Wall clock time and date at job start Tue Mar 31 2020 17:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46804 * 2 1 4 4 C 1.52995 * 109.47091 * 239.99729 * 2 1 3 5 5 S 1.81404 * 109.47222 * 64.99807 * 4 2 1 6 6 C 1.81404 * 101.92211 * 179.97438 * 5 4 2 7 7 O 1.42094 * 108.57753 * 294.48819 * 5 4 2 8 8 O 1.42101 * 108.57561 * 65.51129 * 5 4 2 9 9 C 1.50702 * 109.47102 * 119.99746 * 2 1 3 10 10 O 1.21285 * 119.99841 * 120.00340 * 9 2 1 11 11 N 1.34777 * 119.99801 * 299.99772 * 9 2 1 12 12 C 1.46504 * 119.99539 * 180.02562 * 11 9 2 13 13 C 1.53007 * 109.46854 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.50666 * 305.09651 * 13 12 11 15 15 C 1.53294 * 109.50920 * 185.00072 * 13 12 11 16 16 N 1.47156 * 108.38179 * 187.77188 * 15 13 12 17 17 C 1.36932 * 120.98258 * 230.55724 * 16 15 13 18 18 H 1.08004 * 120.00011 * 26.22736 * 17 16 15 19 19 C 1.38817 * 119.99987 * 206.23606 * 17 16 15 20 20 N 1.31620 * 119.99951 * 16.91659 * 19 17 16 21 21 Si 1.86803 * 119.99823 * 196.91397 * 19 17 16 22 22 H 1.48494 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46999 * 120.00128 * 21 19 17 24 24 H 1.48494 * 109.47001 * 239.99677 * 21 19 17 25 25 C 1.47153 * 118.03488 * 50.53133 * 16 15 13 26 26 C 1.53296 * 108.38697 * 309.46719 * 25 16 15 27 27 O 1.42960 * 109.51199 * 65.25099 * 13 12 11 28 28 H 1.08997 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46565 * 300.00086 * 1 2 3 30 30 H 1.08997 * 109.47121 * 60.00044 * 1 2 3 31 31 H 1.09001 * 109.47134 * 184.99661 * 4 2 1 32 32 H 1.08996 * 109.47336 * 304.99997 * 4 2 1 33 33 H 1.09000 * 109.46763 * 60.00312 * 6 5 4 34 34 H 1.09000 * 109.46748 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46941 * 300.00187 * 6 5 4 36 36 H 0.97000 * 120.00590 * 359.97438 * 11 9 2 37 37 H 1.08998 * 109.47141 * 299.99588 * 12 11 9 38 38 H 1.08994 * 109.47463 * 60.00534 * 12 11 9 39 39 H 1.08995 * 109.68322 * 307.49020 * 15 13 12 40 40 H 1.08993 * 109.68227 * 68.04968 * 15 13 12 41 41 H 0.96994 * 119.99822 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.68119 * 69.18846 * 25 16 15 43 43 H 1.09004 * 109.68327 * 189.70032 * 25 16 15 44 44 H 1.09000 * 109.51068 * 172.22775 * 26 25 16 45 45 H 1.08999 * 109.50848 * 292.37775 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5601 0.2155 -2.7266 6 6 2.2552 -0.8022 -4.0578 7 8 0.1433 0.1965 -2.8342 8 8 2.2381 1.4642 -2.7109 9 6 2.0324 -0.7104 1.2305 10 8 2.7297 -1.6964 1.1192 11 7 1.7068 -0.2498 2.4546 12 6 2.1956 -0.9401 3.6508 13 6 1.6850 -0.2191 4.9000 14 1 1.9708 0.8318 4.8561 15 6 2.2962 -0.8642 6.1491 16 7 1.6501 -0.2813 7.3358 17 6 2.3954 0.2180 8.3704 18 1 3.3957 0.5824 8.1887 19 6 1.8653 0.2555 9.6528 20 7 0.8093 -0.4718 9.9500 21 14 2.6506 1.3383 10.9568 22 1 3.8163 2.0495 10.3732 23 1 1.6569 2.3298 11.4411 24 1 3.1033 0.4959 12.0927 25 6 0.1795 -0.2502 7.3776 26 6 -0.3285 0.3650 6.0686 27 8 0.2608 -0.3255 4.9641 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1264 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.8145 -1.7985 -4.0212 34 1 2.0329 -0.3421 -5.0206 35 1 3.3351 -0.8776 -3.9313 36 1 1.1495 0.5391 2.5436 37 1 1.8326 -1.9678 3.6510 38 1 3.2856 -0.9396 3.6507 39 1 2.1234 -1.9402 6.1285 40 1 3.3672 -0.6644 6.1788 41 1 0.4387 -0.4452 10.8459 42 1 -0.2063 -1.2644 7.4806 43 1 -0.1511 0.3557 8.2212 44 1 -1.4134 0.2717 6.0194 45 1 -0.0508 1.4183 6.0295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753658287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:30 Heat of formation + Delta-G solvation = -128.068348 kcal Electronic energy + Delta-G solvation = -27148.353357 eV Core-core repulsion = 23101.382930 eV Total energy + Delta-G solvation = -4046.970427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.08091 -38.54621 -37.40526 -36.49977 -35.11836 -34.88130 -34.34301 -31.60220 -30.72168 -30.19704 -28.00182 -27.45137 -25.78748 -23.74234 -23.16040 -21.77399 -20.40613 -19.54289 -19.28070 -17.93562 -17.02591 -16.72650 -16.51709 -16.31498 -16.06517 -15.85107 -15.35282 -15.03063 -14.47584 -14.28479 -14.18535 -13.83489 -13.70279 -13.67270 -13.41850 -13.23717 -13.08391 -13.05551 -12.76779 -12.42150 -12.37198 -12.05986 -11.90203 -11.68230 -11.57094 -11.47171 -11.17200 -10.99730 -10.90865 -10.75316 -10.45775 -10.29254 -10.03951 -9.90260 -9.68159 -9.12504 -9.06770 -8.59219 -6.80788 -5.88977 -3.32815 -0.47552 2.28231 2.51552 2.97324 3.28464 3.30791 3.38918 3.40893 3.57348 3.96984 4.16938 4.25156 4.31470 4.38846 4.50076 4.53062 4.82654 5.00120 5.07812 5.16124 5.21281 5.28659 5.42540 5.43984 5.47211 5.56890 5.74278 5.78648 5.91816 5.97555 6.09889 6.22998 6.31699 6.42982 6.44078 6.69514 7.05195 7.43907 7.47244 7.66542 7.79853 8.11993 8.28434 9.06525 9.69166 10.25752 11.19165 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.032586 B = 0.002051 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.046950 B =13647.322958 C =13817.620543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.112 0.888 4 C -0.592 4.592 5 S 2.419 3.581 6 C -0.656 4.656 7 O -0.934 6.934 8 O -0.939 6.939 9 C 0.523 3.477 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.130 3.870 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 0.659 -25.317 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.121 4.121 3 H 0.130 0.870 4 C -0.721 4.721 5 S 2.601 3.399 6 C -0.805 4.805 7 O -0.931 6.931 8 O -0.936 6.936 9 C 0.308 3.692 10 O -0.420 6.420 11 N -0.367 5.367 12 C 0.006 3.994 13 C 0.004 3.996 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.318 5.318 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.309 6.309 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.146 0.617 -25.398 25.406 hybrid contribution 0.710 0.137 1.146 1.356 sum 0.856 0.754 -24.252 24.279 Atomic orbital electron populations 1.22310 0.91267 1.04737 1.05255 1.20979 0.98615 1.00742 0.91726 0.86989 1.30208 1.12888 1.14356 1.14609 1.07885 0.76174 0.77231 0.78578 1.30247 1.14054 1.16752 1.19465 1.93590 1.27303 1.86873 1.85376 1.93614 1.76273 1.37788 1.85926 1.20157 0.80191 0.84563 0.84331 1.90690 1.38244 1.26296 1.86794 1.45932 1.53199 1.32153 1.05404 1.21456 0.98907 0.97074 0.81984 1.22809 0.82957 0.99024 0.94773 0.92286 1.21439 0.96591 0.95768 0.86759 1.44078 1.01368 1.69438 1.16900 1.19235 0.99189 1.33861 0.86179 0.91278 1.25061 0.98660 0.99009 0.96966 1.70042 1.25191 1.39548 1.19864 0.86175 0.78667 0.80112 0.81536 1.20196 1.21451 1.21614 1.21452 0.83655 0.99207 0.94370 1.23329 0.96754 0.95163 0.88560 1.87786 1.19008 1.75431 1.48680 0.90865 0.90521 0.88967 0.84071 0.84151 0.85140 0.85186 0.85192 0.76053 0.90563 0.90041 0.95235 0.91769 0.93507 0.95358 0.88731 0.89988 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.73 37.16 0.32 -1.18 16 2 C -0.10 -0.87 2.72 -91.77 -0.25 -1.12 16 3 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.59 -3.87 4.61 37.15 0.17 -3.70 16 5 S 2.42 14.87 5.15 -107.50 -0.55 14.32 16 6 C -0.66 -1.90 10.62 101.05 1.07 -0.82 16 7 O -0.93 -8.52 15.46 -57.83 -0.89 -9.41 16 8 O -0.94 -9.25 18.10 -57.83 -1.05 -10.30 16 9 C 0.52 6.40 7.15 -10.98 -0.08 6.32 16 10 O -0.54 -8.32 15.92 5.55 0.09 -8.23 16 11 N -0.72 -8.75 5.40 -60.29 -0.33 -9.07 16 12 C 0.13 1.85 5.34 -4.04 -0.02 1.83 16 13 C 0.06 1.08 2.81 -26.58 -0.07 1.00 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.12 2.47 6.02 -3.53 -0.02 2.45 16 16 N -0.59 -14.57 3.05 -171.83 -0.52 -15.09 16 17 C -0.26 -6.83 9.65 -15.06 -0.15 -6.98 16 18 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 19 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 20 N -0.90 -25.66 11.14 55.49 0.62 -25.04 16 21 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.14 3.24 5.45 -3.53 -0.02 3.22 16 26 C 0.04 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -7.01 10.33 -35.23 -0.36 -7.37 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 30 H 0.09 0.77 5.40 -51.93 -0.28 0.49 16 31 H 0.14 0.79 7.96 -51.92 -0.41 0.38 16 32 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.40 4.26 7.89 -40.82 -0.32 3.93 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -36.66 375.45 -8.43 -45.09 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.19 Total: 1.32 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 1.13 Total: 1.98 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.23 Total: -49.20 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -2.22 Total: -35.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 14.87 SS G_CDS: -0.55 Total: 14.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.66 -8.43 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753658287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.982 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds