Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46496 * 114.34784 * 272.36633 * 15 14 13 17 17 C 1.34775 * 120.00454 * 248.92569 * 16 15 14 18 18 O 1.21619 * 119.99585 * 359.97438 * 17 16 15 19 19 C 1.47421 * 120.00421 * 179.97438 * 17 16 15 20 20 C 1.36092 * 126.44695 * 179.68969 * 19 17 16 21 21 O 1.34255 * 106.94643 * 179.84052 * 20 19 17 22 22 C 1.34055 * 108.22994 * 0.42193 * 21 20 19 23 23 C 1.50695 * 125.38301 * 179.69661 * 22 21 20 24 24 C 1.53002 * 117.49715 * 8.79070 * 23 22 21 25 25 C 1.52997 * 117.49959 * 300.13172 * 23 22 21 26 26 N 1.29935 * 109.23953 * 359.73093 * 22 21 20 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09001 * 114.17484 * 139.66861 * 15 14 13 35 35 H 0.96999 * 120.00355 * 68.91972 * 16 15 14 36 36 H 1.07998 * 126.52603 * 359.97438 * 20 19 17 37 37 H 1.08997 * 115.55142 * 154.45444 * 23 22 21 38 38 H 1.09002 * 117.50028 * 359.97438 * 24 23 22 39 39 H 1.09001 * 117.50185 * 145.01863 * 24 23 22 40 40 H 1.09004 * 117.49591 * 214.98043 * 25 23 22 41 41 H 1.09005 * 117.49810 * 359.97293 * 25 23 22 42 42 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 43 43 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 3.6880 -8.3884 -0.3500 17 6 4.3324 -9.3645 -1.0197 18 8 3.8505 -9.8236 -2.0376 19 6 5.6211 -9.8755 -0.5185 20 6 6.3768 -10.8562 -1.0836 21 8 7.4649 -11.0057 -0.3114 22 6 7.3756 -10.1429 0.7106 23 6 8.3896 -9.9903 1.8149 24 6 9.7159 -10.7382 1.6643 25 6 8.6785 -11.2164 2.6832 26 7 6.2762 -9.4594 0.5992 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 1.8936 -8.5804 -1.5068 35 1 4.0722 -8.0224 0.4620 36 1 6.1462 -11.4076 -1.9831 37 1 8.4146 -9.0138 2.2985 38 1 9.8548 -11.3409 0.7668 39 1 10.6133 -10.2539 2.0494 40 1 8.8937 -11.0465 3.7382 41 1 8.1346 -12.1334 2.4561 42 1 1.6894 -7.6711 1.2299 43 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713841833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = -3.989804 kcal Electronic energy + Delta-G solvation = -27248.313913 eV Core-core repulsion = 23103.572735 eV Total energy + Delta-G solvation = -4144.741177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.56263 -41.75270 -40.26527 -39.43286 -38.12867 -36.05057 -35.95939 -34.95507 -33.28447 -31.62612 -30.95780 -27.51117 -26.97486 -25.92104 -25.29246 -24.65618 -23.32119 -22.44456 -21.36873 -21.07296 -20.71650 -19.91816 -19.21046 -18.04149 -17.85525 -17.73764 -17.28551 -16.86820 -16.62402 -16.53624 -16.43429 -15.88213 -15.76873 -15.50650 -15.26106 -14.86865 -14.74607 -14.43138 -13.75585 -13.68883 -13.49393 -13.40827 -13.00759 -12.72885 -12.61768 -12.47196 -12.44745 -12.34666 -12.12164 -11.96747 -11.86766 -11.80995 -11.59233 -11.50420 -11.40513 -10.40252 -10.25890 -10.01555 -9.93273 -9.73453 -8.47168 -5.95824 -0.02693 0.79538 1.38502 1.39828 1.43747 1.50969 1.90557 2.06181 2.09210 2.28049 2.60992 2.82976 2.90086 3.18734 3.31083 3.47772 3.57406 3.67680 3.74962 3.78986 3.95895 4.13853 4.14567 4.28577 4.38907 4.39976 4.44614 4.52665 4.58512 4.61351 4.72149 4.75277 4.77612 4.85415 4.99422 5.06298 5.19692 5.31913 5.37080 5.39821 5.85198 6.05727 6.22794 6.50811 6.60816 6.96309 7.12855 7.56651 8.13859 8.69996 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002093 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.937734 B =13372.965477 C =14694.365158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.021 3.979 13 N -0.474 5.474 14 C -0.012 4.012 15 C 0.123 3.877 16 N -0.682 5.682 17 C 0.606 3.394 18 O -0.563 6.563 19 C -0.103 4.103 20 C 0.032 3.968 21 O -0.192 6.192 22 C 0.231 3.769 23 C -0.100 4.100 24 C -0.149 4.149 25 C -0.145 4.145 26 N -0.484 5.484 27 C 0.002 3.998 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.262 0.738 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 -26.022 2.718 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.110 4.110 13 N -0.197 5.197 14 C -0.143 4.143 15 C 0.017 3.983 16 N -0.330 5.330 17 C 0.393 3.607 18 O -0.443 6.443 19 C -0.222 4.222 20 C -0.042 4.042 21 O -0.078 6.078 22 C 0.023 3.977 23 C -0.119 4.119 24 C -0.186 4.186 25 C -0.183 4.183 26 N -0.213 5.213 27 C -0.127 4.127 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.252 0.748 36 H 0.278 0.722 37 H 0.169 0.831 38 H 0.121 0.879 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.186 -25.440 2.876 27.939 hybrid contribution -0.643 0.924 -0.786 1.373 sum 10.543 -24.517 2.090 26.769 Atomic orbital electron populations 1.69660 1.06714 1.29330 1.50342 1.26025 0.96600 1.02330 0.96348 0.85005 0.77796 0.76748 0.78880 1.19856 1.19258 1.19769 1.19583 0.92556 0.84170 1.50054 0.90725 1.41933 1.09280 1.04650 1.65467 1.20875 0.88272 0.86059 0.82046 1.90495 1.16098 1.87971 1.56162 1.22404 0.94315 0.89796 1.04495 1.68800 1.31848 1.01478 1.17561 1.24434 1.02552 0.94962 0.92328 1.22016 0.84676 0.94229 0.97372 1.45373 1.21960 1.36861 1.28848 1.16898 0.82249 0.78998 0.82590 1.90788 1.67671 1.60753 1.25092 1.21742 1.00027 1.03124 0.97296 1.25835 0.83484 0.97890 0.97002 1.84382 1.40045 1.51696 1.31717 1.25740 0.94785 0.87166 0.90055 1.20547 0.94781 1.01352 0.95235 1.23257 0.92029 1.01458 1.01855 1.23272 1.01300 0.95223 0.98508 1.70717 1.06355 1.26322 1.17938 1.24344 0.98877 0.88719 1.00726 0.91281 0.76941 0.86877 0.89403 0.88532 0.92557 0.85635 0.74832 0.72202 0.83075 0.87903 0.85175 0.85144 0.88343 0.88182 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 8 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.58 -30.21 5.29 -306.98 -1.62 -31.84 16 10 C 0.44 21.68 7.85 87.66 0.69 22.37 16 11 O -0.62 -36.36 16.01 -3.08 -0.05 -36.41 16 12 C 0.02 0.74 5.30 85.56 0.45 1.19 16 13 N -0.47 -15.36 5.82 -932.63 -5.43 -20.79 16 14 C -0.01 -0.37 7.53 83.57 0.63 0.25 16 15 C 0.12 3.01 4.59 45.44 0.21 3.22 16 16 N -0.68 -18.38 5.39 -444.97 -2.40 -20.77 16 17 C 0.61 16.91 7.81 86.66 0.68 17.59 16 18 O -0.56 -17.42 16.48 -4.09 -0.07 -17.49 16 19 C -0.10 -2.58 6.99 40.41 0.28 -2.29 16 20 C 0.03 0.59 11.95 67.32 0.80 1.40 16 21 O -0.19 -3.50 10.40 0.35 0.00 -3.49 16 22 C 0.23 4.66 7.80 88.39 0.69 5.35 16 23 C -0.10 -1.32 6.33 -11.54 -0.07 -1.39 16 24 C -0.15 -1.15 10.16 30.62 0.31 -0.84 16 25 C -0.15 -1.16 10.24 30.62 0.31 -0.85 16 26 N -0.48 -12.37 11.06 -293.03 -3.24 -15.61 16 27 C 0.00 0.05 7.45 83.57 0.62 0.67 16 28 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 30 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 31 H 0.09 2.54 7.30 -2.39 -0.02 2.52 16 32 H 0.10 2.50 7.42 -2.39 -0.02 2.49 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.13 2.79 7.45 -2.39 -0.02 2.77 16 35 H 0.42 11.69 8.49 -92.71 -0.79 10.90 16 36 H 0.26 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 0.84 7.94 -2.39 -0.02 0.83 16 39 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.12 1.83 7.91 -2.39 -0.02 1.81 16 Total: -1.00 -79.32 378.40 -4.05 -83.37 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.44 Total: 39.34 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 6.89 Total: 27.74 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -12.41 Total: -138.90 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.11 Total: -57.39 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.32 -4.05 -83.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713841833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.380 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds