Wall clock time and date at job start Tue Mar 31 2020 17:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47772 * 2 1 4 4 C 1.53000 * 109.47229 * 119.99932 * 2 1 3 5 5 S 1.81406 * 109.47008 * 295.00117 * 4 2 1 6 6 C 1.81401 * 101.92055 * 179.97438 * 5 4 2 7 7 O 1.42101 * 108.57619 * 294.48464 * 5 4 2 8 8 O 1.42094 * 108.58001 * 65.50867 * 5 4 2 9 9 C 1.50701 * 109.47076 * 239.99776 * 2 1 3 10 10 O 1.21284 * 119.99831 * 240.00328 * 9 2 1 11 11 N 1.34772 * 120.00033 * 59.72329 * 9 2 1 12 12 C 1.46500 * 120.00207 * 180.27427 * 11 9 2 13 13 C 1.52994 * 109.47298 * 180.02562 * 12 11 9 14 14 H 1.09005 * 109.51577 * 305.10406 * 13 12 11 15 15 C 1.53291 * 109.51606 * 185.00380 * 13 12 11 16 16 N 1.47149 * 108.38876 * 187.77672 * 15 13 12 17 17 C 1.36936 * 120.98180 * 230.55689 * 16 15 13 18 18 H 1.08009 * 119.99966 * 26.58014 * 17 16 15 19 19 C 1.38813 * 120.00171 * 206.58646 * 17 16 15 20 20 N 1.31611 * 119.99920 * 17.02194 * 19 17 16 21 21 Si 1.86799 * 120.00071 * 197.02221 * 19 17 16 22 22 H 1.48504 * 109.47068 * 94.14852 * 21 19 17 23 23 H 1.48498 * 109.47441 * 214.14771 * 21 19 17 24 24 H 1.48504 * 109.47209 * 334.15311 * 21 19 17 25 25 C 1.47148 * 118.03883 * 50.52927 * 16 15 13 26 26 C 1.53293 * 108.38519 * 309.46998 * 25 16 15 27 27 O 1.42960 * 109.51336 * 65.25373 * 13 12 11 28 28 H 1.08993 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47052 * 300.00578 * 1 2 3 30 30 H 1.08998 * 109.47202 * 59.99771 * 1 2 3 31 31 H 1.09004 * 109.46715 * 54.99375 * 4 2 1 32 32 H 1.08998 * 109.47874 * 174.99841 * 4 2 1 33 33 H 1.09003 * 109.46966 * 59.99966 * 6 5 4 34 34 H 1.09000 * 109.47016 * 179.97438 * 6 5 4 35 35 H 1.08991 * 109.47284 * 299.99623 * 6 5 4 36 36 H 0.96998 * 120.00048 * 0.28064 * 11 9 2 37 37 H 1.09004 * 109.46886 * 300.00558 * 12 11 9 38 38 H 1.08999 * 109.46719 * 60.00687 * 12 11 9 39 39 H 1.09004 * 109.67835 * 307.49691 * 15 13 12 40 40 H 1.09000 * 109.68281 * 68.04621 * 15 13 12 41 41 H 0.97000 * 120.00137 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.68288 * 69.19091 * 25 16 15 43 43 H 1.08995 * 109.68516 * 189.70601 * 25 16 15 44 44 H 1.09001 * 109.51329 * 172.22577 * 26 25 16 45 45 H 1.08998 * 109.51184 * 292.37727 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 1.5601 0.2157 2.7266 6 6 2.2538 -0.8027 4.0579 7 8 2.2381 1.4644 2.7109 8 8 0.1433 0.1968 2.8343 9 6 2.0323 -0.7105 -1.2304 10 8 2.7295 -1.6966 -1.1191 11 7 1.7021 -0.2533 -2.4545 12 6 2.1855 -0.9475 -3.6507 13 6 1.6714 -0.2292 -4.8999 14 1 0.5854 -0.1480 -4.8523 15 6 2.0711 -1.0237 -6.1484 16 7 1.7326 -0.2235 -7.3360 17 6 1.0096 -0.7625 -8.3664 18 1 0.3288 -1.5798 -8.1790 19 6 1.1516 -0.2585 -9.6520 20 7 2.1935 0.4862 -9.9555 21 14 -0.1361 -0.6371 -10.9512 22 1 -1.1349 0.4610 -10.9930 23 1 0.5202 -0.7600 -12.2777 24 1 -0.8174 -1.9133 -10.6158 25 6 2.1934 1.1732 -7.3833 26 6 1.7877 1.8607 -6.0746 27 8 2.2463 1.0779 -4.9697 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 3.3338 -0.8789 3.9319 34 1 2.0323 -0.3422 5.0207 35 1 1.8126 -1.7986 4.0211 36 1 1.1445 0.5353 -2.5436 37 1 3.2755 -0.9480 -3.6549 38 1 1.8216 -1.9749 -3.6464 39 1 3.1433 -1.2196 -6.1312 40 1 1.5255 -1.9670 -6.1735 41 1 2.2926 0.8387 -10.8538 42 1 3.2779 1.1985 -7.4904 43 1 1.7293 1.6845 -8.2265 44 1 2.2376 2.8525 -6.0298 45 1 0.7023 1.9503 -6.0317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753658290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:41 Heat of formation + Delta-G solvation = -128.226714 kcal Electronic energy + Delta-G solvation = -27132.637360 eV Core-core repulsion = 23085.660066 eV Total energy + Delta-G solvation = -4046.977294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.08372 -38.54635 -37.40584 -36.49989 -35.12067 -34.88711 -34.34166 -31.60137 -30.72620 -30.19819 -28.00921 -27.46216 -25.78911 -23.74431 -23.16255 -21.77536 -20.39978 -19.55438 -19.28106 -17.93496 -17.02885 -16.71467 -16.52251 -16.32794 -16.07072 -15.82111 -15.36790 -15.03008 -14.55333 -14.32637 -14.04530 -13.85333 -13.69889 -13.67965 -13.42724 -13.24247 -13.17849 -13.00095 -12.76746 -12.42135 -12.37175 -12.07150 -11.92892 -11.67781 -11.58172 -11.47357 -11.16895 -10.99946 -10.90047 -10.77042 -10.45987 -10.29216 -10.04199 -9.90474 -9.68324 -9.12196 -9.06828 -8.59034 -6.80596 -5.88923 -3.33154 -0.47591 2.28181 2.51754 2.97182 3.28267 3.31329 3.38639 3.40059 3.57306 3.96489 4.17154 4.24709 4.31466 4.38821 4.49647 4.52495 4.81601 5.00930 5.07415 5.15976 5.19245 5.28485 5.40849 5.42259 5.46484 5.54961 5.74202 5.78724 5.87028 5.97571 6.09936 6.22984 6.31789 6.43026 6.44120 6.69684 7.04861 7.43882 7.46940 7.66496 7.79880 8.12001 8.28643 9.06515 9.69103 10.25956 11.19218 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.002043 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.859922 B =13702.186105 C =13769.157189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.113 0.887 4 C -0.592 4.592 5 S 2.419 3.581 6 C -0.656 4.656 7 O -0.938 6.938 8 O -0.935 6.935 9 C 0.523 3.477 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.130 3.870 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 -0.695 25.318 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.121 4.121 3 H 0.131 0.869 4 C -0.721 4.721 5 S 2.601 3.399 6 C -0.805 4.805 7 O -0.935 6.935 8 O -0.932 6.932 9 C 0.308 3.692 10 O -0.420 6.420 11 N -0.367 5.367 12 C 0.006 3.994 13 C 0.004 3.996 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.309 6.309 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.436 -0.501 25.394 25.439 hybrid contribution -0.439 -0.657 -1.136 1.384 sum -1.874 -1.158 24.258 24.358 Atomic orbital electron populations 1.22310 0.91393 1.04613 1.05251 1.20980 0.98484 1.00898 0.91743 0.86881 1.30209 1.12950 1.14297 1.14604 1.07885 0.76166 0.77240 0.78575 1.30247 1.14074 1.16732 1.19469 1.93619 1.76248 1.37745 1.85899 1.93586 1.27344 1.86893 1.85394 1.20149 0.80183 0.84568 0.84325 1.90690 1.38133 1.26408 1.86793 1.45930 1.53290 1.32059 1.05403 1.21454 1.00447 0.95542 0.81977 1.22808 0.96794 0.85183 0.94776 0.92294 1.21439 0.98262 0.94102 0.86742 1.44065 1.63369 1.07242 1.17083 1.19208 1.15937 1.17281 0.86167 0.91310 1.25065 0.97045 1.00563 0.96959 1.70035 1.26611 1.38219 1.19716 0.86217 0.81035 0.78134 0.81030 1.21371 1.21665 1.20314 1.21439 0.97790 0.85089 0.94327 1.23330 0.97977 0.93958 0.88540 1.87789 1.68793 1.25583 1.48756 0.90899 0.88905 0.90666 0.84180 0.84036 0.85178 0.85183 0.85152 0.76054 0.90555 0.90043 0.95230 0.91773 0.93458 0.95329 0.88829 0.89976 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.72 37.16 0.32 -1.10 16 2 C -0.10 -0.87 2.72 -91.77 -0.25 -1.12 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.59 -3.87 4.61 37.16 0.17 -3.70 16 5 S 2.42 14.90 5.15 -107.50 -0.55 14.34 16 6 C -0.66 -1.90 10.62 101.05 1.07 -0.83 16 7 O -0.94 -9.38 18.10 -57.83 -1.05 -10.43 16 8 O -0.94 -8.42 15.46 -57.83 -0.89 -9.31 16 9 C 0.52 6.40 7.16 -10.99 -0.08 6.32 16 10 O -0.54 -8.32 15.92 5.55 0.09 -8.23 16 11 N -0.72 -8.75 5.40 -60.30 -0.33 -9.08 16 12 C 0.13 1.86 5.34 -4.04 -0.02 1.83 16 13 C 0.06 1.08 2.81 -26.58 -0.07 1.00 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.12 2.47 6.02 -3.54 -0.02 2.45 16 16 N -0.59 -14.57 3.05 -171.83 -0.52 -15.09 16 17 C -0.26 -6.86 9.64 -15.06 -0.15 -7.01 16 18 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 20 N -0.90 -25.66 11.17 55.49 0.62 -25.04 16 21 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.14 3.25 5.44 -3.54 -0.02 3.23 16 26 C 0.04 0.74 6.99 37.31 0.26 1.00 16 27 O -0.39 -7.06 10.33 -35.23 -0.36 -7.42 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.75 5.40 -51.92 -0.28 0.47 16 30 H 0.07 0.53 7.55 -51.93 -0.39 0.14 16 31 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.14 0.82 7.95 -51.92 -0.41 0.40 16 33 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.40 4.26 7.88 -40.82 -0.32 3.94 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -36.69 375.48 -8.42 -45.11 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.19 Total: 1.25 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 1.13 Total: 2.08 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.23 Total: -49.21 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.22 Total: -35.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 14.90 SS G_CDS: -0.55 Total: 14.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.69 -8.42 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753658290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.112 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds