Wall clock time and date at job start Tue Mar 31 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00158 * 2 1 4 4 C 1.53005 * 109.47243 * 269.99987 * 3 2 1 5 5 C 1.52997 * 109.47064 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.46811 * 180.02562 * 5 4 3 7 7 C 1.36934 * 119.99835 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99805 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99893 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47657 * 60.00391 * 11 9 7 13 13 H 1.48501 * 109.46894 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47293 * 299.99894 * 11 9 7 15 15 C 1.34780 * 119.99668 * 180.02562 * 2 1 3 16 16 O 1.21601 * 119.99851 * 183.97436 * 15 2 1 17 17 C 1.47427 * 120.00077 * 3.97178 * 15 2 1 18 18 C 1.38046 * 126.41403 * 330.40348 * 17 15 2 19 19 N 1.34266 * 107.41730 * 179.86976 * 18 17 15 20 20 C 1.46490 * 125.75553 * 180.14335 * 19 18 17 21 21 N 1.39935 * 108.48660 * 0.39390 * 19 18 17 22 22 C 1.30445 * 108.90280 * 359.75005 * 21 19 18 23 23 C 1.50699 * 125.99177 * 180.02562 * 22 21 19 24 24 F 1.39895 * 109.47297 * 269.97710 * 23 22 21 25 25 F 1.39906 * 109.46782 * 29.97935 * 23 22 21 26 26 F 1.39901 * 109.46919 * 149.97486 * 23 22 21 27 27 H 1.09005 * 109.47326 * 275.90921 * 1 2 3 28 28 H 1.09005 * 109.47266 * 35.90903 * 1 2 3 29 29 H 1.08996 * 109.47884 * 155.90838 * 1 2 3 30 30 H 1.08990 * 109.47121 * 30.00006 * 3 2 1 31 31 H 1.09001 * 109.47033 * 150.00567 * 3 2 1 32 32 H 1.08998 * 109.47310 * 300.00652 * 4 3 2 33 33 H 1.09001 * 109.46633 * 60.00334 * 4 3 2 34 34 H 1.08998 * 109.47048 * 299.99708 * 5 4 3 35 35 H 1.09001 * 109.47121 * 60.00635 * 5 4 3 36 36 H 0.97003 * 120.00057 * 359.97438 * 6 5 4 37 37 H 0.97002 * 119.99701 * 179.97438 * 10 9 7 38 38 H 1.08002 * 126.29523 * 0.02562 * 18 17 15 39 39 H 1.08998 * 109.47618 * 270.26661 * 20 19 18 40 40 H 1.09003 * 109.47210 * 30.26596 * 20 19 18 41 41 H 1.09000 * 109.47156 * 150.26691 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4425 6 7 3.4607 3.4589 -2.8238 7 6 4.1337 4.6248 -3.0740 8 1 4.4846 5.2326 -2.2531 9 6 4.3651 5.0256 -4.3827 10 7 3.9370 4.2851 -5.3831 11 14 5.2826 6.6165 -4.7240 12 1 6.6400 6.5432 -4.1261 13 1 5.3976 6.8167 -6.1909 14 1 4.5393 7.7547 -4.1263 15 6 2.1388 -1.1673 -0.0005 16 8 3.3527 -1.1686 0.0725 17 6 1.4043 -2.4424 -0.0895 18 6 0.1276 -2.6868 0.3751 19 7 -0.1644 -3.9668 0.0936 20 6 -1.4229 -4.6470 0.4091 21 7 0.9384 -4.5429 -0.5467 22 6 1.8775 -3.6449 -0.6609 23 6 3.2300 -3.8531 -1.2922 24 9 4.1385 -4.2806 -0.3180 25 9 3.1318 -4.8228 -2.2959 26 9 3.6751 -2.6493 -1.8488 27 1 -0.3634 0.1058 1.0222 28 1 -0.3634 0.8324 -0.6027 29 1 -0.3635 -0.9381 -0.4195 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0415 0.9507 -1.9564 33 1 1.5001 1.8408 -1.9563 34 1 2.6275 3.7951 -0.9288 35 1 4.1695 2.9057 -0.9286 36 1 3.1458 2.9128 -3.5611 37 1 4.0984 4.5654 -6.2976 38 1 -0.5188 -1.9780 0.8714 39 1 -1.3535 -5.0991 1.3985 40 1 -2.2394 -3.9250 0.3960 41 1 -1.6122 -5.4231 -0.3325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754399557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:13 Heat of formation + Delta-G solvation = -74.765285 kcal Electronic energy + Delta-G solvation = -29223.030866 eV Core-core repulsion = 24533.363893 eV Total energy + Delta-G solvation = -4689.666973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.12384 -47.68264 -47.57039 -42.18597 -39.54094 -36.18025 -34.85340 -34.33345 -32.54738 -31.18743 -29.53845 -28.81447 -27.22577 -26.16856 -25.00014 -23.14862 -22.28493 -21.42723 -20.87389 -19.92889 -18.53798 -18.27128 -17.97548 -17.29990 -16.99374 -16.57360 -16.29074 -15.98238 -15.28057 -14.69213 -14.55816 -14.49936 -14.41599 -14.21035 -14.01694 -13.78026 -13.73272 -13.70266 -13.47999 -13.40629 -13.19553 -13.06941 -12.95740 -12.56169 -12.28464 -11.95293 -11.86371 -11.58610 -10.87676 -10.78688 -10.70286 -10.35582 -10.33160 -10.09520 -9.95485 -9.65301 -9.31200 -8.79776 -8.68889 -6.84704 -5.69142 -2.97721 0.89352 1.26962 1.42146 2.51023 2.79807 3.08955 3.42482 3.49306 3.53163 3.54671 3.70443 4.04683 4.19583 4.30752 4.43250 4.47389 4.65758 4.69492 4.76269 4.79928 4.89688 5.04920 5.24161 5.36514 5.39681 5.47442 5.63178 5.74548 5.94821 6.05105 6.14054 6.35705 6.45421 6.53368 6.66411 6.93206 6.95313 7.27925 7.75918 8.12118 8.49849 9.60460 10.19598 10.54145 11.53934 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002679 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.174944 B =10450.006326 C =11350.998987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.608 5.608 3 C 0.121 3.879 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.584 3.416 16 O -0.516 6.516 17 C -0.240 4.240 18 C 0.095 3.905 19 N -0.346 5.346 20 C 0.092 3.908 21 N -0.239 5.239 22 C 0.036 3.964 23 C 0.556 3.444 24 F -0.163 7.163 25 F -0.171 7.171 26 F -0.146 7.146 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.021 0.979 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.204 0.796 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 -20.415 15.966 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.341 5.341 3 C -0.001 4.001 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.371 3.629 16 O -0.391 6.391 17 C -0.255 4.255 18 C -0.054 4.054 19 N -0.127 5.127 20 C -0.048 4.048 21 N -0.062 5.062 22 C -0.133 4.133 23 C 0.499 3.501 24 F -0.145 7.145 25 F -0.152 7.152 26 F -0.127 7.127 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.221 0.779 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.964 -21.540 15.812 31.127 hybrid contribution 0.494 1.449 -0.447 1.595 sum -15.470 -20.092 15.364 29.649 Atomic orbital electron populations 1.22254 0.80339 1.03971 1.01662 1.47633 1.06688 1.06092 1.73654 1.21522 0.97610 0.82777 0.98158 1.22072 1.01132 0.99090 0.95629 1.20535 0.96074 0.91799 0.88718 1.42351 1.68359 1.25916 1.01127 1.19203 1.27861 0.98135 0.91771 0.91211 1.24753 1.01772 0.99055 0.95579 1.69659 1.51561 1.38959 0.98159 0.86247 0.79738 0.83273 0.76817 1.21242 1.21714 1.21322 1.17158 0.86709 0.82139 0.76941 1.90866 1.12847 1.86708 1.48685 1.20120 0.96079 0.95825 1.13515 1.23632 0.95986 0.87058 0.98709 1.48474 1.13040 1.08447 1.42699 1.22189 0.79890 0.99293 1.03431 1.77171 0.93724 1.20086 1.15237 1.22145 0.95237 0.93121 1.02794 1.16758 0.82380 0.74819 0.76121 1.93244 1.68680 1.89803 1.62750 1.93232 1.96271 1.63830 1.61888 1.93352 1.89794 1.44318 1.85209 0.92252 0.90342 0.90519 0.90309 0.89342 0.91387 0.92030 0.96449 0.96134 0.78303 0.93508 0.77926 0.89481 0.88218 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 9.07 59.85 0.54 0.96 16 2 N -0.61 -7.17 2.87 -182.85 -0.53 -7.70 16 3 C 0.12 1.63 5.46 -4.04 -0.02 1.61 16 4 C -0.14 -2.41 5.65 -26.73 -0.15 -2.56 16 5 C 0.16 3.29 6.26 -4.04 -0.03 3.27 16 6 N -0.73 -19.65 5.60 -59.91 -0.34 -19.98 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 11 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.58 8.31 7.08 -12.52 -0.09 8.22 16 16 O -0.52 -9.42 14.32 5.28 0.08 -9.34 16 17 C -0.24 -2.82 5.59 -105.07 -0.59 -3.41 16 18 C 0.10 0.66 9.09 -16.56 -0.15 0.51 16 19 N -0.35 -2.47 3.98 -67.60 -0.27 -2.74 16 20 C 0.09 0.17 11.44 59.84 0.68 0.85 16 21 N -0.24 -2.72 12.43 33.89 0.42 -2.29 16 22 C 0.04 0.47 6.60 -82.02 -0.54 -0.07 16 23 C 0.56 8.14 3.27 36.01 0.12 8.26 16 24 F -0.16 -2.44 17.30 2.25 0.04 -2.40 16 25 F -0.17 -2.38 17.25 2.25 0.04 -2.34 16 26 F -0.15 -2.47 14.57 2.25 0.03 -2.44 16 27 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 28 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.08 0.42 4.54 -51.93 -0.24 0.19 16 30 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.09 1.32 7.37 -51.93 -0.38 0.93 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.38 10.82 7.67 -40.82 -0.31 10.50 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.20 0.51 5.86 -52.49 -0.31 0.21 16 39 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 41 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -38.51 359.93 -4.86 -43.37 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.99 Total: 1.02 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.47 Total: 9.96 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.02 Total: -61.28 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.51 -4.86 -43.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754399557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.398 kcal (2) G-P(sol) polarization free energy of solvation -38.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds