02562 * 15 13 11 28 28 C 1.51693 * 125.86816 * 0.02562 * 8 7 6 29 29 H 1.09001 * 109.47385 * 270.14894 * 1 2 3 30 30 H 1.08998 * 109.47096 * 30.15090 * 1 2 3 31 31 H 1.08998 * 109.47001 * 150.15038 * 1 2 3 32 32 H 1.09004 * 109.47304 * 270.00481 * 5 4 3 33 33 H 1.08999 * 109.47333 * 30.00112 * 5 4 3 34 34 H 1.09004 * 109.46657 * 150.00066 * 5 4 3 35 35 H 1.08000 * 126.29328 * 180.02562 * 6 4 3 36 36 H 1.08998 * 113.46505 * 321.93686 * 16 15 13 37 37 H 1.09000 * 113.46598 * 92.37738 * 16 15 13 38 38 H 0.96700 * 113.99800 * 90.40325 * 18 17 16 39 39 H 0.96997 * 119.99760 * 179.97438 * 22 21 19 40 40 H 1.09011 * 113.46251 * 267.62178 * 27 15 13 41 41 H 1.08993 * 113.46868 * 38.05886 * 27 15 13 42 42 H 1.08994 * 110.79191 * 282.90460 * 28 8 7 43 43 H 1.09002 * 110.79156 * 46.37733 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0567 0.0000 4 7 3.6111 0.6451 -0.0059 5 6 4.7795 1.5288 -0.0131 6 6 3.6417 -0.7005 -0.0041 7 6 2.3360 -1.1428 0.0036 8 6 1.8882 -2.5488 0.0075 9 7 0.6614 -2.9523 0.0142 10 8 0.5466 -4.3615 0.0084 11 6 1.8207 -4.9044 0.4103 12 1 2.0435 -5.8214 -0.1352 13 6 1.8611 -5.1408 1.8980 14 8 0.8786 -4.9207 2.5740 15 7 2.9893 -5.5969 2.4774 16 6 4.3352 -5.9760 2.0217 17 6 4.4203 -6.9214 3.2247 18 8 3.8912 -8.2258 2.9779 19 6 5.7642 -6.9395 3.9063 20 1 5.9211 -6.3628 4.8059 21 6 6.7933 -7.6920 3.3813 22 7 6.6715 -8.2311 2.1880 23 14 8.3608 -7.9458 4.3653 24 1 8.1837 -9.0933 5.2911 25 1 9.4869 -8.2264 3.4388 26 1 8.6578 -6.7194 5.1482 27 6 3.4140 -5.9412 3.8428 28 6 2.7898 -3.7687 0.0045 29 1 -0.3634 0.0027 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3633 -0.8913 -0.5115 32 1 5.0642 1.7465 -1.0425 33 1 4.5349 2.4586 0.5005 34 1 5.6086 1.0389 0.4975 35 1 4.5265 -1.3199 -0.0071 36 1 4.3387 -6.4945 1.0629 37 1 5.0535 -5.1572 2.0614 38 1 4.5430 -8.8583 2.6459 39 1 7.3957 -8.7601 1.8186 40 1 3.8844 -5.1129 4.3728 41 1 2.6360 -6.4300 4.4291 42 1 3.1977 -3.9458 -0.9906 43 1 3.5889 -3.6612 0.7380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362674909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:05 Heat of formation + Delta-G solvation = 36.547761 kcal Electronic energy + Delta-G solvation = -28863.995585 eV Core-core repulsion = 24721.012249 eV Total energy + Delta-G solvation = -4142.983337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41176 -41.76465 -40.57026 -38.77934 -35.92908 -35.42207 -34.19445 -34.08667 -32.46537 -31.19092 -30.16128 -30.02911 -27.35816 -26.82189 -26.64321 -25.13079 -23.32203 -22.02446 -21.24088 -20.54286 -19.98044 -19.27470 -18.35096 -18.11745 -17.27006 -17.14090 -16.86809 -16.64271 -16.46274 -16.07122 -15.76665 -15.39590 -15.01486 -14.81659 -14.55406 -14.45556 -14.36577 -14.08919 -14.00143 -13.76584 -13.54598 -13.42492 -13.26377 -13.14674 -13.04764 -12.99977 -12.78628 -12.68896 -12.22400 -12.14819 -12.03067 -11.77750 -11.42955 -11.10627 -10.82139 -10.58515 -10.34759 -10.16190 -9.63454 -9.32425 -8.24636 -6.39184 0.21147 0.90577 1.39423 1.46548 1.49278 1.55275 1.60909 1.71657 1.97238 2.12986 2.43717 2.94859 2.97361 3.23771 3.28262 3.38395 3.67382 3.74225 3.82110 4.06115 4.09905 4.14551 4.39375 4.39614 4.44145 4.47112 4.49849 4.60108 4.63818 4.69001 4.74255 4.80730 4.85656 4.92129 4.93612 4.98442 5.00552 5.25198 5.49755 5.74118 5.90216 5.92624 6.32984 6.55410 6.65563 6.79505 7.03432 7.33128 7.34274 8.80931 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003231 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.810203 B = 8664.514575 C =10148.503762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.102 3.898 3 N -0.326 5.326 4 N -0.360 5.360 5 C 0.087 3.913 6 C 0.129 3.871 7 C -0.233 4.233 8 C 0.181 3.819 9 N -0.329 5.329 10 O -0.202 6.202 11 C 0.034 3.966 12 H 0.158 0.842 13 C 0.513 3.487 14 O -0.589 6.589 15 N -0.630 5.630 16 C 0.096 3.904 17 C 0.220 3.780 18 O -0.581 6.581 19 C -0.558 4.558 20 H 0.071 0.929 21 C 0.043 3.957 22 N -0.903 5.903 23 Si 0.958 3.042 24 H -0.283 1.283 25 H -0.282 1.282 26 H -0.267 1.267 27 C 0.104 3.896 28 C -0.125 4.125 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.230 0.770 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.384 0.616 39 H 0.274 0.726 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.155 0.845 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 15.811 -8.910 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 N -0.149 5.149 4 N -0.137 5.137 5 C -0.052 4.052 6 C -0.026 4.026 7 C -0.247 4.247 8 C -0.008 4.008 9 N -0.074 5.074 10 O -0.217 6.217 11 C -0.028 4.028 12 H 0.175 0.825 13 C 0.303 3.697 14 O -0.471 6.471 15 N -0.364 5.364 16 C -0.026 4.026 17 C 0.179 3.821 18 O -0.390 6.390 19 C -0.595 4.595 20 H 0.089 0.911 21 C -0.159 4.159 22 N -0.541 5.541 23 Si 0.784 3.216 24 H -0.209 1.209 25 H -0.207 1.207 26 H -0.192 1.192 27 C -0.018 4.018 28 C -0.164 4.164 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.172 0.828 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.002 17.696 -8.661 19.804 hybrid contribution 1.679 -2.010 0.570 2.680 sum 3.680 15.686 -8.091 18.030 Atomic orbital electron populations 1.20301 0.85778 1.04051 1.03404 1.22751 0.97821 0.89581 0.96402 1.77154 0.87596 1.22777 1.27384 1.48747 1.06131 1.05446 1.53378 1.22435 0.82681 0.94484 1.05564 1.23544 0.98735 0.85318 0.94993 1.18043 0.93445 0.88439 1.24761 1.23628 0.91706 0.93950 0.91522 1.78458 1.19828 0.90815 1.18349 1.91272 1.31363 1.13021 1.86022 1.23579 0.86165 1.01833 0.91204 0.82492 1.20998 0.81418 0.76368 0.90941 1.90656 1.35917 1.54358 1.66140 1.49778 1.11961 1.62544 1.12129 1.23956 0.79103 0.98274 1.01252 1.19712 0.90270 0.80544 0.91528 1.86102 1.41762 1.22862 1.88227 1.21494 0.94942 1.30976 1.12135 0.91064 1.25602 1.01144 0.94146 0.95047 1.69797 1.35137 1.33884 1.15261 0.85565 0.78769 0.78636 0.78605 1.20894 1.20709 1.19196 1.23398 0.95650 0.97378 0.85392 1.23028 0.98890 0.86800 1.07676 0.90606 0.89379 0.90101 0.88402 0.88781 0.85888 0.75333 0.90951 0.87877 0.76479 0.91611 0.87681 0.93437 0.82779 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.03 71.24 0.71 -1.13 16 2 C 0.10 2.61 7.26 43.48 0.32 2.93 16 3 N -0.33 -7.83 12.51 -46.70 -0.58 -8.41 16 4 N -0.36 -5.93 3.99 -367.67 -1.47 -7.40 16 5 C 0.09 0.54 11.45 127.77 1.46 2.00 16 6 C 0.13 2.03 11.35 84.18 0.96 2.98 16 7 C -0.23 -5.60 6.12 -20.19 -0.12 -5.72 16 8 C 0.18 5.03 7.27 45.73 0.33 5.36 16 9 N -0.33 -11.46 10.71 -42.26 -0.45 -11.92 16 10 O -0.20 -7.72 11.82 -20.28 -0.24 -7.96 16 11 C 0.03 1.11 4.06 30.43 0.12 1.24 16 12 H 0.16 4.35 8.14 -2.39 -0.02 4.33 16 13 C 0.51 21.28 7.42 87.66 0.65 21.93 16 14 O -0.59 -30.03 17.36 15.01 0.26 -29.77 16 15 N -0.63 -24.95 3.57 -859.26 -3.06 -28.02 16 16 C 0.10 3.56 7.07 83.10 0.59 4.15 16 17 C 0.22 9.73 1.41 -11.30 -0.02 9.71 16 18 O -0.58 -28.07 13.56 -148.98 -2.02 -30.09 16 19 C -0.56 -25.47 8.65 25.60 0.22 -25.25 16 20 H 0.07 3.20 7.84 -2.91 -0.02 3.18 16 21 C 0.04 1.94 5.21 84.66 0.44 2.38 16 22 N -0.90 -41.24 11.81 21.45 0.25 -40.98 16 23 Si 0.96 36.34 29.55 68.60 2.03 38.37 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 26 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 27 C 0.10 4.37 8.03 83.17 0.67 5.04 16 28 C -0.12 -2.89 6.29 30.75 0.19 -2.70 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.13 6.70 -2.39 -0.02 2.11 16 32 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.23 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.10 3.40 8.10 -2.39 -0.02 3.38 16 38 H 0.38 18.45 7.09 -74.06 -0.53 17.93 16 39 H 0.27 11.97 8.31 -92.71 -0.77 11.20 16 40 H 0.11 3.94 8.10 -2.38 -0.02 3.92 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.12 2.49 7.17 -2.39 -0.02 2.47 16 Total: -1.00 -72.84 372.46 1.77 -71.06 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.53 Total: 32.20 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.53 Total: 22.92 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -5.31 Total: -96.73 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -2.00 Total: -67.82 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -72.84 1.77 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362674909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.611 kcal (2) G-P(sol) polarization free energy of solvation -72.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds