Wall clock time and date at job start Tue Mar 31 2020 18:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35028 * 126.38766 * 2 1 4 4 H 0.97003 * 124.88575 * 0.02562 * 3 2 1 5 5 N 1.28469 * 110.23274 * 179.72277 * 3 2 1 6 6 C 1.31811 * 110.07011 * 0.45282 * 5 3 2 7 7 C 1.47710 * 126.51885 * 179.81633 * 6 5 3 8 8 O 1.21573 * 120.00016 * 179.69204 * 7 6 5 9 9 N 1.34777 * 119.99649 * 359.96784 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72300 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46846 * 54.99553 * 12 11 10 14 14 C 1.53000 * 109.47324 * 174.99515 * 12 11 10 15 15 N 1.46502 * 109.47023 * 294.99620 * 12 11 10 16 16 C 1.36938 * 119.99922 * 155.00081 * 15 12 11 17 17 H 1.07999 * 119.99853 * 359.97438 * 16 15 12 18 18 C 1.38810 * 119.99787 * 180.02562 * 16 15 12 19 19 N 1.31618 * 119.99910 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47464 * 89.99592 * 20 18 16 22 22 H 1.48506 * 109.47408 * 209.99990 * 20 18 16 23 23 H 1.48507 * 109.47057 * 329.99760 * 20 18 16 24 24 C 1.35365 * 126.38257 * 179.97438 * 2 1 3 25 25 C 1.50702 * 127.25030 * 0.02562 * 24 2 1 26 26 F 1.39901 * 109.47059 * 209.97075 * 25 24 2 27 27 F 1.39904 * 109.46921 * 329.97052 * 25 24 2 28 28 F 1.39903 * 109.47237 * 89.96671 * 25 24 2 29 29 H 1.08997 * 109.47296 * 270.00257 * 1 2 3 30 30 H 1.09006 * 109.46489 * 30.00027 * 1 2 3 31 31 H 1.08999 * 109.46978 * 149.99777 * 1 2 3 32 32 H 0.97000 * 120.00483 * 359.72732 * 9 7 6 33 33 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 34 34 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 35 35 H 1.09009 * 109.46616 * 300.00010 * 11 10 9 36 36 H 1.08993 * 109.47533 * 59.99611 * 11 10 9 37 37 H 1.09004 * 109.46871 * 300.00122 * 14 12 11 38 38 H 1.09001 * 109.46699 * 59.99888 * 14 12 11 39 39 H 1.08995 * 109.46899 * 179.97438 * 14 12 11 40 40 H 0.97003 * 119.99694 * 335.00050 * 15 12 11 41 41 H 0.97005 * 119.99786 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 0.0004 5 7 3.5420 0.7296 0.0058 6 6 3.6321 -0.5854 0.0002 7 6 4.8764 -1.3813 0.0002 8 8 4.8212 -2.5958 0.0002 9 7 6.0730 -0.7611 0.0058 10 6 7.3072 -1.5504 0.0120 11 6 8.5140 -0.6100 0.0182 12 6 9.8029 -1.4344 0.0239 13 1 9.7954 -2.1263 -0.8182 14 6 11.0074 -0.4985 -0.0957 15 7 9.8939 -2.1897 1.2759 16 6 10.6294 -3.3436 1.3275 17 1 11.1422 -3.6970 0.4451 18 6 10.7151 -4.0596 2.5136 19 7 10.0898 -3.6291 3.5888 20 14 11.7179 -5.6340 2.5838 21 1 13.1167 -5.3134 2.9658 22 1 11.1279 -6.5524 3.5907 23 1 11.7065 -6.2880 1.2505 24 6 2.3100 -1.0898 0.0005 25 6 1.8853 -2.5357 0.0006 26 9 2.8500 -3.3050 0.6600 27 9 0.6580 -2.6612 0.6603 28 9 1.7536 -2.9832 -1.3184 29 1 -0.3634 0.0000 1.0276 30 1 -0.3632 0.8901 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 6.1170 0.2080 0.0058 33 1 7.3320 -2.1788 0.9023 34 1 7.3407 -2.1793 -0.8776 35 1 8.4892 0.0187 -0.8720 36 1 8.4803 0.0185 0.9079 37 1 10.9397 0.0635 -1.0272 38 1 11.0149 0.1935 0.7465 39 1 11.9256 -1.0858 -0.0911 40 1 9.4330 -1.8725 2.0683 41 1 10.1500 -4.1293 4.4177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714490011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:06 Heat of formation + Delta-G solvation = -134.705926 kcal Electronic energy + Delta-G solvation = -29052.306866 eV Core-core repulsion = 24360.040672 eV Total energy + Delta-G solvation = -4692.266194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.04017 -48.59850 -48.47881 -44.10960 -40.56631 -38.13225 -35.91270 -34.35880 -34.07030 -33.63533 -31.08124 -29.76269 -28.79613 -26.65142 -26.06892 -25.44090 -23.50273 -22.22815 -21.79523 -20.96904 -19.68618 -19.43829 -19.26347 -18.85763 -18.12657 -17.80188 -17.26453 -16.98231 -16.76424 -16.23956 -15.59523 -15.50274 -15.44500 -15.32320 -15.21232 -14.94764 -14.72703 -14.62137 -14.47409 -14.30202 -14.12031 -13.84675 -13.74478 -13.53786 -13.22834 -13.01956 -12.80643 -12.62550 -12.29759 -12.28947 -12.18378 -12.10898 -11.67564 -11.58790 -11.24236 -10.91944 -10.89854 -10.42078 -10.12238 -8.95899 -7.90663 -5.17340 0.18116 0.46059 1.42142 1.46741 1.48889 1.56660 1.81062 2.06193 2.12509 2.58722 2.70278 3.00895 3.27231 3.43612 3.45544 3.56933 3.78877 3.92765 4.00178 4.14755 4.25025 4.38092 4.49269 4.65835 4.68700 4.75165 4.77813 4.89986 5.03337 5.07986 5.11186 5.21448 5.37521 5.41448 5.56128 5.63497 5.79197 6.31932 6.32320 6.57314 7.08688 7.38271 8.16328 8.37535 9.32991 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002782 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.612100 B =10063.286547 C =11225.827985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.117 3.883 3 N -0.347 5.347 4 H 0.475 0.525 5 N -0.241 5.241 6 C 0.021 3.979 7 C 0.579 3.421 8 O -0.552 6.552 9 N -0.696 5.696 10 C 0.133 3.867 11 C -0.116 4.116 12 C 0.165 3.835 13 H 0.044 0.956 14 C -0.153 4.153 15 N -0.736 5.736 16 C -0.231 4.231 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.271 1.271 24 C -0.294 4.294 25 C 0.541 3.459 26 F -0.172 7.172 27 F -0.171 7.171 28 F -0.183 7.183 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.372 0.628 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 16.931 -10.992 31.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 N -0.064 5.064 4 H 0.327 0.673 5 N -0.075 5.075 6 C -0.142 4.142 7 C 0.363 3.637 8 O -0.428 6.428 9 N -0.348 5.348 10 C 0.009 3.991 11 C -0.154 4.154 12 C 0.056 3.944 13 H 0.062 0.938 14 C -0.213 4.213 15 N -0.376 5.376 16 C -0.363 4.363 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.196 1.196 24 C -0.306 4.306 25 C 0.485 3.515 26 F -0.154 7.154 27 F -0.153 7.153 28 F -0.165 7.165 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.203 0.797 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.035 16.856 -11.076 30.618 hybrid contribution 0.107 -1.291 0.806 1.526 sum -22.928 15.565 -10.270 29.554 Atomic orbital electron populations 1.20892 0.81953 1.06673 1.06197 1.21616 0.97143 0.84741 0.97783 1.43376 1.01603 1.10667 1.50799 0.67312 1.73593 1.03024 1.12378 1.18551 1.21486 0.93282 0.90486 1.08900 1.17287 0.82860 0.86494 0.77084 1.90915 1.86961 1.14319 1.50585 1.45718 1.04537 1.11259 1.73303 1.21221 0.82485 0.94189 1.01182 1.21921 0.91978 0.97521 1.03974 1.20453 0.93174 0.92250 0.88512 0.93771 1.22259 0.98574 0.99205 1.01237 1.42666 1.59636 1.26172 1.09154 1.19599 1.21562 0.99707 0.95475 0.90761 1.25491 1.02974 1.02621 0.96021 1.69813 1.49343 1.41859 1.01146 0.85232 0.78126 0.79847 0.77172 1.21336 1.22682 1.19617 1.20078 0.94316 0.93338 1.22868 1.17235 0.74491 0.86058 0.73696 1.93327 1.63365 1.77682 1.80994 1.93169 1.44351 1.96689 1.81072 1.93181 1.95701 1.90902 1.36706 0.87220 0.86073 0.89287 0.74525 0.94040 0.92354 0.87618 0.90999 0.90553 0.93655 0.94776 0.79657 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 9.46 71.24 0.67 0.28 16 2 C 0.12 1.50 7.19 41.40 0.30 1.80 16 3 N -0.35 -3.51 6.83 -47.93 -0.33 -3.83 16 4 H 0.48 0.01 8.96 -219.99 -1.97 -1.96 16 5 N -0.24 -4.54 11.92 -48.18 -0.57 -5.12 16 6 C 0.02 0.55 7.10 42.46 0.30 0.85 16 7 C 0.58 19.74 7.79 86.75 0.68 20.42 16 8 O -0.55 -23.73 13.48 -3.95 -0.05 -23.79 16 9 N -0.70 -20.60 5.55 -466.09 -2.59 -23.19 16 10 C 0.13 4.64 5.56 86.38 0.48 5.12 16 11 C -0.12 -3.43 4.87 30.59 0.15 -3.28 16 12 C 0.16 6.23 2.89 44.99 0.13 6.36 16 13 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 14 C -0.15 -5.07 9.49 71.98 0.68 -4.39 16 15 N -0.74 -37.09 4.57 -322.94 -1.48 -38.57 16 16 C -0.23 -13.09 9.93 84.03 0.83 -12.26 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 20 Si 0.97 48.14 29.55 68.60 2.03 50.17 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 24 C -0.29 -6.95 5.68 -19.72 -0.11 -7.06 16 25 C 0.54 14.95 3.27 71.24 0.23 15.18 16 26 F -0.17 -6.33 13.79 44.97 0.62 -5.71 16 27 F -0.17 -3.83 15.41 44.97 0.69 -3.13 16 28 F -0.18 -5.20 17.30 44.97 0.78 -4.42 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.12 -0.39 8.14 -2.38 -0.02 -0.41 16 31 H 0.09 0.55 7.23 -2.39 -0.02 0.53 16 32 H 0.42 9.52 8.20 -92.71 -0.76 8.76 16 33 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.37 20.30 7.80 -92.71 -0.72 19.57 16 41 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -81.73 360.82 1.86 -79.87 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -2.34 Total: 20.16 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 4.81 Total: 18.79 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -4.68 Total: -131.94 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 9 Polarization: -15.36 SS G_CDS: 2.09 Total: -13.26 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -81.73 1.86 -79.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714490011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.833 kcal (2) G-P(sol) polarization free energy of solvation -81.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds