Wall clock time and date at job start Tue Mar 31 2020 18:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48493 * 109.47285 * 240.00294 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47118 * 119.99716 * 3 2 1 7 7 C 1.38795 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00343 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00172 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47452 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00446 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00288 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47062 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.47476 * 294.99688 * 15 14 13 17 17 C 1.50707 * 109.47093 * 175.00193 * 15 14 13 18 18 C 1.38233 * 120.00024 * 142.49062 * 17 15 14 19 19 C 1.38234 * 119.99897 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00098 * 359.97438 * 19 18 17 21 21 C 1.38233 * 119.99808 * 0.27435 * 20 19 18 22 22 C 1.38231 * 120.00184 * 359.51216 * 21 20 19 23 23 N 1.46899 * 109.47386 * 55.00201 * 15 14 13 24 24 C 1.48536 * 111.00216 * 67.60493 * 23 15 14 25 25 C 1.54936 * 103.22678 * 159.72069 * 24 23 15 26 26 C 1.54595 * 102.92360 * 322.58769 * 25 24 23 27 27 C 1.47903 * 111.00015 * 185.00289 * 23 15 14 28 28 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47215 * 60.00136 * 10 9 7 30 30 H 1.09000 * 109.47165 * 299.99869 * 10 9 7 31 31 H 0.97001 * 119.99587 * 0.02562 * 13 11 10 32 32 H 1.08993 * 109.46917 * 60.00321 * 14 13 11 33 33 H 1.09000 * 109.46867 * 300.00417 * 14 13 11 34 34 H 1.08000 * 120.00071 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.00119 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00132 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.00338 * 179.72524 * 21 20 19 38 38 H 1.07997 * 120.00398 * 180.27623 * 22 21 20 39 39 H 1.08995 * 110.66899 * 278.16155 * 24 23 15 40 40 H 1.09006 * 110.66532 * 41.29027 * 24 23 15 41 41 H 1.08997 * 110.72481 * 204.23032 * 25 24 23 42 42 H 1.09002 * 110.72074 * 80.94736 * 25 24 23 43 43 H 1.09004 * 110.31206 * 263.04059 * 26 25 24 44 44 H 1.09002 * 110.30931 * 140.86980 * 26 25 24 45 45 H 1.08997 * 109.91702 * 333.50645 * 27 23 15 46 46 H 1.09004 * 109.91462 * 94.80356 * 27 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0018 14 6 2.3305 -7.7151 -0.0030 15 6 3.5025 -8.6985 -0.0029 16 1 4.0606 -8.5988 -0.9339 17 6 2.9774 -10.1058 0.1197 18 6 3.5848 -11.1333 -0.5775 19 6 3.1035 -12.4242 -0.4646 20 6 2.0152 -12.6877 0.3458 21 6 1.4046 -11.6593 1.0390 22 6 1.8886 -10.3691 0.9296 23 7 4.3875 -8.4054 1.1324 24 6 3.7160 -8.7068 2.4225 25 6 4.8991 -8.8549 3.4119 26 6 5.9775 -9.5606 2.5581 27 6 5.5949 -9.2589 1.0973 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.8010 -6.1834 -0.0015 32 1 1.7221 -7.8744 -0.8932 33 1 1.7216 -7.8758 0.8867 34 1 4.4354 -10.9275 -1.2104 35 1 3.5778 -13.2269 -1.0097 36 1 1.6394 -13.6963 0.4344 37 1 0.5515 -11.8644 1.6688 38 1 1.4143 -9.5664 1.4747 39 1 3.0666 -7.8835 2.7198 40 1 3.1524 -9.6374 2.3547 41 1 4.6150 -9.4738 4.2630 42 1 5.2487 -7.8774 3.7441 43 1 5.9603 -10.6353 2.7395 44 1 6.9636 -9.1540 2.7826 45 1 5.3776 -10.1882 0.5708 46 1 6.4092 -8.7300 0.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046024550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:11 Heat of formation + Delta-G solvation = -2.018663 kcal Electronic energy + Delta-G solvation = -26112.427243 eV Core-core repulsion = 22514.064755 eV Total energy + Delta-G solvation = -3598.362488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87602 -38.89407 -38.24856 -35.17354 -32.97583 -32.38022 -31.47522 -30.32387 -29.63863 -29.01868 -27.14353 -25.42695 -23.96830 -22.80642 -22.08052 -20.97247 -20.23884 -20.15814 -17.82858 -17.17323 -16.76521 -16.32836 -16.01931 -15.84202 -15.43391 -14.97324 -14.76397 -14.70410 -14.36799 -14.08026 -13.82914 -13.64769 -13.24667 -13.16751 -13.00961 -12.81089 -12.49486 -12.41115 -11.94373 -11.73323 -11.62858 -11.57731 -11.49571 -11.29328 -11.01841 -10.99832 -10.99105 -10.80352 -10.72517 -9.77304 -9.33012 -9.21497 -9.07983 -9.01649 -8.77870 -8.62976 -8.17399 -6.43982 -6.16887 -3.86734 0.96301 1.05046 3.10619 3.22131 3.26886 3.30517 3.33626 3.42128 3.69030 3.86814 4.25398 4.29920 4.37474 4.48606 4.54231 4.66685 4.70065 4.78696 4.84645 5.01393 5.07449 5.14046 5.18015 5.21200 5.28129 5.31872 5.42838 5.53550 5.58967 5.60820 5.63953 5.68876 5.70668 5.74500 5.85622 5.87971 5.94359 5.99555 6.10197 6.18246 6.20619 6.23994 6.60062 6.62791 6.65092 6.82259 7.64111 7.91039 8.39987 8.75300 9.28287 10.90501 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.002389 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.161743 B =11715.377072 C =12520.781622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.524 6.524 13 N -0.726 5.726 14 C 0.135 3.865 15 C 0.102 3.898 16 H 0.097 0.903 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.105 4.105 23 N -0.497 5.497 24 C 0.017 3.983 25 C -0.123 4.123 26 C -0.129 4.129 27 C 0.028 3.972 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.405 0.595 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 -27.146 2.796 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.399 6.399 13 N -0.380 5.380 14 C 0.010 3.990 15 C -0.007 4.007 16 H 0.115 0.885 17 C -0.115 4.115 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.123 4.123 23 N -0.220 5.220 24 C -0.110 4.110 25 C -0.161 4.161 26 C -0.167 4.167 27 C -0.100 4.100 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.240 0.760 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.836 -26.786 2.746 28.666 hybrid contribution 2.212 0.374 0.002 2.244 sum 12.048 -26.411 2.748 29.159 Atomic orbital electron populations 1.70015 1.05936 1.27477 1.46963 1.24987 0.95021 0.98986 0.94620 0.86234 0.79232 0.81299 0.78787 1.19958 1.20859 1.19958 1.22835 0.94885 0.91727 1.58809 0.91004 1.85366 1.05149 0.96277 1.96710 1.23503 1.06356 0.95424 1.04877 1.20287 0.86485 0.86315 0.75248 1.90693 1.15463 1.85678 1.48069 1.45803 1.10378 1.04662 1.77194 1.21257 0.94314 0.81027 1.02378 1.21111 0.94094 0.89440 0.96072 0.88489 1.20340 0.96673 0.96216 0.98268 1.21044 0.99691 0.92671 0.99123 1.21134 0.97085 0.96655 0.99139 1.21187 0.96208 0.99189 0.96997 1.21194 0.99908 0.92887 0.99796 1.21213 0.95666 0.97230 0.98203 1.65145 1.04961 1.50299 1.01585 1.23611 0.97087 1.01327 0.88990 1.22454 0.95088 1.01133 0.97396 1.22356 0.99556 1.00265 0.94502 1.22956 0.93482 0.96271 0.97294 0.92192 0.89255 0.89355 0.76028 0.91139 0.91588 0.86092 0.86085 0.86131 0.85864 0.85413 0.89729 0.91873 0.91276 0.90657 0.91841 0.91101 0.92899 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 12 O -0.52 -12.16 15.86 5.55 0.09 -12.07 16 13 N -0.73 -10.21 5.39 -60.30 -0.32 -10.53 16 14 C 0.14 1.65 4.59 -4.04 -0.02 1.63 16 15 C 0.10 0.94 2.22 -68.86 -0.15 0.79 16 16 H 0.10 0.84 8.02 -51.93 -0.42 0.43 16 17 C -0.11 -1.00 3.87 -104.62 -0.40 -1.40 16 18 C -0.11 -0.84 8.03 -39.58 -0.32 -1.16 16 19 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 20 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 21 C -0.12 -0.98 10.05 -39.59 -0.40 -1.37 16 22 C -0.10 -0.95 6.66 -39.58 -0.26 -1.22 16 23 N -0.50 -4.53 4.71 -223.88 -1.05 -5.58 16 24 C 0.02 0.16 5.07 -1.90 -0.01 0.15 16 25 C -0.12 -0.99 7.06 -24.87 -0.18 -1.17 16 26 C -0.13 -0.93 6.93 -25.37 -0.18 -1.11 16 27 C 0.03 0.21 6.47 -2.75 -0.02 0.20 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.40 4.89 8.14 -40.82 -0.33 4.56 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.86 5.55 -51.93 -0.29 0.57 16 34 H 0.12 0.78 7.81 -52.49 -0.41 0.37 16 35 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 1.19 5.72 -52.49 -0.30 0.89 16 39 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 40 H 0.06 0.58 4.38 -51.93 -0.23 0.35 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.40 5.25 -51.93 -0.27 0.12 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -34.20 378.80 -11.33 -45.53 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.85 Total: 3.15 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.40 Total: -13.15 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.64 Total: -41.89 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.20 -11.33 -45.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.513 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds