Wall clock time and date at job start Tue Mar 31 2020 17:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35537 * 117.00107 * 2 1 4 4 C 1.39037 * 120.47172 * 179.97438 * 3 2 1 5 5 C 1.39145 * 118.27922 * 180.02562 * 4 3 2 6 6 N 1.38980 * 120.48860 * 179.97438 * 5 4 3 7 7 C 1.34767 * 120.00090 * 185.41368 * 6 5 4 8 8 O 1.21354 * 119.99968 * 4.62207 * 7 6 5 9 9 C 1.49386 * 120.00320 * 184.62670 * 7 6 5 10 10 O 1.21358 * 119.99077 * 359.96359 * 9 7 6 11 11 N 1.34771 * 120.00077 * 179.68702 * 9 7 6 12 12 C 1.46493 * 120.00284 * 354.87461 * 11 9 7 13 13 C 1.50703 * 109.47615 * 83.86911 * 12 11 9 14 14 H 1.08002 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00262 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99879 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47382 * 90.00158 * 17 15 13 19 19 H 1.48502 * 109.46903 * 210.00114 * 17 15 13 20 20 H 1.48495 * 109.47219 * 330.00102 * 17 15 13 21 21 C 1.46506 * 119.99503 * 174.87152 * 11 9 7 22 22 C 1.53002 * 109.47073 * 85.25396 * 21 11 9 23 23 C 1.52992 * 117.49562 * 243.61972 * 22 21 11 24 24 C 1.52997 * 117.49822 * 174.99571 * 22 21 11 25 25 N 1.33104 * 119.02146 * 0.26129 * 5 4 3 26 26 C 1.31710 * 120.84902 * 359.48122 * 25 5 4 27 27 N 1.31790 * 121.89110 * 0.53113 * 26 25 5 28 28 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47311 * 299.99909 * 1 2 3 30 30 H 1.09007 * 109.47183 * 60.00121 * 1 2 3 31 31 H 1.07992 * 120.86324 * 0.05391 * 4 3 2 32 32 H 0.97000 * 119.99688 * 5.41413 * 6 5 4 33 33 H 1.08999 * 109.47294 * 203.87256 * 12 11 9 34 34 H 1.09003 * 109.47181 * 323.87080 * 12 11 9 35 35 H 0.97002 * 119.99782 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46758 * 205.24886 * 21 11 9 37 37 H 1.08991 * 109.47603 * 325.24832 * 21 11 9 38 38 H 1.09002 * 115.55078 * 29.32398 * 22 21 11 39 39 H 1.08999 * 117.50310 * 359.97438 * 23 22 21 40 40 H 1.09002 * 117.50224 * 145.02343 * 23 22 21 41 41 H 1.08999 * 117.49882 * 214.97609 * 24 22 21 42 42 H 1.09004 * 117.49510 * 0.02562 * 24 22 21 43 43 H 1.08001 * 119.05144 * 180.26341 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4321 1.2918 0.0005 5 6 4.0159 2.5548 0.0011 6 7 5.3989 2.6924 0.0021 7 6 5.9544 3.9153 0.1128 8 8 5.2508 4.8870 0.2956 9 6 7.4362 4.0747 0.0102 10 8 8.1397 3.1028 -0.1720 11 7 7.9911 5.2985 0.1146 12 6 7.1366 6.4840 0.2157 13 6 6.7203 6.6825 1.6505 14 1 7.0589 5.9944 2.4110 15 6 5.9074 7.7423 1.9922 16 7 5.4947 8.5799 1.0661 17 14 5.3921 7.9886 3.7708 18 1 6.3859 8.8509 4.4593 19 1 4.0579 8.6392 3.8140 20 1 5.3228 6.6714 4.4530 21 6 9.4489 5.4430 0.1268 22 6 9.9682 5.4970 -1.3114 23 6 10.8919 4.3677 -1.7718 24 6 11.4609 5.7644 -1.5139 25 7 3.2304 3.6293 0.0063 26 6 1.9190 3.5072 0.0008 27 7 1.3294 2.3285 0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0412 0.4000 0.0001 32 1 5.9643 1.9082 -0.0767 33 1 7.6879 7.3596 -0.1270 34 1 6.2504 6.3472 -0.4040 35 1 4.9225 9.3253 1.3064 36 1 9.7184 6.3631 0.6452 37 1 9.8941 4.5920 0.6421 38 1 9.2781 5.9140 -2.0450 39 1 11.1301 3.5864 -1.0500 40 1 10.8098 4.0413 -2.8085 41 1 11.7530 6.3568 -2.3809 42 1 12.0731 5.9013 -0.6225 43 1 1.3093 4.3987 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275973364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:29 Heat of formation + Delta-G solvation = 6.503628 kcal Electronic energy + Delta-G solvation = -28801.259977 eV Core-core repulsion = 24656.973829 eV Total energy + Delta-G solvation = -4144.286148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31598 -40.14233 -38.76162 -37.92103 -36.88266 -35.60520 -34.35532 -32.39440 -32.26106 -31.15576 -28.06493 -27.63154 -26.79549 -24.62344 -24.40812 -23.04913 -22.23529 -21.99388 -20.58951 -19.60396 -18.88810 -17.59487 -17.16349 -16.55553 -16.39237 -16.28669 -15.71065 -15.38666 -15.25867 -15.17378 -14.77046 -14.46956 -14.35593 -14.18081 -13.99450 -13.87900 -13.33143 -13.01042 -12.31715 -12.21115 -12.07325 -11.80631 -11.63696 -11.43132 -11.31739 -11.11198 -10.94532 -10.83789 -10.65611 -10.48740 -10.27059 -10.00255 -9.70263 -9.62940 -9.42383 -9.34053 -8.70780 -8.57389 -8.25947 -7.90498 -6.01806 -4.03922 0.96029 1.24996 2.19182 2.42231 2.99714 3.31691 3.38596 3.42210 3.73594 3.76821 4.04689 4.08316 4.12500 4.41986 4.52851 4.91219 4.96019 5.01734 5.04113 5.11361 5.17172 5.22156 5.25913 5.35760 5.37544 5.46648 5.65889 5.79714 5.93464 5.97082 6.07195 6.09292 6.30666 6.45604 6.48221 6.67926 6.77039 7.01205 7.29813 7.36223 7.45951 7.85941 8.04118 8.16920 8.21012 8.38754 8.62519 8.95372 9.58920 11.07133 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003976 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.314006 B = 7041.145771 C = 9421.597894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.378 3.622 4 C -0.291 4.291 5 C 0.442 3.558 6 N -0.642 5.642 7 C 0.473 3.527 8 O -0.366 6.366 9 C 0.510 3.490 10 O -0.555 6.555 11 N -0.555 5.555 12 C 0.228 3.772 13 C -0.517 4.517 14 H 0.053 0.947 15 C 0.073 3.927 16 N -0.887 5.887 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.277 1.277 21 C 0.149 3.851 22 C -0.162 4.162 23 C -0.170 4.170 24 C -0.180 4.180 25 N -0.526 5.526 26 C 0.366 3.634 27 N -0.603 5.603 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.425 0.575 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -13.066 -4.661 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.208 6.208 3 C 0.193 3.807 4 C -0.318 4.318 5 C 0.204 3.796 6 N -0.291 5.291 7 C 0.252 3.748 8 O -0.226 6.226 9 C 0.292 3.708 10 O -0.436 6.436 11 N -0.285 5.285 12 C 0.109 3.891 13 C -0.555 4.555 14 H 0.071 0.929 15 C -0.130 4.130 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.026 3.974 22 C -0.181 4.181 23 C -0.207 4.207 24 C -0.218 4.218 25 N -0.251 5.251 26 C 0.077 3.923 27 N -0.336 5.336 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.375 -12.038 -4.630 13.115 hybrid contribution 0.084 -0.767 0.985 1.252 sum -2.291 -12.805 -3.645 13.510 Atomic orbital electron populations 1.22915 0.76766 1.03016 1.02858 1.86202 1.23271 1.24219 1.87147 1.19604 0.88659 0.84962 0.87449 1.21004 0.93371 0.98411 1.18995 1.18333 0.85317 0.88559 0.87415 1.43413 1.03049 1.11602 1.71073 1.20633 0.90305 0.83065 0.80785 1.91105 1.62099 1.35299 1.34051 1.19658 0.87617 0.84251 0.79246 1.90656 1.63217 1.38811 1.50955 1.48227 1.06928 1.07576 1.65783 1.19988 0.89901 0.80387 0.98776 1.21163 1.30755 1.11215 0.92415 0.92880 1.24765 0.95379 0.95700 0.97151 1.69908 1.34839 1.15288 1.32540 0.86583 0.77977 0.78111 0.85184 1.20818 1.21121 1.20181 1.21036 0.79776 1.02739 0.93814 1.22732 0.92828 1.03551 0.98962 1.22940 1.04085 0.91787 1.01937 1.22928 0.96070 0.99654 1.03105 1.68573 1.05910 1.30949 1.19642 1.24703 0.87534 0.93621 0.86402 1.68129 1.41593 0.99136 1.24768 0.88520 0.91988 0.92004 0.83108 0.73588 0.94756 0.91726 0.92832 0.89155 0.90726 0.87742 0.88683 0.89460 0.89070 0.88839 0.77998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.41 101.05 1.05 1.39 16 2 O -0.30 -3.59 10.49 -18.30 -0.19 -3.78 16 3 C 0.38 5.18 7.52 -16.77 -0.13 5.05 16 4 C -0.29 -3.92 9.99 -38.95 -0.39 -4.31 16 5 C 0.44 7.22 7.43 -154.43 -1.15 6.07 16 6 N -0.64 -10.47 5.37 -11.75 -0.06 -10.54 16 7 C 0.47 9.57 7.68 -11.62 -0.09 9.49 16 8 O -0.37 -8.75 10.46 5.49 0.06 -8.69 16 9 C 0.51 10.31 7.64 -11.62 -0.09 10.22 16 10 O -0.56 -10.90 16.20 5.49 0.09 -10.81 16 11 N -0.56 -11.48 2.48 -175.60 -0.44 -11.92 16 12 C 0.23 5.55 4.74 -5.20 -0.02 5.53 16 13 C -0.52 -13.89 7.81 -34.44 -0.27 -14.16 16 14 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 15 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 16 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.15 2.59 5.57 -4.04 -0.02 2.57 16 22 C -0.16 -2.46 5.98 -90.62 -0.54 -3.01 16 23 C -0.17 -2.27 10.18 -26.73 -0.27 -2.55 16 24 C -0.18 -2.22 10.25 -26.73 -0.27 -2.49 16 25 N -0.53 -9.58 8.07 -13.81 -0.11 -9.70 16 26 C 0.37 5.54 12.28 -92.23 -1.13 4.41 16 27 N -0.60 -8.52 9.38 -14.71 -0.14 -8.66 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.43 5.66 8.20 -40.82 -0.33 5.32 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 34 H 0.07 1.73 5.82 -51.93 -0.30 1.43 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 1.55 8.04 -51.93 -0.42 1.13 16 37 H 0.07 1.26 7.39 -51.93 -0.38 0.87 16 38 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.20 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -32.35 374.23 -8.48 -40.84 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.62 Total: 5.55 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: -3.42 Total: 20.13 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -0.01 Total: -65.55 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.35 -8.48 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275973364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.339 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds