Wall clock time and date at job start Tue Mar 31 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39674 * 127.32041 * 2 1 4 4 C 1.50698 * 126.06872 * 0.03702 * 3 2 1 5 5 F 1.39899 * 109.47071 * 185.25820 * 4 3 2 6 6 F 1.39899 * 109.47040 * 305.25411 * 4 3 2 7 7 F 1.39895 * 109.47484 * 65.25647 * 4 3 2 8 8 N 1.30865 * 107.86242 * 180.27207 * 3 2 1 9 9 N 1.28443 * 110.92626 * 359.77767 * 8 3 2 10 10 H 0.96996 * 125.19088 * 180.02562 * 9 8 3 11 11 C 1.36601 * 109.62139 * 359.97438 * 9 8 3 12 12 C 1.47159 * 126.88332 * 179.97438 * 11 9 8 13 13 O 1.21636 * 119.99888 * 180.02562 * 12 11 9 14 14 N 1.34773 * 120.00515 * 0.03240 * 12 11 9 15 15 C 1.46490 * 120.00384 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47559 * 179.97438 * 15 14 12 17 17 H 1.09008 * 109.46613 * 54.99525 * 16 15 14 18 18 C 1.53001 * 109.47108 * 295.00069 * 16 15 14 19 19 C 1.52996 * 109.47530 * 174.99686 * 16 15 14 20 20 N 1.46498 * 109.47059 * 184.99929 * 19 16 15 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.08996 * 109.47067 * 270.09028 * 1 2 3 30 30 H 1.09000 * 109.47420 * 30.09215 * 1 2 3 31 31 H 1.09005 * 109.47062 * 150.09646 * 1 2 3 32 32 H 0.97002 * 119.99300 * 359.97438 * 14 12 11 33 33 H 1.08998 * 109.47374 * 59.99359 * 15 14 12 34 34 H 1.09002 * 109.47263 * 299.99603 * 15 14 12 35 35 H 1.08995 * 109.46988 * 299.99895 * 18 16 15 36 36 H 1.09001 * 109.46786 * 59.99727 * 18 16 15 37 37 H 1.09001 * 109.47309 * 179.97438 * 18 16 15 38 38 H 1.09004 * 109.47066 * 65.00196 * 19 16 15 39 39 H 1.08994 * 109.46974 * 305.00344 * 19 16 15 40 40 H 0.97001 * 120.00384 * 0.02562 * 20 19 16 41 41 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 6 1.9230 2.5549 0.0008 5 9 3.0482 3.3772 -0.1203 6 9 1.0596 2.7845 -1.0758 7 9 1.2613 2.8435 1.1991 8 7 3.5877 0.6748 -0.0059 9 7 3.6206 -0.6092 -0.0051 10 1 4.4274 -1.1477 -0.0084 11 6 2.3461 -1.1007 0.0023 12 6 1.9456 -2.5167 0.0051 13 8 0.7665 -2.8152 0.0115 14 7 2.8852 -3.4829 0.0008 15 6 2.4865 -4.8925 0.0042 16 6 3.7357 -5.7760 -0.0025 17 1 4.3776 -5.5038 0.8354 18 6 4.4964 -5.5737 -1.3145 19 6 3.3231 -7.2436 0.1268 20 7 4.5210 -8.0794 0.2404 21 6 4.3986 -9.4368 0.3729 22 1 3.4192 -9.8917 0.3892 23 6 5.5334 -10.2282 0.4863 24 7 5.4159 -11.5329 0.6132 25 14 7.2274 -9.4413 0.4589 26 1 7.6342 -9.0936 1.8441 27 1 8.2070 -10.3954 -0.1199 28 1 7.1876 -8.2094 -0.3694 29 1 -0.3633 0.0016 1.0276 30 1 -0.3634 0.8891 -0.5153 31 1 -0.3633 -0.8909 -0.5124 32 1 3.8256 -3.2448 -0.0045 33 1 1.8882 -5.1030 -0.8823 34 1 1.8981 -5.1016 0.8976 35 1 3.8544 -5.8457 -2.1523 36 1 4.7903 -4.5281 -1.4065 37 1 5.3865 -6.2027 -1.3191 38 1 2.7553 -7.5405 -0.7551 39 1 2.7058 -7.3705 1.0160 40 1 5.4006 -7.6708 0.2261 41 1 6.2089 -12.0860 0.6921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495755026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:26 Heat of formation + Delta-G solvation = -132.051344 kcal Electronic energy + Delta-G solvation = -28185.277962 eV Core-core repulsion = 23493.126879 eV Total energy + Delta-G solvation = -4692.151083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.23033 -48.74463 -48.73067 -44.12032 -40.74426 -38.38416 -36.22212 -34.82529 -34.18621 -33.17129 -32.27264 -29.07806 -27.87469 -27.68469 -27.17901 -24.58730 -23.52311 -22.46825 -21.79819 -21.30677 -20.22882 -19.63475 -19.53726 -19.28003 -18.64262 -17.42959 -17.28714 -16.94838 -16.49341 -16.44269 -15.82451 -15.59725 -15.52392 -15.41851 -15.15655 -15.12711 -14.89701 -14.86575 -14.86277 -14.48921 -14.20276 -14.00078 -13.84938 -13.73698 -13.63056 -13.39791 -13.21230 -12.88324 -12.19549 -12.17976 -12.14666 -12.02369 -11.76531 -11.71656 -11.34557 -11.04723 -10.98286 -10.43223 -10.11305 -9.29735 -8.02583 -5.36687 -0.15408 0.64719 1.07143 1.36572 1.42281 1.49614 1.57418 1.89138 1.90801 2.48708 2.49212 2.79168 3.27427 3.28794 3.35210 3.52185 3.59157 3.76962 3.92711 3.93370 4.01546 4.12324 4.50248 4.55777 4.68711 4.72349 4.74972 4.87625 4.92255 4.99823 5.08012 5.13499 5.27420 5.31434 5.44509 5.51901 5.76134 6.20797 6.21606 6.35343 6.89003 7.08422 7.83502 8.03419 9.18967 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.001983 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.856494 B =14117.977842 C =14759.292470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.080 4.080 3 C -0.086 4.086 4 C 0.565 3.435 5 F -0.170 7.170 6 F -0.165 7.165 7 F -0.167 7.167 8 N -0.211 5.211 9 N -0.332 5.332 10 H 0.470 0.530 11 C -0.035 4.035 12 C 0.595 3.405 13 O -0.542 6.542 14 N -0.705 5.705 15 C 0.137 3.863 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.145 4.145 19 C 0.157 3.843 20 N -0.754 5.754 21 C -0.236 4.236 22 H 0.053 0.947 23 C -0.069 4.069 24 N -0.986 5.986 25 Si 0.959 3.041 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.244 1.244 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.411 0.589 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.368 0.632 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 32.591 -2.458 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.243 4.243 4 C 0.509 3.491 5 F -0.151 7.151 6 F -0.146 7.146 7 F -0.148 7.148 8 N -0.048 5.048 9 N -0.055 5.055 10 H 0.321 0.679 11 C -0.162 4.162 12 C 0.379 3.621 13 O -0.418 6.418 14 N -0.357 5.357 15 C 0.013 3.987 16 C -0.118 4.118 17 H 0.109 0.891 18 C -0.202 4.202 19 C 0.031 3.969 20 N -0.401 5.401 21 C -0.367 4.367 22 H 0.071 0.929 23 C -0.260 4.260 24 N -0.636 5.636 25 Si 0.786 3.214 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.168 1.168 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.202 0.798 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.602 32.531 -2.456 32.947 hybrid contribution 1.063 -0.689 0.093 1.270 sum -3.539 31.843 -2.364 32.126 Atomic orbital electron populations 1.20481 0.86200 1.04427 1.04053 1.20705 0.98428 0.88794 1.01120 1.21618 0.91503 0.94316 1.16836 1.16634 0.74924 0.83442 0.74121 1.93227 1.51749 1.74490 1.95656 1.93236 1.70571 1.95081 1.55748 1.93248 1.81254 1.94118 1.46180 1.73045 1.21503 0.94864 1.15406 1.43636 1.08457 1.03314 1.50081 0.67890 1.21406 0.85505 0.94527 1.14798 1.16796 0.85698 0.82655 0.76928 1.90865 1.18036 1.82265 1.50635 1.45688 1.09718 1.06082 1.74190 1.21266 0.96360 0.78041 1.03030 1.21419 0.96704 0.93483 1.00241 0.89089 1.21841 1.00093 1.02202 0.96054 1.20723 0.88697 0.89119 0.98389 1.42626 1.04421 1.02952 1.90053 1.19029 0.93547 0.83415 1.40733 0.92866 1.25598 1.02171 0.95717 1.02515 1.69899 1.29645 1.05110 1.58959 0.85358 0.79313 0.78380 0.78386 1.20371 1.22600 1.16802 0.89414 0.89761 0.89796 0.75157 0.90829 0.91028 0.92688 0.90088 0.93501 0.95633 0.95597 0.79773 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.75 71.24 0.69 -0.76 16 2 C -0.08 -1.37 6.29 -19.48 -0.12 -1.49 16 3 C -0.09 -1.46 6.50 43.05 0.28 -1.18 16 4 C 0.56 9.29 3.32 71.24 0.24 9.53 16 5 F -0.17 -2.98 17.14 44.97 0.77 -2.21 16 6 F -0.17 -2.64 16.34 44.97 0.73 -1.90 16 7 F -0.17 -2.74 17.30 44.97 0.78 -1.96 16 8 N -0.21 -3.29 11.93 -47.49 -0.57 -3.86 16 9 N -0.33 -3.55 6.85 -47.99 -0.33 -3.88 16 10 H 0.47 1.26 8.22 -220.01 -1.81 -0.55 16 11 C -0.03 -0.53 7.16 40.79 0.29 -0.24 16 12 C 0.59 10.61 7.80 86.59 0.68 11.29 16 13 O -0.54 -13.59 15.06 -4.15 -0.06 -13.65 16 14 N -0.70 -9.51 5.28 -466.65 -2.46 -11.98 16 15 C 0.14 2.54 5.06 86.38 0.44 2.98 16 16 C -0.10 -2.14 2.46 -10.79 -0.03 -2.16 16 17 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 18 C -0.14 -2.83 8.94 71.98 0.64 -2.19 16 19 C 0.16 5.26 5.65 86.38 0.49 5.75 16 20 N -0.75 -32.55 5.13 -343.46 -1.76 -34.32 16 21 C -0.24 -13.10 10.47 84.03 0.88 -12.22 16 22 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.99 -62.45 13.97 21.65 0.30 -62.15 16 25 Si 0.96 43.33 27.74 68.60 1.90 45.23 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.24 -9.51 6.52 99.48 0.65 -8.86 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.09 7.13 -2.39 -0.02 1.07 16 31 H 0.08 1.50 6.68 -2.38 -0.02 1.48 16 32 H 0.41 2.78 6.84 -92.71 -0.63 2.15 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 0.96 7.18 -2.39 -0.02 0.94 16 37 H 0.05 1.13 7.18 -2.39 -0.02 1.11 16 38 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.37 14.72 4.71 -92.71 -0.44 14.28 16 41 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -73.58 357.70 2.44 -71.14 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -1.81 Total: 13.75 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 4.95 Total: 5.80 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.82 Total: -116.19 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.06 Total: -13.65 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 2.28 Total: -6.08 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.90 Total: 45.23 kcal Total: -73.58 2.44 -71.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495755026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.911 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds