Wall clock time and date at job start Tue Mar 31 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39674 * 127.32041 * 2 1 4 4 C 1.50698 * 126.06872 * 0.03702 * 3 2 1 5 5 F 1.39899 * 109.47071 * 185.25820 * 4 3 2 6 6 F 1.39899 * 109.47040 * 305.25411 * 4 3 2 7 7 F 1.39895 * 109.47484 * 65.25647 * 4 3 2 8 8 N 1.30865 * 107.86242 * 180.27207 * 3 2 1 9 9 N 1.28443 * 110.92626 * 359.77767 * 8 3 2 10 10 H 0.96996 * 125.19088 * 180.02562 * 9 8 3 11 11 C 1.36601 * 109.62139 * 359.97438 * 9 8 3 12 12 C 1.47159 * 126.88332 * 179.97438 * 11 9 8 13 13 O 1.21636 * 119.99888 * 180.02562 * 12 11 9 14 14 N 1.34773 * 120.00515 * 0.03240 * 12 11 9 15 15 C 1.46490 * 120.00384 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47559 * 179.97438 * 15 14 12 17 17 H 1.09008 * 109.46613 * 54.99525 * 16 15 14 18 18 C 1.53001 * 109.47108 * 295.00069 * 16 15 14 19 19 C 1.52996 * 109.47530 * 174.99686 * 16 15 14 20 20 N 1.46498 * 109.47059 * 184.99929 * 19 16 15 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.08996 * 109.47067 * 270.09028 * 1 2 3 30 30 H 1.09000 * 109.47420 * 30.09215 * 1 2 3 31 31 H 1.09005 * 109.47062 * 150.09646 * 1 2 3 32 32 H 0.97002 * 119.99300 * 359.97438 * 14 12 11 33 33 H 1.08998 * 109.47374 * 59.99359 * 15 14 12 34 34 H 1.09002 * 109.47263 * 299.99603 * 15 14 12 35 35 H 1.08995 * 109.46988 * 299.99895 * 18 16 15 36 36 H 1.09001 * 109.46786 * 59.99727 * 18 16 15 37 37 H 1.09001 * 109.47309 * 179.97438 * 18 16 15 38 38 H 1.09004 * 109.47066 * 65.00196 * 19 16 15 39 39 H 1.08994 * 109.46974 * 305.00344 * 19 16 15 40 40 H 0.97001 * 120.00384 * 0.02562 * 20 19 16 41 41 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 6 1.9230 2.5549 0.0008 5 9 3.0482 3.3772 -0.1203 6 9 1.0596 2.7845 -1.0758 7 9 1.2613 2.8435 1.1991 8 7 3.5877 0.6748 -0.0059 9 7 3.6206 -0.6092 -0.0051 10 1 4.4274 -1.1477 -0.0084 11 6 2.3461 -1.1007 0.0023 12 6 1.9456 -2.5167 0.0051 13 8 0.7665 -2.8152 0.0115 14 7 2.8852 -3.4829 0.0008 15 6 2.4865 -4.8925 0.0042 16 6 3.7357 -5.7760 -0.0025 17 1 4.3776 -5.5038 0.8354 18 6 4.4964 -5.5737 -1.3145 19 6 3.3231 -7.2436 0.1268 20 7 4.5210 -8.0794 0.2404 21 6 4.3986 -9.4368 0.3729 22 1 3.4192 -9.8917 0.3892 23 6 5.5334 -10.2282 0.4863 24 7 5.4159 -11.5329 0.6132 25 14 7.2274 -9.4413 0.4589 26 1 7.6342 -9.0936 1.8441 27 1 8.2070 -10.3954 -0.1199 28 1 7.1876 -8.2094 -0.3694 29 1 -0.3633 0.0016 1.0276 30 1 -0.3634 0.8891 -0.5153 31 1 -0.3633 -0.8909 -0.5124 32 1 3.8256 -3.2448 -0.0045 33 1 1.8882 -5.1030 -0.8823 34 1 1.8981 -5.1016 0.8976 35 1 3.8544 -5.8457 -2.1523 36 1 4.7903 -4.5281 -1.4065 37 1 5.3865 -6.2027 -1.3191 38 1 2.7553 -7.5405 -0.7551 39 1 2.7058 -7.3705 1.0160 40 1 5.4006 -7.6708 0.2261 41 1 6.2089 -12.0860 0.6921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495755026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:27 Heat of formation + Delta-G solvation = -107.870975 kcal Electronic energy + Delta-G solvation = -28184.229422 eV Core-core repulsion = 23493.126879 eV Total energy + Delta-G solvation = -4691.102543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.54732 -48.06798 -48.03766 -43.46272 -39.91125 -37.22096 -34.93589 -33.97776 -32.91602 -32.19302 -30.64060 -28.35926 -27.02048 -26.85870 -25.80160 -23.45707 -22.16408 -21.65203 -20.94579 -20.33085 -19.32721 -18.95490 -18.70459 -17.99113 -17.59324 -16.64631 -16.45485 -16.15037 -15.58731 -14.90832 -14.87953 -14.74274 -14.50811 -14.46714 -14.29451 -14.19992 -14.17681 -13.93110 -13.76684 -13.37784 -13.35846 -13.05892 -12.79975 -12.72014 -12.61863 -12.35586 -11.58507 -11.50789 -11.19443 -10.89652 -10.81546 -10.79540 -10.45548 -10.39742 -10.20614 -9.67466 -9.66203 -9.38642 -8.98936 -7.32599 -5.84120 -3.20614 0.53754 1.34129 1.66777 2.27050 2.60152 2.66825 3.16549 3.27652 3.30547 3.37831 3.47186 3.94878 4.01039 4.25047 4.42961 4.50673 4.59670 4.69204 4.89420 5.03067 5.23193 5.33510 5.44762 5.47831 5.48889 5.58266 5.65350 5.68183 5.80664 5.90366 5.99988 6.04721 6.11592 6.30191 6.52052 6.60454 6.86581 7.01103 7.62310 7.91330 8.34378 9.12684 9.84575 10.03473 11.34158 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.001983 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.856494 B =14117.977842 C =14759.292470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.070 4.070 3 C -0.074 4.074 4 C 0.562 3.438 5 F -0.166 7.166 6 F -0.166 7.166 7 F -0.166 7.166 8 N -0.206 5.206 9 N -0.355 5.355 10 H 0.454 0.546 11 C -0.033 4.033 12 C 0.590 3.410 13 O -0.508 6.508 14 N -0.720 5.720 15 C 0.127 3.873 16 C -0.116 4.116 17 H 0.077 0.923 18 C -0.145 4.145 19 C 0.165 3.835 20 N -0.754 5.754 21 C -0.246 4.246 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.932 5.932 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.395 0.605 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 29.904 -2.216 30.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.232 4.232 4 C 0.506 3.494 5 F -0.147 7.147 6 F -0.147 7.147 7 F -0.148 7.148 8 N -0.042 5.042 9 N -0.074 5.074 10 H 0.301 0.699 11 C -0.160 4.160 12 C 0.373 3.627 13 O -0.382 6.382 14 N -0.371 5.371 15 C 0.004 3.996 16 C -0.135 4.135 17 H 0.095 0.905 18 C -0.202 4.202 19 C 0.037 3.963 20 N -0.400 5.400 21 C -0.376 4.376 22 H 0.109 0.891 23 C -0.192 4.192 24 N -0.580 5.580 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.228 0.772 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.114 29.782 -2.205 30.483 hybrid contribution 1.646 0.165 0.017 1.654 sum -4.469 29.946 -2.188 30.357 Atomic orbital electron populations 1.20486 0.86552 1.04502 1.03768 1.20508 0.97870 0.88529 1.01146 1.21591 0.91343 0.94200 1.16068 1.16681 0.75046 0.83548 0.74138 1.93237 1.51512 1.74368 1.95630 1.93236 1.70619 1.95083 1.55791 1.93250 1.81261 1.94110 1.46137 1.73066 1.21655 0.94129 1.15340 1.43619 1.08348 1.03831 1.51644 0.69859 1.21667 0.84798 0.95350 1.14223 1.16746 0.86116 0.82199 0.77597 1.90869 1.16538 1.81743 1.49032 1.45945 1.08942 1.07290 1.74943 1.21532 0.97404 0.77269 1.03396 1.21637 0.95831 0.97010 0.99037 0.90488 1.21838 1.01310 1.00095 0.96984 1.20543 0.90374 0.86304 0.99050 1.42671 1.02449 1.04543 1.90349 1.19051 0.95084 0.80948 1.42515 0.89128 1.24687 0.97324 0.95226 1.01921 1.69696 1.28536 1.03089 1.56670 0.86546 0.85751 0.78390 0.77724 1.21097 1.21670 1.20468 0.89866 0.90755 0.88712 0.77151 0.90419 0.90391 0.92128 0.93967 0.91538 0.95014 0.95091 0.80655 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.75 36.01 0.35 -0.44 16 2 C -0.07 -0.66 6.29 -104.02 -0.65 -1.31 16 3 C -0.07 -0.70 6.50 -82.47 -0.54 -1.23 16 4 C 0.56 5.00 3.32 36.00 0.12 5.12 16 5 F -0.17 -1.57 17.14 2.25 0.04 -1.53 16 6 F -0.17 -1.43 16.34 2.25 0.04 -1.39 16 7 F -0.17 -1.47 17.30 2.25 0.04 -1.43 16 8 N -0.21 -1.85 11.93 33.64 0.40 -1.45 16 9 N -0.35 -2.43 6.85 33.48 0.23 -2.20 16 10 H 0.45 1.48 8.22 -190.46 -1.57 -0.09 16 11 C -0.03 -0.29 7.16 -82.06 -0.59 -0.88 16 12 C 0.59 5.92 7.80 -12.64 -0.10 5.82 16 13 O -0.51 -6.68 15.06 5.25 0.08 -6.60 16 14 N -0.72 -6.01 5.28 -61.47 -0.32 -6.33 16 15 C 0.13 1.33 5.06 -4.05 -0.02 1.31 16 16 C -0.12 -1.41 2.46 -90.62 -0.22 -1.63 16 17 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 18 C -0.14 -1.67 8.94 37.16 0.33 -1.34 16 19 C 0.17 2.84 5.65 -4.04 -0.02 2.82 16 20 N -0.75 -16.72 5.13 -59.91 -0.31 -17.03 16 21 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 24 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 25 Si 0.89 21.27 27.74 -169.99 -4.71 16.55 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.52 7.13 -51.93 -0.37 0.15 16 31 H 0.09 0.87 6.68 -51.93 -0.35 0.52 16 32 H 0.39 2.20 6.84 -40.82 -0.28 1.92 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.35 7.18 -51.93 -0.37 -0.02 16 37 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.36 7.70 4.71 -40.82 -0.19 7.50 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -33.29 357.70 -6.00 -39.29 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.05 Total: 3.32 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.59 Total: 1.37 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.77 Total: -54.97 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.08 Total: -6.60 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.11 Total: -4.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.29 -6.00 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495755026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.580 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds