Wall clock time and date at job start Tue Mar 31 2020 18:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99537 * 2 1 4 4 H 1.48504 * 109.46831 * 240.00066 * 3 2 1 5 5 H 1.48497 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47108 * 120.00545 * 3 2 1 7 7 C 1.38807 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00037 * 163.07085 * 7 2 1 9 9 N 1.36936 * 120.00146 * 343.06993 * 7 2 1 10 10 C 1.46929 * 120.62795 * 331.83792 * 9 7 2 11 11 C 1.53194 * 108.77428 * 233.63055 * 10 9 7 12 12 C 1.53039 * 109.31363 * 305.36497 * 11 10 9 13 13 C 1.52994 * 109.46286 * 181.38890 * 12 11 10 14 14 N 1.46496 * 109.47380 * 174.97182 * 13 12 11 15 15 C 1.34780 * 120.00137 * 180.27215 * 14 13 12 16 16 O 1.21695 * 119.99689 * 359.72796 * 15 14 13 17 17 C 1.46583 * 119.99906 * 179.72265 * 15 14 13 18 18 C 1.35866 * 125.41471 * 179.97438 * 17 15 14 19 19 C 1.39171 * 114.00008 * 179.97438 * 18 17 15 20 20 C 1.34361 * 113.99968 * 0.02562 * 19 18 17 21 21 S 1.71486 * 111.07360 * 359.71673 * 20 19 18 22 22 C 1.52370 * 110.38795 * 179.97438 * 20 19 18 23 23 C 1.54154 * 104.90175 * 342.44799 * 22 20 19 24 24 C 1.52825 * 136.18834 * 180.02562 * 19 18 17 25 25 C 1.53037 * 109.52833 * 61.36792 * 12 11 10 26 26 C 1.46928 * 120.63307 * 151.85906 * 9 7 2 27 27 H 0.96996 * 120.00735 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.58762 * 113.84145 * 10 9 7 29 29 H 1.09004 * 109.70497 * 353.48300 * 10 9 7 30 30 H 1.08997 * 109.49662 * 185.41395 * 11 10 9 31 31 H 1.08998 * 109.52510 * 65.33496 * 11 10 9 32 32 H 1.09001 * 109.45705 * 301.36159 * 12 11 10 33 33 H 1.09006 * 109.47424 * 54.96728 * 13 12 11 34 34 H 1.09007 * 109.47049 * 294.97331 * 13 12 11 35 35 H 0.97001 * 120.00316 * 359.97438 * 14 13 12 36 36 H 1.08005 * 123.00318 * 0.02562 * 18 17 15 37 37 H 1.09007 * 110.35098 * 223.59039 * 22 20 19 38 38 H 1.09003 * 110.44710 * 101.35406 * 22 20 19 39 39 H 1.09007 * 110.95885 * 268.59695 * 23 22 20 40 40 H 1.08999 * 110.99215 * 144.87392 * 23 22 20 41 41 H 1.09004 * 110.33220 * 316.50543 * 24 19 18 42 42 H 1.09000 * 110.33363 * 78.63235 * 24 19 18 43 43 H 1.09004 * 109.49372 * 58.58280 * 25 12 11 44 44 H 1.09000 * 109.49882 * 178.67778 * 25 12 11 45 45 H 1.09003 * 109.58013 * 246.15498 * 26 9 7 46 46 H 1.08999 * 109.58577 * 6.44026 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2849 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2221 -0.2729 9 7 1.3702 -2.3625 0.3443 10 6 0.2264 -2.3409 1.2662 11 6 0.4985 -3.3202 2.4124 12 6 0.8136 -4.7016 1.8340 13 6 1.0519 -5.6905 2.9767 14 7 1.2348 -7.0363 2.4278 15 6 1.4548 -8.0774 3.2550 16 8 1.5065 -7.8986 4.4576 17 6 1.6318 -9.4250 2.7060 18 6 1.8588 -10.5487 3.4352 19 6 1.9901 -11.7035 2.6697 20 6 1.8691 -11.4991 1.3472 21 16 1.5765 -9.8447 1.0032 22 6 2.0267 -12.8122 0.5905 23 6 2.7014 -13.7691 1.5933 24 6 2.2428 -13.1855 2.9437 25 6 2.0688 -4.6171 0.9626 26 6 1.8145 -3.6528 -0.2002 27 1 -0.4851 0.8400 0.0004 28 1 -0.6767 -2.6418 0.7352 29 1 0.0966 -1.3358 1.6675 30 1 -0.3819 -3.3857 3.0517 31 1 1.3479 -2.9686 2.9981 32 1 -0.0265 -5.0419 1.2285 33 1 0.1924 -5.6852 3.6471 34 1 1.9453 -5.3989 3.5292 35 1 1.1933 -7.1790 1.4692 36 1 1.9303 -10.5462 4.5129 37 1 2.6608 -12.6715 -0.2849 38 1 1.0522 -13.1998 0.2935 39 1 3.7867 -13.7295 1.5002 40 1 2.3379 -14.7887 1.4651 41 1 3.0255 -13.3041 3.6930 42 1 1.3251 -13.6712 3.2756 43 1 2.9036 -4.2529 1.5615 44 1 2.3063 -5.6057 0.5698 45 1 1.0408 -4.0606 -0.8509 46 1 2.7337 -3.5123 -0.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123000911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:51 Heat of formation + Delta-G solvation = 5.363717 kcal Electronic energy + Delta-G solvation = -25634.523076 eV Core-core repulsion = 22036.480712 eV Total energy + Delta-G solvation = -3598.042364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10431 -39.39277 -37.80746 -35.06184 -34.61473 -32.89211 -30.87007 -29.79205 -28.99549 -28.59149 -26.74754 -24.42684 -23.31352 -22.28223 -22.00075 -21.04992 -20.48764 -19.22759 -18.85023 -18.09957 -16.75255 -16.45087 -16.05562 -15.75791 -15.34107 -14.88824 -14.72236 -14.08067 -14.01286 -13.64935 -13.49413 -13.33877 -13.21379 -12.97377 -12.75288 -12.36763 -12.34040 -12.31635 -12.11983 -11.88323 -11.63274 -11.34843 -11.25113 -11.17322 -10.98364 -10.71470 -10.51776 -10.29103 -10.23191 -10.16507 -9.90038 -9.56132 -9.45849 -9.14256 -8.88208 -8.62530 -8.46256 -6.66688 -5.78559 -3.21041 0.28443 1.06771 1.64763 2.05561 3.06898 3.09899 3.38804 3.44621 3.46092 4.06297 4.10595 4.50098 4.53029 4.59884 4.83560 5.03015 5.08241 5.09715 5.21261 5.22864 5.31687 5.36549 5.40983 5.43614 5.48639 5.58966 5.65151 5.70529 5.84814 5.90897 5.96564 6.03735 6.06528 6.12573 6.31516 6.36286 6.44803 6.59608 6.67976 6.75556 6.80807 6.97429 7.35313 7.41143 7.65914 7.79691 8.07715 8.45779 9.21952 9.85425 10.42197 11.29980 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.002095 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.685528 B =13362.537104 C =13892.541144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.124 3.876 14 N -0.719 5.719 15 C 0.589 3.411 16 O -0.533 6.533 17 C -0.263 4.263 18 C -0.039 4.039 19 C -0.140 4.140 20 C -0.223 4.223 21 S 0.222 5.778 22 C -0.045 4.045 23 C -0.118 4.118 24 C -0.057 4.057 25 C -0.128 4.128 26 C 0.146 3.854 27 H 0.254 0.746 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -27.408 2.565 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.110 4.110 13 C 0.001 3.999 14 N -0.370 5.370 15 C 0.375 3.625 16 O -0.411 6.411 17 C -0.383 4.383 18 C -0.072 4.072 19 C -0.152 4.152 20 C -0.342 4.342 21 S 0.492 5.508 22 C -0.084 4.084 23 C -0.157 4.157 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.253 -26.197 2.049 26.374 hybrid contribution 0.572 0.008 0.845 1.020 sum 2.824 -26.189 2.894 26.499 Atomic orbital electron populations 1.70011 1.05249 1.25619 1.53897 1.25043 0.95293 0.98409 1.00922 0.86374 0.78917 0.83365 0.78132 1.20904 1.21646 1.21030 1.19136 0.92508 0.84845 1.41726 0.91806 1.44040 1.35906 1.01509 1.50038 1.20763 0.88613 0.98154 0.87888 1.22180 1.00422 0.94512 1.00119 1.21327 0.98843 0.95428 0.95383 1.21655 1.01831 0.79556 0.96845 1.45976 1.72843 1.08235 1.09956 1.16886 0.76829 0.82599 0.86231 1.90827 1.51355 1.84694 1.14265 1.24289 1.18295 0.98162 0.97524 1.20199 0.96577 0.89104 1.01366 1.20386 1.05793 0.96524 0.92531 1.25677 1.08015 1.00356 1.00177 1.82905 1.66896 0.97301 1.03720 1.20877 1.01623 0.88262 0.97627 1.22288 1.00968 0.98658 0.93798 1.20998 1.01762 0.88800 0.98078 1.22087 0.97028 0.98706 0.98908 1.20885 0.97555 0.87009 0.92648 0.93582 0.96433 0.89371 0.92999 0.92321 0.91247 0.91441 0.91246 0.76769 0.83207 0.90390 0.89718 0.90563 0.89972 0.90594 0.90181 0.92052 0.93584 0.96590 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 2 C 0.00 0.05 4.92 -17.44 -0.09 -0.03 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 10 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 11 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 12 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 13 C 0.12 1.80 5.06 -4.05 -0.02 1.78 16 14 N -0.72 -9.52 5.27 -61.65 -0.32 -9.84 16 15 C 0.59 8.53 7.78 -12.89 -0.10 8.43 16 16 O -0.53 -9.47 16.82 5.19 0.09 -9.38 16 17 C -0.26 -3.17 6.41 -37.07 -0.24 -3.41 16 18 C -0.04 -0.44 9.99 -40.09 -0.40 -0.84 16 19 C -0.14 -1.30 6.49 -104.58 -0.68 -1.98 16 20 C -0.22 -1.97 7.10 -34.85 -0.25 -2.22 16 21 S 0.22 2.09 22.15 -107.50 -2.38 -0.29 16 22 C -0.04 -0.27 6.80 -26.45 -0.18 -0.45 16 23 C -0.12 -0.58 7.10 -25.56 -0.18 -0.76 16 24 C -0.06 -0.37 6.81 -26.25 -0.18 -0.54 16 25 C -0.13 -2.11 5.25 -26.61 -0.14 -2.25 16 26 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 4.55 6.76 -40.82 -0.28 4.27 16 36 H 0.15 1.63 8.05 -52.48 -0.42 1.21 16 37 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.64 7.15 -51.93 -0.37 0.26 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -31.71 378.14 -12.09 -43.80 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.26 Total: 0.60 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.98 Total: -6.62 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.22 Total: -50.45 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.71 -12.09 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123000911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds