Wall clock time and date at job start Tue Mar 31 2020 17:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33976 * 125.10727 * 2 1 4 4 C 1.34426 * 111.41079 * 179.97438 * 3 2 1 5 5 N 1.33030 * 134.04368 * 180.02562 * 4 3 2 6 6 C 1.31598 * 120.72967 * 179.97438 * 5 4 3 7 7 N 1.32026 * 122.67137 * 0.06973 * 6 5 4 8 8 C 1.32904 * 120.87772 * 359.96545 * 7 6 5 9 9 O 1.35472 * 120.82361 * 179.97438 * 8 7 6 10 10 C 1.39686 * 118.34435 * 359.97438 * 8 7 6 11 11 C 1.36068 * 125.10223 * 180.02562 * 2 1 3 12 12 C 1.47135 * 127.18431 * 0.02562 * 11 2 1 13 13 O 1.21647 * 120.00190 * 269.97356 * 12 11 2 14 14 N 1.34779 * 120.00161 * 89.97803 * 12 11 2 15 15 C 1.46502 * 119.99756 * 359.97438 * 14 12 11 16 16 C 1.46489 * 120.00190 * 179.97438 * 14 12 11 17 17 C 1.53001 * 109.47409 * 89.99728 * 16 14 12 18 18 H 1.09000 * 109.47216 * 295.00163 * 17 16 14 19 19 C 1.53003 * 109.47348 * 174.99851 * 17 16 14 20 20 N 1.46498 * 109.46985 * 54.99752 * 17 16 14 21 21 C 1.36938 * 120.00218 * 204.99802 * 20 17 16 22 22 H 1.08003 * 119.99740 * 0.02562 * 21 20 17 23 23 C 1.38805 * 120.00074 * 180.02562 * 21 20 17 24 24 N 1.31621 * 120.00254 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00130 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47086 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47133 * 120.00088 * 25 23 21 28 28 H 1.48500 * 109.47410 * 240.00020 * 25 23 21 29 29 H 1.09000 * 109.46830 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47171 * 119.97226 * 1 2 3 31 31 H 1.08996 * 109.47532 * 239.97476 * 1 2 3 32 32 H 1.07998 * 118.66304 * 180.02562 * 6 5 4 33 33 H 0.96706 * 113.99450 * 90.00466 * 9 8 7 34 34 H 1.09003 * 109.47253 * 90.00073 * 15 14 12 35 35 H 1.08996 * 109.47236 * 209.99977 * 15 14 12 36 36 H 1.09002 * 109.47236 * 330.00153 * 15 14 12 37 37 H 1.08999 * 109.47469 * 209.99659 * 16 14 12 38 38 H 1.09001 * 109.47462 * 329.99621 * 16 14 12 39 39 H 1.08999 * 109.47037 * 179.97438 * 19 17 16 40 40 H 1.09000 * 109.47217 * 300.00311 * 19 17 16 41 41 H 1.09004 * 109.47045 * 60.00082 * 19 17 16 42 42 H 0.97003 * 119.99948 * 25.01054 * 20 17 16 43 43 H 0.97005 * 120.00144 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2775 1.0960 0.0000 4 6 3.5836 0.7777 0.0006 5 7 4.7085 1.4878 0.0012 6 6 5.8810 0.8901 0.0022 7 7 6.0112 -0.4237 0.0012 8 6 4.9434 -1.2149 -0.0002 9 8 5.0783 -2.5629 -0.0017 10 6 3.6786 -0.6220 0.0000 11 6 2.2895 -1.1132 -0.0005 12 6 1.8418 -2.5148 -0.0016 13 8 1.6568 -3.0951 1.0514 14 7 1.6368 -3.1558 -1.1694 15 6 1.8591 -2.4568 -2.4375 16 6 1.1916 -4.5514 -1.1705 17 6 -0.3377 -4.5990 -1.1702 18 1 -0.7141 -4.1771 -0.2383 19 6 -0.8028 -6.0511 -1.2971 20 7 -0.8507 -3.8213 -2.3007 21 6 -2.1095 -3.2849 -2.2478 22 1 -2.7240 -3.4349 -1.3724 23 6 -2.5958 -2.5485 -3.3192 24 7 -1.8471 -2.3661 -4.3863 25 14 -4.3127 -1.8162 -3.2468 26 1 -4.9441 -2.1625 -1.9481 27 1 -4.2269 -0.3394 -3.3767 28 1 -5.1318 -2.3641 -4.3577 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3634 -0.5142 0.8897 32 1 6.7729 1.4992 0.0031 33 1 5.1170 -2.9553 0.8813 34 1 2.8933 -2.5957 -2.7526 35 1 1.1904 -2.8612 -3.1974 36 1 1.6590 -1.3934 -2.3062 37 1 1.5704 -5.0530 -2.0610 38 1 1.5709 -5.0546 -0.2811 39 1 -1.8923 -6.0850 -1.2964 40 1 -0.4264 -6.4731 -2.2290 41 1 -0.4211 -6.6298 -0.4559 42 1 -0.2987 -3.6864 -3.0869 43 1 -2.1870 -1.8517 -5.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571390770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:10 Heat of formation + Delta-G solvation = -13.564636 kcal Electronic energy + Delta-G solvation = -30011.235740 eV Core-core repulsion = 25866.079366 eV Total energy + Delta-G solvation = -4145.156373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.30906 -41.37351 -40.87128 -38.74415 -37.91038 -35.86472 -34.78116 -34.15397 -33.72331 -32.76270 -30.70494 -29.03710 -28.22435 -27.18095 -25.76587 -25.61885 -24.58991 -23.65199 -21.80163 -21.16998 -19.77149 -19.54079 -19.23522 -18.48926 -18.28719 -17.76046 -17.23833 -16.94375 -16.65778 -16.24015 -15.96073 -15.74181 -15.51996 -15.16724 -14.89178 -14.80554 -14.48610 -14.07284 -13.85975 -13.80915 -13.69860 -13.58018 -13.29982 -13.12246 -13.05677 -12.81070 -12.74692 -12.47563 -12.12883 -12.08370 -11.95715 -11.84199 -11.58608 -11.34646 -11.16897 -10.92341 -10.70303 -9.71714 -9.63361 -8.91228 -7.87873 -5.13156 -0.80741 -0.35782 0.58738 0.66681 1.30604 1.48085 1.52036 1.58677 1.97867 2.06505 2.38711 2.60002 2.71287 2.92368 3.17378 3.45835 3.48267 3.66356 3.89338 3.95095 4.07560 4.11247 4.21367 4.31156 4.40607 4.43696 4.50037 4.56167 4.69590 4.74692 4.84555 4.85926 4.91922 5.00008 5.15372 5.29390 5.35610 5.40681 5.54206 5.59546 5.64799 6.25915 6.26774 6.35834 6.71087 6.99033 7.42898 8.15434 8.42981 9.34833 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.004129 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.148463 B = 6778.865754 C = 7886.109278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.100 3.900 3 O -0.169 6.169 4 C 0.298 3.702 5 N -0.518 5.518 6 C 0.354 3.646 7 N -0.546 5.546 8 C 0.424 3.576 9 O -0.472 6.472 10 C -0.232 4.232 11 C -0.203 4.203 12 C 0.599 3.401 13 O -0.565 6.565 14 N -0.576 5.576 15 C 0.095 3.905 16 C 0.115 3.885 17 C 0.154 3.846 18 H 0.031 0.969 19 C -0.153 4.153 20 N -0.725 5.725 21 C -0.226 4.226 22 H 0.065 0.935 23 C -0.060 4.060 24 N -0.960 5.960 25 Si 0.953 3.047 26 H -0.273 1.273 27 H -0.293 1.293 28 H -0.301 1.301 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.265 0.735 33 H 0.429 0.571 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.377 0.623 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 3.254 9.030 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.064 6.064 4 C 0.115 3.885 5 N -0.244 5.244 6 C 0.068 3.932 7 N -0.273 5.273 8 C 0.232 3.768 9 O -0.283 6.283 10 C -0.240 4.240 11 C -0.209 4.209 12 C 0.387 3.613 13 O -0.446 6.446 14 N -0.305 5.305 15 C -0.048 4.048 16 C -0.008 4.008 17 C 0.044 3.956 18 H 0.049 0.951 19 C -0.214 4.214 20 N -0.368 5.368 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.253 4.253 24 N -0.612 5.612 25 Si 0.784 3.216 26 H -0.198 1.198 27 H -0.221 1.221 28 H -0.229 1.229 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.280 0.720 33 H 0.293 0.707 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.211 0.789 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.777 3.812 9.046 17.740 hybrid contribution -1.733 -0.185 -0.207 1.755 sum 13.044 3.627 8.839 16.169 Atomic orbital electron populations 1.20761 0.81273 1.06662 1.05386 1.23143 0.94480 0.81142 0.96181 1.83751 1.13437 1.34467 1.74739 1.19713 0.85063 0.87727 0.95951 1.67423 0.95570 1.41375 1.19985 1.25830 0.93549 0.86745 0.87027 1.68332 1.32567 1.07470 1.18958 1.18891 0.85116 0.85614 0.87174 1.84627 1.94796 1.12940 1.35966 1.21145 0.94477 0.95783 1.12571 1.20313 0.91349 0.94541 1.14730 1.17038 0.76472 0.84258 0.83574 1.90757 1.54091 1.67851 1.31865 1.47538 1.63957 1.13249 1.05773 1.21738 1.01060 0.96963 0.85063 1.21894 0.94263 0.80699 1.03924 1.20777 0.92263 0.91876 0.90647 0.95066 1.22222 1.00693 0.97099 1.01351 1.42591 1.15261 1.61756 1.17192 1.19456 0.92309 1.23961 1.00042 0.91702 1.25193 1.00854 1.02604 0.96637 1.69752 1.37684 1.46716 1.07002 0.85371 0.81438 0.77745 0.77010 1.19801 1.22055 1.22861 0.86975 0.88803 0.87645 0.71990 0.70670 0.91732 0.90505 0.92545 0.88851 0.88825 0.94349 0.92879 0.91375 0.78854 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.27 10.12 71.24 0.72 -1.55 16 2 C 0.10 2.95 6.96 25.18 0.18 3.12 16 3 O -0.17 -4.92 10.51 -0.57 -0.01 -4.93 16 4 C 0.30 8.44 8.62 85.01 0.73 9.18 16 5 N -0.52 -12.57 10.46 -313.24 -3.28 -15.85 16 6 C 0.35 6.49 12.23 180.87 2.21 8.70 16 7 N -0.55 -12.06 10.47 -312.56 -3.27 -15.34 16 8 C 0.42 10.71 7.88 84.88 0.67 11.38 16 9 O -0.47 -10.75 13.58 -87.71 -1.19 -11.94 16 10 C -0.23 -6.62 6.41 -20.03 -0.13 -6.75 16 11 C -0.20 -6.34 4.31 -19.05 -0.08 -6.42 16 12 C 0.60 20.42 7.27 86.58 0.63 21.05 16 13 O -0.57 -21.68 16.69 -4.18 -0.07 -21.75 16 14 N -0.58 -18.85 2.73 -851.00 -2.32 -21.17 16 15 C 0.09 3.05 9.88 127.77 1.26 4.31 16 16 C 0.11 3.60 5.05 86.38 0.44 4.03 16 17 C 0.15 5.72 3.20 44.99 0.14 5.86 16 18 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 19 C -0.15 -5.04 9.49 71.98 0.68 -4.35 16 20 N -0.73 -32.61 4.57 -322.94 -1.47 -34.09 16 21 C -0.23 -11.50 9.93 84.03 0.83 -10.66 16 22 H 0.07 3.32 7.83 -2.91 -0.02 3.29 16 23 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 24 N -0.96 -53.61 13.06 21.65 0.28 -53.33 16 25 Si 0.95 43.65 29.55 68.60 2.03 45.68 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 28 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 30 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.69 16 32 H 0.26 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.43 6.19 9.06 -74.05 -0.67 5.52 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.79 5.62 -2.39 -0.01 2.77 16 36 H 0.06 1.88 6.62 -2.39 -0.02 1.86 16 37 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 38 H 0.09 2.76 7.42 -2.39 -0.02 2.74 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.38 17.70 5.33 -92.71 -0.49 17.21 16 43 H 0.25 13.70 8.31 -92.70 -0.77 12.92 16 Total: -1.00 -67.47 371.17 -0.63 -68.10 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.08 Total: 29.41 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 8.76 Total: 35.20 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -10.06 Total: -139.77 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.27 Total: -38.61 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.47 -0.63 -68.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571390770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.533 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds