Wall clock time and date at job start Tue Mar 31 2020 18:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34263 * 126.29224 * 2 1 4 4 H 0.96997 * 125.75221 * 359.95860 * 3 2 1 5 5 N 1.39936 * 108.49451 * 180.23757 * 3 2 1 6 6 C 1.30453 * 108.89519 * 359.75514 * 5 3 2 7 7 C 1.50697 * 125.98819 * 180.02562 * 6 5 3 8 8 F 1.39903 * 109.46755 * 269.99453 * 7 6 5 9 9 F 1.39903 * 109.47217 * 29.99039 * 7 6 5 10 10 F 1.39898 * 109.47135 * 149.99876 * 7 6 5 11 11 C 1.38042 * 126.29367 * 179.81263 * 2 1 3 12 12 C 1.47432 * 126.41530 * 0.03010 * 11 2 1 13 13 O 1.21597 * 120.00199 * 269.70935 * 12 11 2 14 14 N 1.34773 * 119.99850 * 89.70713 * 12 11 2 15 15 C 1.46507 * 120.00082 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.46702 * 324.99936 * 15 14 12 17 17 C 1.52996 * 109.47074 * 84.99956 * 15 14 12 18 18 C 1.52997 * 109.47235 * 204.99815 * 15 14 12 19 19 H 1.09001 * 109.46922 * 299.99993 * 18 15 14 20 20 C 1.53006 * 109.47164 * 59.99744 * 18 15 14 21 21 N 1.46496 * 109.47194 * 179.97438 * 18 15 14 22 22 C 1.36940 * 120.00276 * 154.99852 * 21 18 15 23 23 H 1.08002 * 119.99359 * 0.02562 * 22 21 18 24 24 C 1.38803 * 120.00232 * 180.02562 * 22 21 18 25 25 N 1.31621 * 120.00221 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00226 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47360 * 89.99777 * 26 24 22 28 28 H 1.48498 * 109.47518 * 209.99876 * 26 24 22 29 29 H 1.48507 * 109.46892 * 329.99954 * 26 24 22 30 30 H 1.09000 * 109.47409 * 270.17726 * 1 2 3 31 31 H 1.08997 * 109.47008 * 30.18449 * 1 2 3 32 32 H 1.09001 * 109.47104 * 150.18095 * 1 2 3 33 33 H 0.97000 * 120.00408 * 359.97438 * 14 12 11 34 34 H 1.09004 * 109.47368 * 180.02562 * 17 15 14 35 35 H 1.09004 * 109.47108 * 300.00135 * 17 15 14 36 36 H 1.09001 * 109.47367 * 59.99833 * 17 15 14 37 37 H 1.09001 * 109.47002 * 59.99738 * 20 18 15 38 38 H 1.08993 * 109.46955 * 180.02562 * 20 18 15 39 39 H 1.09000 * 109.47050 * 300.00004 * 20 18 15 40 40 H 0.97003 * 119.99825 * 335.00349 * 21 18 15 41 41 H 0.97001 * 120.00480 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3016 1.0822 0.0000 4 1 2.0026 2.0049 -0.0006 5 7 3.6340 0.6545 -0.0055 6 6 3.6590 -0.6498 -0.0035 7 6 4.8951 -1.5118 -0.0073 8 9 5.2719 -1.7808 -1.3275 9 9 5.9339 -0.8405 0.6466 10 9 4.6270 -2.7144 0.6553 11 6 2.3240 -1.1126 0.0036 12 6 1.8858 -2.5203 0.0076 13 8 1.7098 -3.0993 1.0623 14 7 1.6804 -3.1654 -1.1577 15 6 1.2444 -4.5640 -1.1538 16 1 1.7026 -5.0850 -0.3132 17 6 -0.2787 -4.6231 -1.0216 18 6 1.6690 -5.2343 -2.4620 19 1 1.2108 -4.7132 -3.3026 20 6 3.1922 -5.1752 -2.5944 21 7 1.2336 -6.6330 -2.4578 22 6 1.0247 -7.2887 -3.6418 23 1 1.1814 -6.7746 -4.5786 24 6 0.6116 -8.6138 -3.6378 25 7 0.4114 -9.2442 -4.7758 26 14 0.3399 -9.5027 -2.0175 27 1 -1.0688 -9.3215 -1.5836 28 1 0.6213 -10.9501 -2.1935 29 1 1.2511 -8.9429 -0.9870 30 1 -0.3634 0.0032 1.0276 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3633 -0.8916 -0.5110 33 1 1.8204 -2.7034 -1.9991 34 1 -0.6031 -5.6637 -1.0182 35 1 -0.5813 -4.1455 -0.0896 36 1 -0.7369 -4.1020 -1.8622 37 1 3.6504 -5.6962 -1.7537 38 1 3.4946 -5.6523 -3.5265 39 1 3.5165 -4.1346 -2.5973 40 1 1.0931 -7.0947 -1.6164 41 1 0.1223 -10.1701 -4.7730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717418474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:30 Heat of formation + Delta-G solvation = -100.872578 kcal Electronic energy + Delta-G solvation = -30103.083202 eV Core-core repulsion = 25412.284132 eV Total energy + Delta-G solvation = -4690.799070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.35351 -47.87696 -47.84532 -42.14508 -39.49490 -36.84630 -34.03844 -33.78980 -32.40364 -31.59574 -29.77857 -28.87239 -27.96738 -27.06859 -24.00468 -23.62260 -21.93844 -21.74801 -20.30217 -19.96157 -18.81913 -18.73102 -18.02455 -17.78589 -17.60074 -16.78207 -16.03739 -15.56581 -14.89806 -14.69089 -14.57261 -14.48458 -14.25449 -14.21087 -13.96822 -13.95103 -13.87697 -13.73051 -13.45132 -13.32430 -13.17743 -12.92821 -12.55750 -12.48776 -12.12840 -11.89020 -11.66865 -11.36487 -11.10141 -10.89991 -10.76926 -10.54162 -10.30967 -10.03750 -9.94379 -9.59390 -9.28154 -9.07637 -8.85434 -7.30124 -5.78135 -3.14487 0.92607 1.46077 1.62509 2.42034 2.50546 3.17091 3.37881 3.39468 3.43127 3.47363 3.62396 4.07628 4.09477 4.40920 4.57082 4.59134 4.77417 4.91914 5.13285 5.19004 5.27225 5.39509 5.41721 5.45121 5.63674 5.70081 6.01310 6.06209 6.25532 6.30299 6.39157 6.42115 6.49906 6.65031 6.65614 6.80192 6.97202 7.54344 7.96304 8.21554 8.40274 9.17992 9.90567 10.09494 11.39920 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003417 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.419487 B = 8192.130359 C = 8965.744686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.141 3.859 3 N -0.441 5.441 4 H 0.450 0.550 5 N -0.233 5.233 6 C 0.025 3.975 7 C 0.551 3.449 8 F -0.162 7.162 9 F -0.166 7.166 10 F -0.153 7.153 11 C -0.240 4.240 12 C 0.589 3.411 13 O -0.521 6.521 14 N -0.705 5.705 15 C 0.131 3.869 16 H 0.087 0.913 17 C -0.154 4.154 18 C 0.174 3.826 19 H 0.060 0.940 20 C -0.166 4.166 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.880 3.120 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.275 1.275 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 24.621 9.925 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.010 3.990 3 N -0.151 5.151 4 H 0.297 0.703 5 N -0.057 5.057 6 C -0.144 4.144 7 C 0.494 3.506 8 F -0.144 7.144 9 F -0.147 7.147 10 F -0.134 7.134 11 C -0.255 4.255 12 C 0.371 3.629 13 O -0.396 6.396 14 N -0.356 5.356 15 C 0.027 3.973 16 H 0.105 0.895 17 C -0.212 4.212 18 C 0.064 3.936 19 H 0.078 0.922 20 C -0.226 4.226 21 N -0.386 5.386 22 C -0.372 4.372 23 H 0.109 0.891 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.201 1.201 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.196 0.804 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.915 25.113 10.430 27.349 hybrid contribution -0.423 -0.779 0.656 1.103 sum 2.493 24.334 11.086 26.856 Atomic orbital electron populations 1.20669 0.85138 1.05252 1.04881 1.21504 0.95079 0.85713 0.96737 1.46042 1.03130 1.09039 1.56862 0.70291 1.77104 0.96935 1.10408 1.21254 1.22040 0.93356 0.92754 1.06227 1.16879 0.80897 0.78099 0.74676 1.93279 1.91874 1.94044 1.35156 1.93242 1.60133 1.80138 1.81218 1.93329 1.93606 1.45915 1.80574 1.19810 0.90804 0.95043 1.19880 1.17083 0.77414 0.84001 0.84378 1.90816 1.50586 1.67179 1.31027 1.46036 1.68021 1.13611 1.07918 1.21428 0.95217 0.80067 1.00626 0.89510 1.22069 0.94849 1.03364 1.00928 1.20355 0.93036 0.86537 0.93659 0.92205 1.22422 0.98441 0.99415 1.02294 1.42653 1.82455 1.07870 1.05583 1.19013 1.38300 0.94279 0.85591 0.89137 1.24634 1.01401 0.96622 0.96203 1.69694 1.52888 1.11477 1.24024 0.86612 0.78195 0.79560 0.84583 1.20990 1.21746 1.20134 0.88672 0.89728 0.88441 0.76538 0.90638 0.93136 0.92500 0.93399 0.92114 0.94208 0.80448 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.25 36.00 0.37 -0.10 16 2 C 0.14 1.10 7.29 -81.60 -0.60 0.51 16 3 N -0.44 -2.99 7.29 33.86 0.25 -2.75 16 4 H 0.45 1.20 8.96 -182.72 -1.64 -0.43 16 5 N -0.23 -2.46 12.57 33.90 0.43 -2.03 16 6 C 0.02 0.29 6.60 -82.02 -0.54 -0.25 16 7 C 0.55 7.03 3.51 36.00 0.13 7.15 16 8 F -0.16 -2.04 17.30 2.25 0.04 -2.00 16 9 F -0.17 -2.07 17.25 2.25 0.04 -2.03 16 10 F -0.15 -2.22 15.90 2.25 0.04 -2.19 16 11 C -0.24 -2.75 5.84 -105.06 -0.61 -3.37 16 12 C 0.59 8.12 5.88 -12.52 -0.07 8.05 16 13 O -0.52 -9.08 16.76 5.28 0.09 -8.99 16 14 N -0.71 -9.06 4.38 -54.88 -0.24 -9.30 16 15 C 0.13 2.05 2.21 -67.93 -0.15 1.90 16 16 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 17 C -0.15 -2.30 9.33 37.16 0.35 -1.96 16 18 C 0.17 3.13 2.52 -67.93 -0.17 2.95 16 19 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 20 C -0.17 -2.86 9.33 37.16 0.35 -2.51 16 21 N -0.74 -16.70 4.23 -53.43 -0.23 -16.93 16 22 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 23 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 26 Si 0.88 21.80 27.74 -169.99 -4.71 17.08 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.54 7.96 -51.93 -0.41 0.12 16 33 H 0.40 4.30 8.37 -40.82 -0.34 3.96 16 34 H 0.07 1.27 7.45 -51.93 -0.39 0.88 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 40 H 0.36 8.19 5.45 -40.82 -0.22 7.97 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -34.39 363.30 -5.60 -39.99 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.33 Total: 5.88 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.21 Total: 5.78 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.98 Total: -59.00 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.39 -5.60 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717418474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.886 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds