Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99929 * 2 1 4 4 C 1.53001 * 109.47108 * 66.04868 * 3 2 1 5 5 N 1.46493 * 109.47426 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00098 * 179.97438 * 5 4 3 7 7 O 1.21728 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.46493 * 119.99703 * 179.97438 * 6 5 4 9 9 C 1.37786 * 125.85504 * 179.97438 * 8 6 5 10 10 C 1.39937 * 107.68681 * 180.02562 * 9 8 6 11 11 O 1.35120 * 145.14201 * 179.97438 * 10 9 8 12 12 C 1.34381 * 109.62445 * 180.02562 * 11 10 9 13 13 C 1.34462 * 109.44570 * 0.27163 * 12 11 10 14 14 C 1.39139 * 107.40224 * 0.02562 * 10 9 8 15 15 N 1.37105 * 108.11413 * 359.97438 * 14 10 9 16 16 H 0.96994 * 125.74705 * 180.02562 * 15 14 10 17 17 C 1.46901 * 110.99863 * 236.05143 * 2 1 3 18 18 C 1.50701 * 109.46990 * 293.95014 * 17 2 1 19 19 O 1.21287 * 119.99842 * 0.02562 * 18 17 2 20 20 N 1.34773 * 119.99886 * 180.02562 * 18 17 2 21 21 C 1.37101 * 120.00042 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99427 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00484 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47096 * 59.99888 * 25 23 21 27 27 H 1.48500 * 109.47710 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47242 * 300.00383 * 25 23 21 29 29 H 1.09002 * 109.47857 * 59.99476 * 1 2 3 30 30 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47170 * 299.99565 * 1 2 3 32 32 H 1.09001 * 109.47295 * 306.04953 * 3 2 1 33 33 H 1.08996 * 109.47501 * 186.05026 * 3 2 1 34 34 H 1.09001 * 109.46973 * 59.99887 * 4 3 2 35 35 H 1.09004 * 109.46922 * 300.00143 * 4 3 2 36 36 H 0.96999 * 119.99730 * 0.02562 * 5 4 3 37 37 H 1.07994 * 126.15398 * 0.02562 * 9 8 6 38 38 H 1.08002 * 125.27191 * 179.97438 * 12 11 10 39 39 H 1.07999 * 126.40979 * 179.70732 * 13 12 11 40 40 H 1.09000 * 109.47182 * 53.95140 * 17 2 1 41 41 H 1.08999 * 109.46927 * 173.95355 * 17 2 1 42 42 H 0.96999 * 120.00173 * 0.02562 * 20 18 17 43 43 H 0.96993 * 120.00033 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4253 1.3181 6 6 1.9544 4.2244 2.3846 7 8 1.3371 3.8094 3.3482 8 6 2.4794 5.5921 2.3846 9 6 2.3444 6.5084 3.4047 10 6 2.9860 7.6862 3.0058 11 8 3.3018 8.9514 3.3600 12 6 3.9976 9.5367 2.3705 13 6 4.1437 8.6703 1.3527 14 6 3.5070 7.4663 1.7345 15 7 3.1938 6.1848 1.3613 16 1 3.4336 5.7648 0.5206 17 6 1.9954 -0.7659 -1.1377 18 6 1.6369 -2.2203 -0.9730 19 8 1.0047 -2.5831 -0.0036 20 7 2.0188 -3.1180 -1.9029 21 6 1.6923 -4.4411 -1.7534 22 1 1.1286 -4.7639 -0.8905 23 6 2.0855 -5.3665 -2.7123 24 7 2.7710 -4.9735 -3.7625 25 14 1.6412 -7.1693 -2.5083 26 1 0.1640 -7.3122 -2.4564 27 1 2.1739 -7.9437 -3.6580 28 1 2.2330 -7.6853 -1.2478 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9274 -0.8309 33 1 3.0796 1.3445 -0.1083 34 1 2.0658 1.5015 2.1492 35 1 0.5471 2.0844 1.4266 36 1 2.6474 3.7561 0.5501 37 1 1.8351 6.3466 4.3431 38 1 4.3762 10.5481 2.3880 39 1 4.6535 8.8579 0.4193 40 1 1.5610 -0.3871 -2.0628 41 1 3.0796 -0.6610 -1.1757 42 1 2.5248 -2.8279 -2.6780 43 1 3.0452 -5.6194 -4.4321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663192637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = -22.304687 kcal Electronic energy + Delta-G solvation = -26782.776097 eV Core-core repulsion = 22637.240726 eV Total energy + Delta-G solvation = -4145.535370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.92210 -41.30618 -40.38965 -39.66764 -38.17595 -36.07900 -35.61148 -33.33605 -33.26622 -31.82916 -31.00331 -29.44154 -28.82102 -27.03084 -25.71200 -24.12104 -22.71974 -22.36755 -21.73870 -21.23464 -20.93435 -19.84666 -19.45771 -18.19123 -17.71496 -17.49525 -17.32315 -16.90675 -16.60559 -16.51977 -16.30302 -16.10129 -15.61583 -15.48237 -15.09965 -14.88459 -14.64883 -14.58297 -14.41450 -14.10521 -13.77179 -13.66329 -13.44298 -13.03543 -12.95871 -12.78520 -12.58899 -12.55111 -12.41077 -12.17774 -12.10037 -11.50311 -11.44238 -11.08423 -10.32112 -10.27448 -9.98344 -9.66907 -9.24240 -8.90479 -8.45332 -5.93528 -0.09668 1.18262 1.40322 1.42406 1.47609 1.52706 1.65257 1.68405 2.07986 2.16229 2.17290 2.31336 2.88707 3.21872 3.42902 3.61118 3.68333 3.83870 3.95606 4.04688 4.25465 4.30248 4.36099 4.44997 4.47840 4.53735 4.63009 4.64484 4.68994 4.76046 4.83299 4.92919 5.02654 5.15771 5.22378 5.42064 5.42465 5.53320 5.85013 6.04925 6.13749 6.16093 6.26044 6.42824 6.62887 6.96381 7.15109 7.58901 8.15450 8.71693 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.001565 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.898077 B =17883.825603 C =18451.436416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.051 3.949 4 C 0.129 3.871 5 N -0.706 5.706 6 C 0.592 3.408 7 O -0.563 6.563 8 C -0.003 4.003 9 C -0.094 4.094 10 C -0.079 4.079 11 O -0.188 6.188 12 C 0.027 3.973 13 C -0.213 4.213 14 C 0.016 3.984 15 N -0.516 5.516 16 H 0.436 0.564 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.155 0.845 38 H 0.257 0.743 39 H 0.184 0.816 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.397 0.603 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 31.007 2.900 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.359 5.359 6 C 0.380 3.620 7 O -0.441 6.441 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.130 4.130 11 O -0.087 6.087 12 C -0.040 4.040 13 C -0.234 4.234 14 C -0.099 4.099 15 N -0.122 5.122 16 H 0.278 0.722 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.273 0.727 39 H 0.202 0.798 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.231 0.769 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.134 30.102 4.611 30.883 hybrid contribution 0.031 -0.771 -1.756 1.918 sum 5.164 29.331 2.855 29.918 Atomic orbital electron populations 1.22484 0.86846 1.02456 1.00704 1.61316 1.08927 1.13059 1.43066 1.22259 1.02015 0.87482 0.95880 1.21204 0.99193 0.80462 0.98629 1.45511 1.57467 1.13729 1.19144 1.16913 0.79194 0.83138 0.82775 1.90894 1.42675 1.74958 1.35621 1.19880 1.06874 0.93991 0.90858 1.20051 1.03825 0.87899 1.00385 1.19441 1.09697 0.87164 0.96667 1.84036 1.60779 1.21821 1.42041 1.25111 0.94260 1.00304 0.84344 1.21013 1.09044 0.89402 1.03985 1.19504 1.05481 0.88593 0.96289 1.41000 1.44907 1.09312 1.16937 0.72249 1.21737 1.02376 0.89857 0.93053 1.20847 0.83723 0.88952 0.83853 1.90478 1.45164 1.81500 1.33063 1.41913 1.50068 1.06962 1.22232 1.19611 1.34412 0.84206 1.08080 0.90449 1.25977 0.96287 1.04130 0.94708 1.69656 1.38064 1.37177 1.11160 0.85025 0.78575 0.77012 0.77945 1.19811 1.19480 1.19899 0.94583 0.92578 0.90687 0.91838 0.88121 0.91893 0.91717 0.74970 0.82692 0.72688 0.79833 0.90867 0.86648 0.76948 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 8.96 127.69 1.14 1.85 16 2 N -0.54 -16.00 4.50 -927.04 -4.17 -20.18 16 3 C 0.05 0.97 5.07 86.30 0.44 1.41 16 4 C 0.13 2.69 5.60 86.38 0.48 3.18 16 5 N -0.71 -11.25 5.55 -467.24 -2.59 -13.85 16 6 C 0.59 13.11 7.78 86.39 0.67 13.78 16 7 O -0.56 -17.58 16.87 -4.44 -0.07 -17.65 16 8 C 0.00 -0.07 7.03 40.19 0.28 0.22 16 9 C -0.09 -2.01 10.58 22.57 0.24 -1.78 16 10 C -0.08 -1.58 8.20 22.90 0.19 -1.39 16 11 O -0.19 -3.24 10.68 -11.47 -0.12 -3.36 16 12 C 0.03 0.22 12.02 66.96 0.80 1.02 16 13 C -0.21 -1.94 10.89 22.20 0.24 -1.70 16 14 C 0.02 0.24 8.11 39.32 0.32 0.56 16 15 N -0.52 -6.55 6.08 -176.18 -1.07 -7.62 16 16 H 0.44 2.25 8.16 -92.71 -0.76 1.49 16 17 C 0.06 1.93 5.45 85.56 0.47 2.39 16 18 C 0.44 20.31 7.47 87.66 0.66 20.97 16 19 O -0.62 -33.64 13.91 -3.05 -0.04 -33.68 16 20 N -0.57 -28.80 5.29 -306.99 -1.62 -30.43 16 21 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.59 5.50 84.92 0.47 -0.13 16 24 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 25 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 2.23 5.82 -2.39 -0.01 2.21 16 31 H 0.07 2.09 6.47 -2.39 -0.02 2.07 16 32 H 0.06 0.92 8.12 -2.39 -0.02 0.91 16 33 H 0.10 1.52 7.93 -2.39 -0.02 1.51 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.52 6.55 -2.38 -0.02 1.50 16 36 H 0.41 3.29 7.56 -92.71 -0.70 2.59 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.26 -0.64 8.06 -2.91 -0.02 -0.66 16 39 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 41 H 0.12 3.07 7.93 -2.39 -0.02 3.06 16 42 H 0.40 18.70 7.90 -92.71 -0.73 17.96 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -80.56 369.62 -1.27 -81.82 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -1.09 Total: 26.34 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.21 Total: 22.43 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -9.18 Total: -120.66 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.24 Total: -54.69 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -80.56 -1.27 -81.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663192637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.519 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds