Wall clock time and date at job start Tue Mar 31 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 N 1.46507 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99782 * 270.00174 * 4 3 2 6 6 H 1.07997 * 120.00266 * 38.12586 * 5 4 3 7 7 C 1.38815 * 119.99386 * 218.13066 * 5 4 3 8 8 N 1.31617 * 120.00109 * 21.28041 * 7 5 4 9 9 Si 1.86796 * 119.99621 * 201.27871 * 7 5 4 10 10 H 1.48504 * 109.47500 * 89.99880 * 9 7 5 11 11 H 1.48499 * 109.47129 * 210.00052 * 9 7 5 12 12 H 1.48503 * 109.47341 * 330.00255 * 9 7 5 13 13 C 1.46499 * 120.00080 * 89.99636 * 4 3 2 14 14 C 1.53004 * 109.47165 * 264.50246 * 13 4 3 15 15 N 1.46499 * 109.47165 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00006 * 180.02562 * 15 14 13 17 17 O 1.21625 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.47163 * 119.99690 * 179.97438 * 16 15 14 19 19 C 1.38413 * 126.88073 * 179.97438 * 18 16 15 20 20 C 1.39674 * 105.35697 * 180.02562 * 19 18 16 21 21 C 1.50695 * 126.06805 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47638 * 89.99552 * 21 20 19 23 23 F 1.39903 * 109.46858 * 209.99986 * 21 20 19 24 24 F 1.39908 * 109.47036 * 329.99381 * 21 20 19 25 25 N 1.30869 * 107.86380 * 359.97438 * 20 19 18 26 26 N 1.28450 * 110.92241 * 359.71961 * 25 20 19 27 27 H 0.97002 * 125.18500 * 180.27540 * 26 25 20 28 28 H 1.08999 * 109.47588 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47334 * 300.00502 * 1 2 3 30 30 H 1.09004 * 109.47069 * 60.00363 * 1 2 3 31 31 H 1.08996 * 109.47340 * 239.99314 * 2 1 3 32 32 H 1.09004 * 109.47069 * 119.99637 * 2 1 3 33 33 H 1.09002 * 109.47090 * 59.99909 * 3 2 1 34 34 H 1.09000 * 109.47302 * 299.99427 * 3 2 1 35 35 H 0.97002 * 119.99410 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47022 * 144.50262 * 13 4 3 37 37 H 1.09004 * 109.46727 * 24.50134 * 13 4 3 38 38 H 1.09002 * 109.47015 * 60.00209 * 14 13 4 39 39 H 1.09002 * 109.47038 * 300.00357 * 14 13 4 40 40 H 0.97005 * 119.99692 * 359.97438 * 15 14 13 41 41 H 1.07994 * 127.32055 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4427 1.1869 6 1 3.8216 0.8654 2.0223 7 6 5.3550 2.1851 1.3155 8 7 5.5887 3.1901 0.4985 9 14 6.5922 1.7575 2.6481 10 1 7.5711 0.7747 2.1179 11 1 7.3068 2.9879 3.0733 12 1 5.8823 1.1700 3.8126 13 6 4.2380 1.4423 -1.2678 14 6 4.6129 0.0063 -1.6399 15 7 5.3454 0.0060 -2.9086 16 6 5.7789 -1.1560 -3.4362 17 8 5.5623 -2.2043 -2.8587 18 6 6.5142 -1.1563 -4.7109 19 6 7.0216 -2.2584 -5.3770 20 6 7.6286 -1.7486 -6.5270 21 6 8.3323 -2.5526 -7.5896 22 9 7.4133 -2.9288 -8.5750 23 9 9.3442 -1.7780 -8.1669 24 9 8.8929 -3.6976 -7.0133 25 7 7.4779 -0.4486 -6.5178 26 7 6.8275 -0.0696 -5.4769 27 1 6.5970 0.8486 -5.2656 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.4033 3.7091 0.5886 36 1 5.1441 2.0390 -1.1638 37 1 3.6101 1.8683 -2.0503 38 1 3.7067 -0.5905 -1.7439 39 1 5.2407 -0.4197 -0.8573 40 1 5.5178 0.8421 -3.3693 41 1 6.9615 -3.2926 -5.0720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493322708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:12 Heat of formation + Delta-G solvation = -119.728956 kcal Electronic energy + Delta-G solvation = -28384.803245 eV Core-core repulsion = 23693.186501 eV Total energy + Delta-G solvation = -4691.616744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.21405 -48.73870 -48.71201 -44.07338 -40.63723 -38.26264 -36.00425 -34.62437 -33.90283 -32.80168 -32.29063 -29.85159 -27.77299 -27.34246 -25.81576 -24.27621 -22.79522 -22.58591 -22.08738 -21.74077 -20.39279 -19.61671 -19.41898 -18.64510 -18.55711 -17.27673 -17.12618 -17.01288 -16.79350 -16.24868 -15.88054 -15.62766 -15.55753 -15.49333 -15.13839 -15.11739 -15.01360 -14.85480 -14.81877 -14.65026 -14.35289 -14.27660 -13.58799 -13.36515 -13.07187 -12.92682 -12.65322 -12.58200 -12.51984 -12.22391 -12.02697 -11.87129 -11.70912 -11.50956 -11.27380 -11.11250 -10.66035 -10.55772 -10.17101 -8.59730 -7.85498 -5.50809 -0.14508 0.68476 1.06555 1.42880 1.48299 1.53760 1.59123 1.90168 1.93702 2.47612 2.50096 2.80350 3.20073 3.28922 3.37849 3.63910 3.75701 3.97368 4.14116 4.22790 4.32384 4.38418 4.51740 4.68461 4.72725 4.81903 4.86463 5.01232 5.09275 5.21232 5.24145 5.29111 5.45168 5.48815 5.63175 5.64754 5.74944 6.23539 6.36646 6.45798 6.90211 7.15088 7.81765 8.33280 9.07835 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.002591 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.949360 B =10805.736540 C =11899.544310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.051 0.949 7 C -0.024 4.024 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.273 1.273 13 C 0.140 3.860 14 C 0.119 3.881 15 N -0.701 5.701 16 C 0.589 3.411 17 O -0.557 6.557 18 C -0.023 4.023 19 C -0.111 4.111 20 C -0.080 4.080 21 C 0.569 3.431 22 F -0.169 7.169 23 F -0.170 7.170 24 F -0.163 7.163 25 N -0.213 5.213 26 N -0.333 5.333 27 H 0.469 0.531 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.410 0.590 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -6.635 -15.928 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.399 4.399 6 H 0.068 0.932 7 C -0.222 4.222 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.198 1.198 13 C 0.013 3.987 14 C -0.007 4.007 15 N -0.352 5.352 16 C 0.373 3.627 17 O -0.434 6.434 18 C -0.152 4.152 19 C -0.139 4.139 20 C -0.237 4.237 21 C 0.512 3.488 22 F -0.150 7.150 23 F -0.151 7.151 24 F -0.144 7.144 25 N -0.050 5.050 26 N -0.056 5.056 27 H 0.320 0.680 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.246 0.754 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.146 -6.297 -16.061 17.289 hybrid contribution 0.735 -0.079 1.143 1.361 sum 1.880 -6.376 -14.918 16.332 Atomic orbital electron populations 1.21661 0.94445 1.01753 1.01955 1.22025 0.96300 0.98719 1.00413 1.21075 0.83259 0.94513 0.99183 1.43824 1.00838 1.85284 1.01663 1.19137 1.06522 1.22101 0.92130 0.93171 1.25684 1.02031 0.94741 0.99748 1.70047 1.26219 1.17711 1.41079 0.85615 0.79775 0.76968 0.80182 1.21635 1.21727 1.19788 1.20987 0.98909 0.92005 0.86836 1.22075 0.94537 1.01437 0.82667 1.45799 1.56421 1.08482 1.24548 1.17041 0.78598 0.84296 0.82746 1.90853 1.58217 1.32512 1.61779 1.21591 1.08289 0.88751 0.96533 1.22089 0.98454 1.00909 0.92477 1.21730 1.10395 0.91877 0.99714 1.16560 0.76234 0.77043 0.78922 1.93249 1.66452 1.91712 1.63583 1.93233 1.61401 1.74953 1.85537 1.93244 1.85532 1.51200 1.84444 1.73048 1.10716 1.13643 1.07608 1.43794 1.37523 1.10834 1.13403 0.67996 0.92311 0.92787 0.92041 0.93211 0.94325 0.94467 0.93359 0.93717 0.90740 0.92930 0.92448 0.94451 0.75365 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.13 -4.44 6.26 30.59 0.19 -4.25 16 3 C 0.14 5.51 5.71 86.38 0.49 6.01 16 4 N -0.60 -26.79 2.43 -701.98 -1.71 -28.50 16 5 C -0.27 -13.77 9.42 84.03 0.79 -12.98 16 6 H 0.05 2.65 7.92 -2.91 -0.02 2.63 16 7 C -0.02 -1.22 5.00 84.86 0.42 -0.79 16 8 N -0.91 -48.15 11.43 21.65 0.25 -47.90 16 9 Si 0.95 42.66 29.60 68.60 2.03 44.69 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.14 5.53 5.50 86.38 0.47 6.00 16 14 C 0.12 4.28 5.97 86.38 0.52 4.79 16 15 N -0.70 -19.18 5.55 -466.63 -2.59 -21.77 16 16 C 0.59 16.93 7.80 86.59 0.68 17.61 16 17 O -0.56 -20.59 16.92 -4.11 -0.07 -20.66 16 18 C -0.02 -0.53 7.16 40.79 0.29 -0.23 16 19 C -0.11 -2.42 10.48 22.66 0.24 -2.18 16 20 C -0.08 -1.68 6.56 43.05 0.28 -1.40 16 21 C 0.57 11.09 3.55 71.23 0.25 11.34 16 22 F -0.17 -3.30 17.30 44.97 0.78 -2.52 16 23 F -0.17 -3.47 17.26 44.97 0.78 -2.70 16 24 F -0.16 -3.10 17.04 44.97 0.77 -2.34 16 25 N -0.21 -4.34 12.08 -47.49 -0.57 -4.91 16 26 N -0.33 -5.76 6.85 -47.99 -0.33 -6.09 16 27 H 0.47 4.86 8.22 -220.00 -1.81 3.05 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.65 6.66 -2.39 -0.02 1.63 16 32 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.05 1.67 7.86 -2.39 -0.02 1.65 16 35 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 36 H 0.07 3.38 5.53 -2.39 -0.01 3.36 16 37 H 0.05 1.83 7.83 -2.38 -0.02 1.81 16 38 H 0.06 2.10 6.66 -2.39 -0.02 2.08 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.41 8.26 7.66 -92.70 -0.71 7.55 16 41 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -62.91 364.54 3.26 -59.65 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -1.41 Total: 11.98 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.34 Total: 21.07 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.95 Total: -109.17 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 2.32 Total: -7.56 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -62.91 3.26 -59.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493322708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.083 kcal (2) G-P(sol) polarization free energy of solvation -62.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds