Wall clock time and date at job start Tue Mar 31 2020 18:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48493 * 109.47285 * 240.00294 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47118 * 119.99716 * 3 2 1 7 7 C 1.38795 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00343 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00172 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47452 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00446 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00288 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47062 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.47476 * 294.99688 * 15 14 13 17 17 C 1.50707 * 109.47093 * 175.00193 * 15 14 13 18 18 C 1.38233 * 120.00024 * 142.49062 * 17 15 14 19 19 C 1.38234 * 119.99897 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00098 * 359.97438 * 19 18 17 21 21 C 1.38233 * 119.99808 * 0.27435 * 20 19 18 22 22 C 1.38231 * 120.00184 * 359.51216 * 21 20 19 23 23 N 1.46899 * 109.47386 * 55.00201 * 15 14 13 24 24 C 1.48536 * 111.00216 * 67.60493 * 23 15 14 25 25 C 1.54936 * 103.22678 * 159.72069 * 24 23 15 26 26 C 1.54595 * 102.92360 * 322.58769 * 25 24 23 27 27 C 1.47903 * 111.00015 * 185.00289 * 23 15 14 28 28 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47215 * 60.00136 * 10 9 7 30 30 H 1.09000 * 109.47165 * 299.99869 * 10 9 7 31 31 H 0.97001 * 119.99587 * 0.02562 * 13 11 10 32 32 H 1.08993 * 109.46917 * 60.00321 * 14 13 11 33 33 H 1.09000 * 109.46867 * 300.00417 * 14 13 11 34 34 H 1.08000 * 120.00071 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.00119 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00132 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.00338 * 179.72524 * 21 20 19 38 38 H 1.07997 * 120.00398 * 180.27623 * 22 21 20 39 39 H 1.08995 * 110.66899 * 278.16155 * 24 23 15 40 40 H 1.09006 * 110.66532 * 41.29027 * 24 23 15 41 41 H 1.08997 * 110.72481 * 204.23032 * 25 24 23 42 42 H 1.09002 * 110.72074 * 80.94736 * 25 24 23 43 43 H 1.09004 * 110.31206 * 263.04059 * 26 25 24 44 44 H 1.09002 * 110.30931 * 140.86980 * 26 25 24 45 45 H 1.08997 * 109.91702 * 333.50645 * 27 23 15 46 46 H 1.09004 * 109.91462 * 94.80356 * 27 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0018 14 6 2.3305 -7.7151 -0.0030 15 6 3.5025 -8.6985 -0.0029 16 1 4.0606 -8.5988 -0.9339 17 6 2.9774 -10.1058 0.1197 18 6 3.5848 -11.1333 -0.5775 19 6 3.1035 -12.4242 -0.4646 20 6 2.0152 -12.6877 0.3458 21 6 1.4046 -11.6593 1.0390 22 6 1.8886 -10.3691 0.9296 23 7 4.3875 -8.4054 1.1324 24 6 3.7160 -8.7068 2.4225 25 6 4.8991 -8.8549 3.4119 26 6 5.9775 -9.5606 2.5581 27 6 5.5949 -9.2589 1.0973 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.8010 -6.1834 -0.0015 32 1 1.7221 -7.8744 -0.8932 33 1 1.7216 -7.8758 0.8867 34 1 4.4354 -10.9275 -1.2104 35 1 3.5778 -13.2269 -1.0097 36 1 1.6394 -13.6963 0.4344 37 1 0.5515 -11.8644 1.6688 38 1 1.4143 -9.5664 1.4747 39 1 3.0666 -7.8835 2.7198 40 1 3.1524 -9.6374 2.3547 41 1 4.6150 -9.4738 4.2630 42 1 5.2487 -7.8774 3.7441 43 1 5.9603 -10.6353 2.7395 44 1 6.9636 -9.1540 2.7826 45 1 5.3776 -10.1882 0.5708 46 1 6.4092 -8.7300 0.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046024550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:10 Heat of formation + Delta-G solvation = -24.413786 kcal Electronic energy + Delta-G solvation = -26113.398368 eV Core-core repulsion = 22514.064755 eV Total energy + Delta-G solvation = -3599.333613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62118 -40.32728 -38.90993 -36.24864 -34.57321 -34.01803 -32.09023 -31.16932 -30.89978 -29.69700 -28.24197 -27.57537 -24.77831 -23.48972 -22.75319 -21.63620 -21.58604 -20.97532 -19.80907 -18.07300 -17.65415 -17.45396 -17.12459 -16.86714 -16.67285 -16.45241 -16.13963 -15.75344 -15.48155 -15.08611 -14.74344 -14.64880 -14.41379 -14.30505 -14.09948 -13.86094 -13.59573 -13.34065 -13.15521 -13.05886 -12.85520 -12.62405 -12.44495 -12.36825 -12.27258 -12.13403 -12.00858 -11.75308 -11.69676 -11.41447 -11.11711 -10.94778 -10.26387 -10.06113 -9.81858 -9.71784 -9.38539 -8.65082 -8.33153 -6.11153 0.34844 0.44890 1.28333 1.44829 1.47821 1.58065 1.65779 2.27579 2.32778 2.79427 3.00628 3.01901 3.34706 3.55328 3.68675 3.79877 3.92782 4.00119 4.07320 4.10202 4.16740 4.22996 4.26539 4.33509 4.42682 4.53717 4.55806 4.61273 4.62068 4.68700 4.80930 4.86367 4.93863 4.98056 5.02763 5.08763 5.11060 5.19786 5.32201 5.42790 5.44497 5.52968 5.57420 5.59858 5.91089 5.99413 6.05998 6.21111 6.59111 7.07809 7.29998 8.75890 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.002389 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.161743 B =11715.377072 C =12520.781622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.570 6.570 13 N -0.699 5.699 14 C 0.136 3.864 15 C 0.114 3.886 16 H 0.110 0.890 17 C -0.121 4.121 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.120 4.120 23 N -0.505 5.505 24 C 0.017 3.983 25 C -0.122 4.122 26 C -0.124 4.124 27 C 0.028 3.972 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.801 -28.376 2.423 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.278 4.278 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.352 5.352 14 C 0.012 3.988 15 C 0.005 3.995 16 H 0.128 0.872 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.139 4.139 23 N -0.228 5.228 24 C -0.110 4.110 25 C -0.160 4.160 26 C -0.162 4.162 27 C -0.099 4.099 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.839 -28.056 2.374 30.946 hybrid contribution 1.309 0.591 0.130 1.442 sum 14.148 -27.466 2.503 30.997 Atomic orbital electron populations 1.70184 1.07974 1.28646 1.48021 1.26140 0.95984 1.03336 0.93757 0.85001 0.77801 0.75657 0.79515 1.18615 1.20370 1.18666 1.23171 0.95336 0.92025 1.58874 0.89967 1.85548 1.10607 0.99178 1.97039 1.23336 1.03429 0.94398 1.06608 1.20055 0.86181 0.86692 0.75261 1.90683 1.17425 1.86148 1.50683 1.45549 1.10441 1.04462 1.74746 1.21345 0.95698 0.80305 1.01477 1.20948 0.92944 0.88854 0.96747 0.87241 1.20284 0.97027 0.96082 0.98944 1.21248 1.00050 0.92612 0.98895 1.21454 0.96845 0.97072 0.98832 1.21486 0.96079 0.99903 0.96420 1.21393 1.00416 0.92787 1.00263 1.21216 0.96313 0.97501 0.98870 1.65124 1.05367 1.51042 1.01265 1.23547 0.97346 1.00499 0.89630 1.22446 0.94913 1.01099 0.97545 1.22345 0.99458 1.00588 0.93852 1.23007 0.92770 0.96362 0.97797 0.92006 0.87511 0.87348 0.74421 0.92083 0.92573 0.84455 0.83838 0.84141 0.84968 0.86694 0.91924 0.91739 0.90544 0.91390 0.91163 0.90307 0.92287 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 11 C 0.53 20.60 7.85 87.66 0.69 21.29 16 12 O -0.57 -27.40 15.86 -3.05 -0.05 -27.45 16 13 N -0.70 -19.21 5.39 -463.08 -2.49 -21.71 16 14 C 0.14 3.33 4.59 86.38 0.40 3.73 16 15 C 0.11 1.97 2.22 44.17 0.10 2.07 16 16 H 0.11 1.65 8.02 -2.39 -0.02 1.63 16 17 C -0.12 -2.00 3.87 -19.86 -0.08 -2.08 16 18 C -0.11 -1.47 8.03 22.27 0.18 -1.29 16 19 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 20 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 21 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 22 C -0.12 -2.18 6.66 22.27 0.15 -2.03 16 23 N -0.51 -8.51 4.71 -862.22 -4.06 -12.57 16 24 C 0.02 0.31 5.07 86.65 0.44 0.75 16 25 C -0.12 -1.84 7.06 31.80 0.22 -1.62 16 26 C -0.12 -1.53 6.93 31.47 0.22 -1.31 16 27 C 0.03 0.37 6.47 86.45 0.56 0.93 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 30 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 31 H 0.42 9.37 8.14 -92.71 -0.75 8.62 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.53 5.55 -2.39 -0.01 1.51 16 34 H 0.14 1.35 7.81 -2.91 -0.02 1.33 16 35 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.12 2.29 5.72 -2.91 -0.02 2.28 16 39 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 40 H 0.06 1.17 4.38 -2.38 -0.01 1.16 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 0.72 5.25 -2.39 -0.01 0.71 16 46 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -75.98 378.80 -0.12 -76.11 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.23 Total: 24.36 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 5.09 Total: -18.65 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -6.27 Total: -90.79 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -75.98 -0.12 -76.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046024550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.692 kcal (2) G-P(sol) polarization free energy of solvation -75.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds