Wall clock time and date at job start Tue Mar 31 2020 18:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99929 * 2 1 4 4 C 1.53001 * 109.47108 * 66.04868 * 3 2 1 5 5 N 1.46493 * 109.47426 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00098 * 179.97438 * 5 4 3 7 7 O 1.21728 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.46493 * 119.99703 * 179.97438 * 6 5 4 9 9 C 1.37786 * 125.85504 * 179.97438 * 8 6 5 10 10 C 1.39937 * 107.68681 * 180.02562 * 9 8 6 11 11 O 1.35120 * 145.14201 * 179.97438 * 10 9 8 12 12 C 1.34381 * 109.62445 * 180.02562 * 11 10 9 13 13 C 1.34462 * 109.44570 * 0.27163 * 12 11 10 14 14 C 1.39139 * 107.40224 * 0.02562 * 10 9 8 15 15 N 1.37105 * 108.11413 * 359.97438 * 14 10 9 16 16 H 0.96994 * 125.74705 * 180.02562 * 15 14 10 17 17 C 1.46901 * 110.99863 * 236.05143 * 2 1 3 18 18 C 1.50701 * 109.46990 * 293.95014 * 17 2 1 19 19 O 1.21287 * 119.99842 * 0.02562 * 18 17 2 20 20 N 1.34773 * 119.99886 * 180.02562 * 18 17 2 21 21 C 1.37101 * 120.00042 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99427 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00484 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47096 * 59.99888 * 25 23 21 27 27 H 1.48500 * 109.47710 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47242 * 300.00383 * 25 23 21 29 29 H 1.09002 * 109.47857 * 59.99476 * 1 2 3 30 30 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47170 * 299.99565 * 1 2 3 32 32 H 1.09001 * 109.47295 * 306.04953 * 3 2 1 33 33 H 1.08996 * 109.47501 * 186.05026 * 3 2 1 34 34 H 1.09001 * 109.46973 * 59.99887 * 4 3 2 35 35 H 1.09004 * 109.46922 * 300.00143 * 4 3 2 36 36 H 0.96999 * 119.99730 * 0.02562 * 5 4 3 37 37 H 1.07994 * 126.15398 * 0.02562 * 9 8 6 38 38 H 1.08002 * 125.27191 * 179.97438 * 12 11 10 39 39 H 1.07999 * 126.40979 * 179.70732 * 13 12 11 40 40 H 1.09000 * 109.47182 * 53.95140 * 17 2 1 41 41 H 1.08999 * 109.46927 * 173.95355 * 17 2 1 42 42 H 0.96999 * 120.00173 * 0.02562 * 20 18 17 43 43 H 0.96993 * 120.00033 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4253 1.3181 6 6 1.9544 4.2244 2.3846 7 8 1.3371 3.8094 3.3482 8 6 2.4794 5.5921 2.3846 9 6 2.3444 6.5084 3.4047 10 6 2.9860 7.6862 3.0058 11 8 3.3018 8.9514 3.3600 12 6 3.9976 9.5367 2.3705 13 6 4.1437 8.6703 1.3527 14 6 3.5070 7.4663 1.7345 15 7 3.1938 6.1848 1.3613 16 1 3.4336 5.7648 0.5206 17 6 1.9954 -0.7659 -1.1377 18 6 1.6369 -2.2203 -0.9730 19 8 1.0047 -2.5831 -0.0036 20 7 2.0188 -3.1180 -1.9029 21 6 1.6923 -4.4411 -1.7534 22 1 1.1286 -4.7639 -0.8905 23 6 2.0855 -5.3665 -2.7123 24 7 2.7710 -4.9735 -3.7625 25 14 1.6412 -7.1693 -2.5083 26 1 0.1640 -7.3122 -2.4564 27 1 2.1739 -7.9437 -3.6580 28 1 2.2330 -7.6853 -1.2478 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8309 33 1 3.0796 1.3445 -0.1083 34 1 2.0658 1.5015 2.1492 35 1 0.5471 2.0844 1.4266 36 1 2.6474 3.7561 0.5501 37 1 1.8351 6.3466 4.3431 38 1 4.3762 10.5481 2.3880 39 1 4.6535 8.8579 0.4193 40 1 1.5610 -0.3871 -2.0628 41 1 3.0796 -0.6610 -1.1757 42 1 2.5248 -2.8279 -2.6780 43 1 3.0452 -5.6194 -4.4321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663192637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:12 Heat of formation + Delta-G solvation = 6.724754 kcal Electronic energy + Delta-G solvation = -26781.517286 eV Core-core repulsion = 22637.240726 eV Total energy + Delta-G solvation = -4144.276559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.33353 -40.52850 -39.04123 -38.59535 -36.85615 -34.86434 -33.84660 -32.78973 -31.29127 -31.11980 -30.04712 -28.46705 -27.69550 -25.51792 -24.39716 -23.16451 -22.09687 -21.36105 -21.11509 -20.38496 -19.20731 -18.81585 -17.88259 -17.52691 -16.68142 -16.59044 -16.16371 -15.96097 -15.74429 -15.17652 -15.02305 -14.66154 -14.46226 -14.19765 -13.99907 -13.85982 -13.67902 -13.48589 -13.34638 -13.21005 -13.00186 -12.17619 -12.17164 -11.94916 -11.55743 -11.46757 -11.31851 -11.12725 -10.95349 -10.53583 -10.50813 -10.45432 -10.23382 -9.49482 -9.42843 -9.03855 -8.52594 -8.29589 -8.02509 -7.93373 -6.43985 -3.84873 0.57258 1.82418 2.05738 2.25161 2.39733 2.83111 2.97506 3.18880 3.24794 3.29296 3.86886 3.98054 4.13008 4.22415 4.30961 4.52327 4.72832 4.84999 4.89178 5.05855 5.06729 5.09052 5.21565 5.29641 5.35331 5.57166 5.63126 5.67752 5.74511 5.79963 5.86647 5.89235 5.93987 6.00101 6.16906 6.23710 6.51614 6.71574 6.82444 7.05764 7.15518 7.26078 7.53135 7.76762 8.03664 8.59121 9.15811 9.51456 10.03265 10.73631 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.001565 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.898077 B =17883.825603 C =18451.436416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.044 3.956 4 C 0.122 3.878 5 N -0.726 5.726 6 C 0.590 3.410 7 O -0.516 6.516 8 C 0.006 3.994 9 C -0.076 4.076 10 C -0.041 4.041 11 O -0.168 6.168 12 C 0.014 3.986 13 C -0.204 4.204 14 C 0.012 3.988 15 N -0.533 5.533 16 H 0.420 0.580 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.016 0.984 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.162 0.838 38 H 0.213 0.787 39 H 0.154 0.846 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 28.817 4.816 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.238 5.238 3 C -0.085 4.085 4 C -0.001 4.001 5 N -0.377 5.377 6 C 0.376 3.624 7 O -0.390 6.390 8 C -0.106 4.106 9 C -0.104 4.104 10 C -0.092 4.092 11 O -0.065 6.065 12 C -0.054 4.054 13 C -0.225 4.225 14 C -0.101 4.101 15 N -0.137 5.137 16 H 0.258 0.742 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.227 0.773 37 H 0.180 0.820 38 H 0.229 0.771 39 H 0.172 0.828 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.514 27.892 6.598 28.876 hybrid contribution 0.493 -0.261 -2.397 2.461 sum 4.007 27.631 4.201 28.234 Atomic orbital electron populations 1.22644 0.86363 1.04883 0.99165 1.61442 1.09033 1.10206 1.43151 1.22255 1.00792 0.89996 0.95486 1.21430 0.99933 0.79735 0.99048 1.45785 1.58068 1.14859 1.19018 1.16763 0.79924 0.82643 0.83114 1.90919 1.40399 1.73951 1.33780 1.20270 1.05597 0.94721 0.90005 1.19934 1.03394 0.86955 1.00105 1.19282 1.08088 0.86502 0.95361 1.84042 1.59927 1.22078 1.40483 1.24093 0.96589 0.98991 0.85734 1.20576 1.08773 0.90647 1.02522 1.19040 1.06261 0.87946 0.96844 1.41126 1.45930 1.09720 1.16921 0.74190 1.21871 1.00654 0.94308 0.91580 1.19684 0.85617 0.86567 0.85321 1.90495 1.43850 1.80068 1.31581 1.41851 1.49356 1.07367 1.21436 1.19661 1.33002 0.82276 1.07994 0.87912 1.25255 0.96758 1.00594 0.95270 1.69602 1.37972 1.35901 1.10901 0.85911 0.78915 0.81634 0.77728 1.19907 1.20994 1.19865 0.96594 0.88275 0.91752 0.94555 0.90252 0.89659 0.90624 0.77288 0.82026 0.77070 0.82799 0.93341 0.89329 0.77518 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.96 60.06 0.54 0.81 16 2 N -0.51 -8.05 4.50 -244.37 -1.10 -9.15 16 3 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 4 C 0.12 1.34 5.60 -4.05 -0.02 1.32 16 5 N -0.73 -6.37 5.55 -61.68 -0.34 -6.71 16 6 C 0.59 6.55 7.78 -12.93 -0.10 6.45 16 7 O -0.52 -7.72 16.87 5.16 0.09 -7.64 16 8 C 0.01 0.06 7.03 -81.85 -0.58 -0.52 16 9 C -0.08 -0.79 10.58 -39.11 -0.41 -1.20 16 10 C -0.04 -0.41 8.20 -38.61 -0.32 -0.73 16 11 O -0.17 -1.52 10.68 3.20 0.03 -1.49 16 12 C 0.01 0.08 12.02 29.40 0.35 0.43 16 13 C -0.20 -1.25 10.89 -39.70 -0.43 -1.68 16 14 C 0.01 0.11 8.11 -83.95 -0.68 -0.58 16 15 N -0.53 -3.85 6.08 -7.04 -0.04 -3.90 16 16 H 0.42 1.67 8.16 -40.82 -0.33 1.34 16 17 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 18 C 0.44 10.18 7.47 -10.99 -0.08 10.10 16 19 O -0.58 -15.23 13.91 5.55 0.08 -15.15 16 20 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 31 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 36 H 0.39 2.16 7.56 -40.82 -0.31 1.85 16 37 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.21 0.20 8.06 -52.49 -0.42 -0.22 16 39 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -35.24 369.62 -7.33 -42.57 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.23 Total: 9.81 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -2.02 Total: 7.75 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.82 Total: -57.26 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.20 Total: -24.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.24 -7.33 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663192637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.295 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds