Wall clock time and date at job start Tue Mar 31 2020 17:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99701 * 2 1 4 4 H 1.48503 * 109.46858 * 270.00023 * 3 2 1 5 5 H 1.48496 * 109.47189 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00284 * 3 2 1 7 7 C 1.38948 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00191 * 359.97438 * 7 2 1 9 9 N 1.37104 * 119.99620 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99829 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00113 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99689 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.46917 * 179.97438 * 12 10 9 14 14 C 1.48565 * 110.99899 * 189.99966 * 13 12 10 15 15 C 1.54376 * 104.59130 * 200.95940 * 14 13 12 16 16 H 1.09003 * 118.16185 * 244.14696 * 15 14 13 17 17 C 1.53006 * 118.12820 * 87.23144 * 15 14 13 18 18 H 1.08995 * 117.41011 * 15.98964 * 17 15 14 19 19 C 1.52999 * 117.44270 * 160.68468 * 17 15 14 20 20 N 1.46502 * 109.47204 * 244.22582 * 19 17 15 21 21 C 1.34774 * 120.00484 * 179.97438 * 20 19 17 22 22 O 1.21685 * 119.99814 * 0.02562 * 21 20 19 23 23 C 1.46723 * 120.00255 * 180.02562 * 21 20 19 24 24 C 1.36340 * 126.64291 * 180.02562 * 23 21 20 25 25 N 1.33691 * 107.45240 * 179.97438 * 24 23 21 26 26 C 1.30621 * 108.99345 * 359.97438 * 25 24 23 27 27 O 1.33666 * 109.15707 * 359.75165 * 26 25 24 28 28 C 1.53003 * 60.54487 * 268.32654 * 17 15 14 29 29 H 1.09002 * 119.52639 * 248.25951 * 28 17 15 30 30 C 1.52142 * 110.66603 * 74.51177 * 13 12 10 31 31 H 0.97000 * 119.99546 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99750 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47493 * 59.99902 * 12 10 9 34 34 H 1.08994 * 109.47372 * 299.99466 * 12 10 9 35 35 H 1.08999 * 110.40820 * 82.18082 * 14 13 12 36 36 H 1.08994 * 110.40763 * 319.73488 * 14 13 12 37 37 H 1.09003 * 109.47056 * 4.22373 * 19 17 15 38 38 H 1.09002 * 109.47599 * 124.22650 * 19 17 15 39 39 H 0.97004 * 119.99503 * 0.02562 * 20 19 17 40 40 H 1.08002 * 126.27462 * 359.95491 * 24 23 21 41 41 H 1.08003 * 125.41840 * 179.97438 * 26 25 24 42 42 H 1.08997 * 110.22960 * 41.38615 * 30 13 12 43 43 H 1.09003 * 112.21772 * 277.81960 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0020 12 6 5.5607 -2.3704 -0.0011 13 7 6.0504 -3.7555 -0.0017 14 6 7.5157 -3.8022 0.2391 15 6 7.9567 -5.1753 -0.3115 16 1 8.3607 -5.9053 0.3900 17 6 8.3176 -5.2755 -1.7950 18 1 8.5056 -4.3444 -2.3296 19 6 9.1648 -6.4710 -2.2355 20 7 10.4575 -5.9959 -2.7349 21 6 11.3738 -6.8785 -3.1799 22 8 11.1271 -8.0700 -3.1672 23 6 12.6687 -6.4027 -3.6795 24 6 13.6879 -7.1708 -4.1590 25 7 14.6810 -6.3468 -4.5082 26 6 14.3172 -5.1159 -4.2658 27 8 13.0799 -5.1157 -3.7600 28 6 6.8809 -5.5553 -1.3497 29 1 6.4840 -6.5680 -1.4210 30 6 5.8710 -4.3878 -1.3738 31 1 -0.4849 0.8401 0.0004 32 1 3.8648 -0.3633 0.0004 33 1 5.9241 -1.8574 0.8894 34 1 5.9241 -1.8559 -0.8906 35 1 7.7279 -3.7345 1.3061 36 1 8.0154 -2.9979 -0.3006 37 1 9.3253 -7.1351 -1.3862 38 1 8.6462 -7.0120 -3.0269 39 1 10.6543 -5.0461 -2.7446 40 1 13.6923 -8.2477 -4.2413 41 1 14.9189 -4.2378 -4.4486 42 1 6.1334 -3.6743 -2.1548 43 1 4.8591 -4.7636 -1.5253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570946434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:21 Heat of formation + Delta-G solvation = 10.657650 kcal Electronic energy + Delta-G solvation = -26980.643399 eV Core-core repulsion = 22836.537383 eV Total energy + Delta-G solvation = -4144.106016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99009 -40.39508 -39.68410 -38.19181 -35.89344 -35.35582 -34.14748 -33.59752 -31.66728 -31.21870 -28.90195 -28.42021 -26.77132 -24.66212 -23.92579 -23.21777 -21.89580 -21.45653 -20.70653 -20.30635 -19.33250 -19.01371 -18.24967 -17.43811 -17.40553 -16.70913 -16.13204 -15.72860 -15.52874 -15.16146 -14.88668 -14.85746 -14.58660 -14.33454 -13.97706 -13.75948 -13.58477 -13.29460 -13.05557 -12.82794 -12.47903 -12.28609 -12.09849 -11.93950 -11.57019 -11.48196 -11.46285 -11.27002 -11.03754 -10.89309 -10.61419 -10.26699 -10.15049 -9.98541 -9.81019 -9.56719 -9.48836 -8.64839 -8.19791 -8.13785 -6.31670 -3.83065 0.25316 1.85101 1.87488 2.55879 2.57724 3.00764 3.04638 3.13352 3.29937 3.57057 3.72498 3.84859 4.08910 4.12205 4.23704 4.35921 4.41025 4.68264 4.76213 4.83823 4.90595 4.97238 5.02446 5.07953 5.17828 5.24684 5.30342 5.42606 5.50253 5.57522 5.59357 5.66433 5.68144 5.84524 5.91108 5.96180 6.01238 6.28731 6.73574 6.79991 6.99392 7.01826 7.47059 7.57690 8.13818 8.59881 8.94942 9.41932 9.83364 10.81536 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.001763 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.247209 B =15880.965250 C =16643.020252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.454 3.546 11 O -0.557 6.557 12 C 0.030 3.970 13 N -0.483 5.483 14 C 0.059 3.941 15 C -0.152 4.152 16 H 0.120 0.880 17 C -0.148 4.148 18 H 0.107 0.893 19 C 0.153 3.847 20 N -0.713 5.713 21 C 0.608 3.392 22 O -0.514 6.514 23 C -0.110 4.110 24 C 0.054 3.946 25 N -0.495 5.495 26 C 0.203 3.797 27 O -0.192 6.192 28 C -0.141 4.141 29 H 0.121 0.879 30 C 0.066 3.934 31 H 0.273 0.727 32 H 0.369 0.631 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.407 0.593 40 H 0.198 0.802 41 H 0.258 0.742 42 H 0.044 0.956 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.116 -6.481 -6.992 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.240 3.760 11 O -0.438 6.438 12 C -0.103 4.103 13 N -0.207 5.207 14 C -0.069 4.069 15 C -0.171 4.171 16 H 0.138 0.862 17 C -0.167 4.167 18 H 0.125 0.875 19 C 0.030 3.970 20 N -0.364 5.364 21 C 0.393 3.607 22 O -0.391 6.391 23 C -0.166 4.166 24 C -0.089 4.089 25 N -0.223 5.223 26 C -0.022 4.022 27 O -0.078 6.078 28 C -0.161 4.161 29 H 0.139 0.861 30 C -0.060 4.060 31 H 0.084 0.916 32 H 0.202 0.798 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.242 0.758 40 H 0.215 0.785 41 H 0.273 0.727 42 H 0.063 0.937 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 28.495 -8.303 -6.763 30.440 hybrid contribution 0.607 2.762 -0.328 2.847 sum 29.102 -5.541 -7.090 30.461 Atomic orbital electron populations 1.69625 1.05617 1.27445 1.49513 1.25035 0.95487 0.97931 0.97743 0.86676 0.79787 0.84131 0.78804 1.19706 1.20177 1.19537 1.19426 0.79214 0.96616 1.47998 0.86278 1.42210 1.07521 1.06093 1.67475 1.19580 0.87916 0.84570 0.83971 1.90557 1.69297 1.30844 1.53099 1.22089 0.96090 0.90383 1.01695 1.66252 1.11535 1.15741 1.27219 1.22649 0.88735 0.94157 1.01329 1.23579 1.03541 0.99258 0.90674 0.86172 1.22658 0.97420 0.99385 0.97234 0.87505 1.20951 0.81378 0.94947 0.99736 1.45887 1.16182 1.10495 1.63797 1.16308 0.80788 0.85793 0.77826 1.90931 1.77515 1.14881 1.55751 1.23197 0.99334 0.81567 1.12488 1.23660 0.87446 1.01686 0.96060 1.70490 1.29901 1.00898 1.20997 1.28494 0.81556 0.98472 0.93672 1.84508 1.31077 1.29079 1.63099 1.23484 0.88367 1.00986 1.03220 0.86070 1.23335 1.00073 0.93569 0.89062 0.91641 0.79802 0.89184 0.93107 0.89421 0.93958 0.90341 0.90042 0.75764 0.78490 0.72658 0.93743 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.96 5.09 -10.97 -0.06 -14.01 16 10 C 0.45 10.17 7.63 -10.99 -0.08 10.09 16 11 O -0.56 -14.76 14.90 5.55 0.08 -14.68 16 12 C 0.03 0.48 5.32 -4.97 -0.03 0.45 16 13 N -0.48 -7.40 5.03 -228.13 -1.15 -8.55 16 14 C 0.06 0.66 6.27 -2.18 -0.01 0.64 16 15 C -0.15 -1.45 6.74 -89.24 -0.60 -2.05 16 16 H 0.12 1.05 8.12 -51.93 -0.42 0.62 16 17 C -0.15 -1.19 5.38 -90.62 -0.49 -1.68 16 18 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 19 C 0.15 1.17 5.95 -4.04 -0.02 1.15 16 20 N -0.71 -5.14 5.55 -61.60 -0.34 -5.48 16 21 C 0.61 5.56 7.79 -12.83 -0.10 5.46 16 22 O -0.51 -6.25 16.89 5.20 0.09 -6.16 16 23 C -0.11 -0.87 7.18 -36.84 -0.26 -1.14 16 24 C 0.05 0.43 11.66 -17.43 -0.20 0.22 16 25 N -0.49 -3.73 11.26 -14.67 -0.17 -3.90 16 26 C 0.20 0.92 13.21 52.25 0.69 1.61 16 27 O -0.19 -1.17 10.57 4.42 0.05 -1.13 16 28 C -0.14 -1.51 6.75 -89.23 -0.60 -2.11 16 29 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 30 C 0.07 0.94 5.91 -0.11 0.00 0.94 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 33 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.05 0.71 7.80 -51.93 -0.41 0.31 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 37 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 2.20 8.20 -40.82 -0.33 1.87 16 40 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.26 -0.19 8.06 -52.48 -0.42 -0.61 16 42 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 43 H 0.11 1.79 7.41 -51.93 -0.38 1.41 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -36.05 370.56 -7.33 -43.39 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.52 Total: 9.46 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.97 Total: 5.91 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.94 Total: -56.81 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.22 Total: -21.96 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.05 -7.33 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570946434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.043 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds