Wall clock time and date at job start Tue Mar 31 2020 17:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35537 * 117.00107 * 2 1 4 4 C 1.39037 * 120.47172 * 179.97438 * 3 2 1 5 5 C 1.39145 * 118.27922 * 180.02562 * 4 3 2 6 6 N 1.38980 * 120.48860 * 179.97438 * 5 4 3 7 7 C 1.34767 * 120.00090 * 185.41368 * 6 5 4 8 8 O 1.21354 * 119.99968 * 4.62207 * 7 6 5 9 9 C 1.49386 * 120.00320 * 184.62670 * 7 6 5 10 10 O 1.21358 * 119.99077 * 359.96359 * 9 7 6 11 11 N 1.34771 * 120.00077 * 179.68702 * 9 7 6 12 12 C 1.46493 * 120.00284 * 354.87461 * 11 9 7 13 13 C 1.50703 * 109.47615 * 83.86911 * 12 11 9 14 14 H 1.08002 * 119.99698 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00262 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99879 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99839 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47382 * 90.00158 * 17 15 13 19 19 H 1.48502 * 109.46903 * 210.00114 * 17 15 13 20 20 H 1.48495 * 109.47219 * 330.00102 * 17 15 13 21 21 C 1.46506 * 119.99503 * 174.87152 * 11 9 7 22 22 C 1.53002 * 109.47073 * 85.25396 * 21 11 9 23 23 C 1.52992 * 117.49562 * 243.61972 * 22 21 11 24 24 C 1.52997 * 117.49822 * 174.99571 * 22 21 11 25 25 N 1.33104 * 119.02146 * 0.26129 * 5 4 3 26 26 C 1.31710 * 120.84902 * 359.48122 * 25 5 4 27 27 N 1.31790 * 121.89110 * 0.53113 * 26 25 5 28 28 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47311 * 299.99909 * 1 2 3 30 30 H 1.09007 * 109.47183 * 60.00121 * 1 2 3 31 31 H 1.07992 * 120.86324 * 0.05391 * 4 3 2 32 32 H 0.97000 * 119.99688 * 5.41413 * 6 5 4 33 33 H 1.08999 * 109.47294 * 203.87256 * 12 11 9 34 34 H 1.09003 * 109.47181 * 323.87080 * 12 11 9 35 35 H 0.97002 * 119.99782 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46758 * 205.24886 * 21 11 9 37 37 H 1.08991 * 109.47603 * 325.24832 * 21 11 9 38 38 H 1.09002 * 115.55078 * 29.32398 * 22 21 11 39 39 H 1.08999 * 117.50310 * 359.97438 * 23 22 21 40 40 H 1.09002 * 117.50224 * 145.02343 * 23 22 21 41 41 H 1.08999 * 117.49882 * 214.97609 * 24 22 21 42 42 H 1.09004 * 117.49510 * 0.02562 * 24 22 21 43 43 H 1.08001 * 119.05144 * 180.26341 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4321 1.2918 0.0005 5 6 4.0159 2.5548 0.0011 6 7 5.3989 2.6924 0.0021 7 6 5.9544 3.9153 0.1128 8 8 5.2508 4.8870 0.2956 9 6 7.4362 4.0747 0.0102 10 8 8.1397 3.1028 -0.1720 11 7 7.9911 5.2985 0.1146 12 6 7.1366 6.4840 0.2157 13 6 6.7203 6.6825 1.6505 14 1 7.0589 5.9944 2.4110 15 6 5.9074 7.7423 1.9922 16 7 5.4947 8.5799 1.0661 17 14 5.3921 7.9886 3.7708 18 1 6.3859 8.8509 4.4593 19 1 4.0579 8.6392 3.8140 20 1 5.3228 6.6714 4.4530 21 6 9.4489 5.4430 0.1268 22 6 9.9682 5.4970 -1.3114 23 6 10.8919 4.3677 -1.7718 24 6 11.4609 5.7644 -1.5139 25 7 3.2304 3.6293 0.0063 26 6 1.9190 3.5072 0.0008 27 7 1.3294 2.3285 0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0412 0.4000 0.0001 32 1 5.9643 1.9082 -0.0767 33 1 7.6879 7.3596 -0.1270 34 1 6.2504 6.3472 -0.4040 35 1 4.9225 9.3253 1.3064 36 1 9.7184 6.3631 0.6452 37 1 9.8941 4.5920 0.6421 38 1 9.2781 5.9140 -2.0450 39 1 11.1301 3.5864 -1.0500 40 1 10.8098 4.0413 -2.8085 41 1 11.7530 6.3568 -2.3809 42 1 12.0731 5.9013 -0.6225 43 1 1.3093 4.3987 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275973364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:29 Heat of formation + Delta-G solvation = -14.529384 kcal Electronic energy + Delta-G solvation = -28802.172037 eV Core-core repulsion = 24656.973829 eV Total energy + Delta-G solvation = -4145.198208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54845 -41.60087 -39.99102 -39.17499 -38.21125 -37.06230 -35.91028 -34.39081 -33.45837 -32.33789 -29.75854 -28.72926 -28.24317 -26.03727 -25.56226 -24.87957 -23.47680 -23.11593 -21.87555 -20.98797 -20.05486 -18.98820 -18.70778 -18.37446 -17.86203 -17.30947 -16.92129 -16.79474 -16.73565 -16.46740 -16.14575 -15.92162 -15.70760 -15.54811 -15.08183 -15.05951 -14.87854 -14.44271 -14.25223 -13.70243 -13.38748 -12.98394 -12.91821 -12.87109 -12.73177 -12.59469 -12.37991 -12.30096 -12.25701 -11.89342 -11.75902 -11.72921 -11.29737 -10.86172 -10.76386 -10.54506 -10.45287 -9.94097 -9.89994 -9.61002 -8.11843 -6.19740 -0.26690 0.08122 0.67125 1.11007 1.38430 1.40986 1.49116 1.93908 2.22965 2.35201 2.48607 2.80689 2.94353 3.06229 3.15841 3.22814 3.56309 3.83984 3.84911 4.03533 4.06720 4.13967 4.36601 4.40175 4.43709 4.46010 4.63161 4.70077 4.76924 4.83380 4.84356 4.87487 5.05668 5.21283 5.29209 5.31649 5.38942 5.55089 5.57092 5.78093 5.97124 6.11650 6.17211 6.31426 6.70958 6.83423 7.04225 7.17518 7.46189 8.96583 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003976 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.314006 B = 7041.145771 C = 9421.597894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.373 3.627 4 C -0.273 4.273 5 C 0.421 3.579 6 N -0.628 5.628 7 C 0.475 3.525 8 O -0.412 6.412 9 C 0.509 3.491 10 O -0.548 6.548 11 N -0.561 5.561 12 C 0.250 3.750 13 C -0.518 4.518 14 H 0.044 0.956 15 C 0.026 3.974 16 N -0.918 5.918 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.281 1.281 21 C 0.148 3.852 22 C -0.187 4.187 23 C -0.164 4.164 24 C -0.156 4.156 25 N -0.570 5.570 26 C 0.360 3.640 27 N -0.597 5.597 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.182 0.818 32 H 0.439 0.561 33 H 0.021 0.979 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -14.964 -4.392 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.208 6.208 3 C 0.188 3.812 4 C -0.300 4.300 5 C 0.184 3.816 6 N -0.279 5.279 7 C 0.255 3.745 8 O -0.275 6.275 9 C 0.291 3.709 10 O -0.429 6.429 11 N -0.291 5.291 12 C 0.130 3.870 13 C -0.557 4.557 14 H 0.062 0.938 15 C -0.173 4.173 16 N -0.558 5.558 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.206 1.206 21 C 0.026 3.974 22 C -0.206 4.206 23 C -0.201 4.201 24 C -0.193 4.193 25 N -0.295 5.295 26 C 0.072 3.928 27 N -0.330 5.330 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.200 0.800 32 H 0.281 0.719 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.007 -14.009 -4.367 14.811 hybrid contribution -0.105 -0.352 0.852 0.928 sum -2.113 -14.361 -3.515 14.935 Atomic orbital electron populations 1.23213 0.74899 1.05257 1.02753 1.86219 1.25045 1.22871 1.86653 1.19839 0.89010 0.85465 0.86912 1.21199 0.93721 0.98202 1.16884 1.18500 0.84942 0.89380 0.88815 1.43149 1.03596 1.10789 1.70355 1.20708 0.90136 0.83713 0.79944 1.91092 1.62806 1.36912 1.36687 1.19730 0.87855 0.84162 0.79146 1.90642 1.63175 1.38326 1.50720 1.48158 1.08047 1.06736 1.66139 1.19438 0.89311 0.81175 0.97067 1.21330 1.30375 1.10693 0.93280 0.93795 1.25459 0.95568 0.95681 1.00626 1.70009 1.35686 1.15883 1.34204 0.85704 0.77867 0.77806 0.81052 1.19388 1.20945 1.20620 1.21183 0.77827 1.02824 0.95529 1.22563 0.94456 1.06407 0.97180 1.22991 1.02766 0.91993 1.02383 1.23047 0.93357 0.98753 1.04156 1.68489 1.07364 1.32702 1.20940 1.25041 0.86906 0.94646 0.86242 1.68191 1.41481 0.99104 1.24244 0.85178 0.92205 0.91979 0.80028 0.71944 0.96081 0.94197 0.92816 0.89449 0.90098 0.89369 0.88669 0.88529 0.87458 0.87489 0.76283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.41 113.37 1.18 1.66 16 2 O -0.30 -6.43 10.49 -88.41 -0.93 -7.36 16 3 C 0.37 9.59 7.52 84.72 0.64 10.22 16 4 C -0.27 -6.92 9.99 22.68 0.23 -6.69 16 5 C 0.42 13.61 7.43 132.86 0.99 14.60 16 6 N -0.63 -20.40 5.37 -309.45 -1.66 -22.06 16 7 C 0.48 19.68 7.68 87.25 0.67 20.35 16 8 O -0.41 -20.49 10.46 -3.26 -0.03 -20.52 16 9 C 0.51 20.77 7.64 87.25 0.67 21.44 16 10 O -0.55 -21.12 16.20 -3.27 -0.05 -21.17 16 11 N -0.56 -23.71 2.48 -827.82 -2.06 -25.77 16 12 C 0.25 12.67 4.74 85.64 0.41 13.08 16 13 C -0.52 -28.54 7.81 25.60 0.20 -28.34 16 14 H 0.04 2.45 7.81 -2.91 -0.02 2.42 16 15 C 0.03 1.49 5.46 84.65 0.46 1.95 16 16 N -0.92 -54.00 13.29 21.45 0.28 -53.71 16 17 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 C 0.15 5.15 5.57 86.38 0.48 5.63 16 22 C -0.19 -5.60 5.98 -10.80 -0.06 -5.67 16 23 C -0.16 -4.09 10.18 30.59 0.31 -3.78 16 24 C -0.16 -3.50 10.25 30.59 0.31 -3.19 16 25 N -0.57 -21.11 8.07 -197.60 -1.60 -22.71 16 26 C 0.36 10.91 12.28 180.91 2.22 13.13 16 27 N -0.60 -16.30 9.38 -313.03 -2.94 -19.23 16 28 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.06 0.92 8.12 -2.38 -0.02 0.90 16 31 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.44 11.23 8.20 -92.71 -0.76 10.47 16 33 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 34 H 0.04 2.26 5.82 -2.39 -0.01 2.24 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.09 3.02 8.04 -2.39 -0.02 3.00 16 37 H 0.08 2.67 7.39 -2.39 -0.02 2.66 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 42 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.22 5.48 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -70.68 374.23 2.04 -68.63 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.30 Total: 22.44 kcal Atomic # 6 Polarization: 45.70 SS G_CDS: 8.70 Total: 54.40 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -7.96 Total: -143.48 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.01 Total: -49.05 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.68 2.04 -68.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275973364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.102 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds