Wall clock time and date at job start Tue Mar 31 2020 18:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35311 * 126.66627 * 2 1 4 4 C 1.42271 * 103.92181 * 180.15416 * 3 2 1 5 5 C 1.48337 * 126.93733 * 179.88801 * 4 3 2 6 6 O 1.21490 * 120.00077 * 359.70904 * 5 4 3 7 7 N 1.34780 * 119.99620 * 179.71174 * 5 4 3 8 8 C 1.47860 * 126.92922 * 359.97152 * 7 5 4 9 9 C 1.56020 * 105.10964 * 181.95803 * 8 7 5 10 10 H 1.09002 * 116.90586 * 159.22542 * 9 8 7 11 11 C 1.57081 * 99.60110 * 32.80843 * 9 8 7 12 12 C 1.49280 * 126.92034 * 180.02562 * 7 5 4 13 13 H 1.09002 * 116.76170 * 16.44479 * 12 7 5 14 14 C 1.56014 * 104.12771 * 246.86683 * 12 7 5 15 15 N 1.48288 * 105.06961 * 288.80054 * 14 12 7 16 16 C 1.46894 * 111.00055 * 122.54342 * 15 14 12 17 17 C 1.50697 * 109.47174 * 76.51198 * 16 15 14 18 18 O 1.21291 * 120.00220 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00273 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00339 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99715 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00085 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00415 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00017 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47304 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47015 * 119.99937 * 24 22 20 27 27 H 1.48494 * 109.47644 * 240.00096 * 24 22 20 28 28 N 1.30977 * 106.12587 * 359.62749 * 4 3 2 29 29 O 1.20908 * 111.44078 * 0.24121 * 28 4 3 30 30 H 1.09011 * 109.47081 * 180.28472 * 1 2 3 31 31 H 1.08998 * 109.46906 * 300.27810 * 1 2 3 32 32 H 1.08991 * 109.47631 * 60.28316 * 1 2 3 33 33 H 1.08004 * 128.04120 * 0.02562 * 3 2 1 34 34 H 1.08998 * 110.30773 * 63.05157 * 8 7 5 35 35 H 1.08989 * 110.31495 * 300.86898 * 8 7 5 36 36 H 1.09003 * 112.35747 * 191.74800 * 11 9 8 37 37 H 1.08999 * 112.35874 * 64.33407 * 11 9 8 38 38 H 1.08993 * 110.32212 * 47.69888 * 14 12 7 39 39 H 1.09002 * 110.31879 * 169.90199 * 14 12 7 40 40 H 1.09004 * 109.47466 * 196.51643 * 16 15 14 41 41 H 1.09006 * 109.47317 * 316.51448 * 16 15 14 42 42 H 0.97005 * 119.99377 * 0.02562 * 19 17 16 43 43 H 0.97001 * 120.00502 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6270 0.5353 -0.0037 5 6 4.9075 1.2841 -0.0076 6 8 4.9008 2.4990 -0.0132 7 7 6.0785 0.6167 -0.0050 8 6 6.2649 -0.8501 0.0022 9 6 7.8096 -1.0635 0.0537 10 1 8.1622 -2.0310 0.4111 11 6 8.2190 0.1908 0.9062 12 6 7.4485 1.2094 -0.0077 13 1 7.5284 2.2621 0.2635 14 6 8.0338 0.8093 -1.3974 15 7 8.2803 -0.6501 -1.3063 16 6 7.5530 -1.3735 -2.3577 17 6 8.2695 -1.2032 -3.6724 18 8 9.2864 -0.5444 -3.7280 19 7 7.7810 -1.7838 -4.7863 20 6 8.4332 -1.6293 -5.9823 21 1 9.3387 -1.0426 -6.0317 22 6 7.9292 -2.2274 -7.1307 23 7 6.8273 -2.9408 -7.0707 24 14 8.8175 -2.0162 -8.7604 25 1 10.0239 -1.1735 -8.5612 26 1 9.2241 -3.3472 -9.2786 27 1 7.9110 -1.3607 -9.7370 28 7 3.4761 -0.7657 0.0027 29 8 2.3073 -1.0750 0.0048 30 1 -0.3634 -1.0278 0.0051 31 1 -0.3633 0.5181 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 2.0301 2.1272 0.0004 34 1 5.8525 -1.2883 -0.9066 35 1 5.7929 -1.2872 0.8820 36 1 9.2955 0.3617 0.9017 37 1 7.8152 0.1542 1.9180 38 1 7.3137 1.0230 -2.1872 39 1 8.9678 1.3402 -1.5818 40 1 7.5058 -2.4326 -2.1041 41 1 6.5420 -0.9745 -2.4405 42 1 6.9680 -2.3110 -4.7417 43 1 6.4753 -3.3580 -7.8725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753416363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:26 Heat of formation + Delta-G solvation = 47.378594 kcal Electronic energy + Delta-G solvation = -29131.159473 eV Core-core repulsion = 24988.645796 eV Total energy + Delta-G solvation = -4142.513677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.31685 -41.29548 -38.81545 -37.81985 -34.43984 -34.27843 -33.82419 -33.30897 -31.35260 -30.86655 -29.85699 -28.17289 -26.63754 -25.77501 -24.56213 -23.91702 -22.84063 -21.22799 -20.52897 -19.51944 -18.61014 -18.08931 -17.83389 -17.48702 -17.24980 -16.71120 -16.11383 -15.39481 -15.25875 -14.75363 -14.50525 -14.22633 -14.04537 -13.90701 -13.74980 -13.66942 -13.45354 -13.10905 -12.86079 -12.68486 -12.38722 -12.12071 -12.05901 -11.71305 -11.68193 -11.51858 -11.37163 -11.18961 -11.11784 -10.85834 -10.70100 -10.44121 -10.32833 -10.20366 -9.70890 -9.49107 -8.94422 -8.44765 -7.95260 -7.91259 -6.39436 -3.80114 0.89176 1.39606 2.44304 2.72071 2.96268 3.17715 3.27959 3.35319 3.63576 3.80435 3.93024 4.06457 4.21949 4.26298 4.38999 4.64194 4.66177 4.81752 4.84970 4.89673 4.98621 5.06431 5.20489 5.25309 5.26945 5.37141 5.38539 5.45542 5.58792 5.63494 5.66953 5.71466 5.77379 5.78608 5.94932 6.01910 6.26243 6.28874 6.94087 7.09463 7.22289 7.57392 7.66235 7.89652 8.08497 8.64257 9.20729 9.56877 10.08990 10.78529 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.003358 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.902471 B = 8337.276194 C =10000.428186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.186 4.186 4 C -0.021 4.021 5 C 0.615 3.385 6 O -0.526 6.526 7 N -0.605 5.605 8 C 0.066 3.934 9 C 0.052 3.948 10 H 0.138 0.862 11 C -0.131 4.131 12 C 0.108 3.892 13 H 0.130 0.870 14 C 0.042 3.958 15 N -0.487 5.487 16 C 0.035 3.965 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.326 5.326 29 O 0.121 5.879 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.180 0.820 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.391 0.609 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 3.306 18.852 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.209 4.209 4 C -0.180 4.180 5 C 0.401 3.599 6 O -0.401 6.401 7 N -0.339 5.339 8 C -0.058 4.058 9 C -0.057 4.057 10 H 0.156 0.844 11 C -0.170 4.170 12 C 0.006 3.994 13 H 0.148 0.852 14 C -0.087 4.087 15 N -0.210 5.210 16 C -0.097 4.097 17 C 0.231 3.769 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.027 5.027 29 O 0.046 5.954 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.197 0.803 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.224 0.776 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.200 3.245 18.546 21.413 hybrid contribution -1.538 0.484 -0.909 1.851 sum -11.738 3.729 17.637 21.511 Atomic orbital electron populations 1.20383 0.83355 1.05008 1.04399 1.24507 0.96596 0.85411 1.03065 1.22405 0.89652 1.01588 1.07215 1.23410 0.96512 0.90207 1.07853 1.16468 0.80620 0.85819 0.76989 1.90797 1.86220 1.12203 1.50851 1.49080 1.05263 1.08206 1.71394 1.23410 0.98900 0.80013 1.03472 1.24831 0.90186 0.99818 0.90845 0.84446 1.23937 1.01610 0.93842 0.97583 1.24270 0.78934 0.99172 0.97070 0.85225 1.23652 1.01171 0.89163 0.94691 1.64645 1.53011 1.03331 1.00021 1.22144 0.95439 0.99550 0.92578 1.19694 0.87505 0.85116 0.84622 1.90517 1.25961 1.43621 1.85707 1.41862 1.25589 1.46034 1.06896 1.19740 1.08636 1.30106 0.84140 0.87898 1.25250 0.96424 0.96532 0.99795 1.69620 1.20933 1.33689 1.30198 0.85810 0.79319 0.78062 0.81220 1.19218 1.20745 1.20804 1.74269 0.97036 1.15531 1.15870 1.84807 1.11202 1.33508 1.65914 0.89547 0.88944 0.88821 0.80260 0.89639 0.90560 0.88027 0.89927 0.92070 0.88452 0.89221 0.93108 0.77612 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.44 36.00 0.38 0.08 16 2 C -0.03 -0.28 7.47 -35.35 -0.26 -0.55 16 3 C -0.19 -1.99 10.92 -39.08 -0.43 -2.42 16 4 C -0.02 -0.28 7.05 -82.53 -0.58 -0.87 16 5 C 0.61 9.46 7.92 -12.10 -0.10 9.36 16 6 O -0.53 -9.24 17.31 5.37 0.09 -9.15 16 7 N -0.60 -8.46 2.95 -157.74 -0.46 -8.92 16 8 C 0.07 0.83 4.62 -1.68 -0.01 0.82 16 9 C 0.05 0.62 5.21 -62.30 -0.32 0.29 16 10 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 11 C -0.13 -1.38 6.80 -22.32 -0.15 -1.54 16 12 C 0.11 1.40 5.22 -62.58 -0.33 1.08 16 13 H 0.13 1.59 8.08 -51.93 -0.42 1.17 16 14 C 0.04 0.68 5.44 -1.44 -0.01 0.67 16 15 N -0.49 -7.96 4.84 -218.15 -1.06 -9.01 16 16 C 0.03 0.63 4.13 -4.98 -0.02 0.61 16 17 C 0.45 10.77 7.63 -10.99 -0.08 10.69 16 18 O -0.57 -15.84 15.47 5.55 0.09 -15.76 16 19 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 24 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 N -0.33 -4.24 9.97 33.29 0.33 -3.91 16 29 O 0.12 1.33 11.18 17.23 0.19 1.53 16 30 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.09 1.21 5.35 -51.93 -0.28 0.93 16 35 H 0.08 0.87 7.76 -51.94 -0.40 0.47 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.15 7.42 -51.93 -0.39 0.76 16 39 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.05 0.92 6.11 -51.93 -0.32 0.60 16 42 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -35.09 360.16 -7.34 -42.43 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.44 Total: 9.86 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -2.16 Total: 10.14 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.52 Total: -60.86 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.37 Total: -23.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.09 -7.34 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753416363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.812 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds