Wall clock time and date at job start Tue Mar 31 2020 18:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99717 * 2 1 4 4 H 1.48503 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46630 * 299.99272 * 3 2 1 6 6 H 1.48492 * 109.47149 * 59.99484 * 3 2 1 7 7 C 1.37879 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47125 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99820 * 180.02562 * 12 11 10 14 14 O 1.21344 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.49452 * 119.99603 * 180.02562 * 13 12 11 16 16 O 1.21342 * 120.00309 * 353.54470 * 15 13 12 17 17 N 1.34775 * 119.99648 * 173.54181 * 15 13 12 18 18 C 1.47137 * 121.28191 * 172.96181 * 17 15 13 19 19 C 1.52781 * 107.90805 * 115.81947 * 18 17 15 20 20 C 1.50608 * 110.86382 * 47.44301 * 19 18 17 21 21 C 1.38945 * 117.59423 * 160.55107 * 20 19 18 22 22 C 1.38134 * 120.56119 * 178.75662 * 21 20 19 23 23 F 1.35101 * 120.11364 * 180.02562 * 22 21 20 24 24 C 1.38494 * 119.76952 * 0.03737 * 22 21 20 25 25 C 1.37915 * 119.69217 * 0.27228 * 24 22 21 26 26 C 1.37688 * 122.85703 * 339.82221 * 20 19 18 27 27 C 1.46684 * 121.34121 * 353.01381 * 17 15 13 28 28 H 0.96992 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47348 * 59.99894 * 9 7 2 30 30 H 1.09005 * 109.47535 * 300.00155 * 9 7 2 31 31 H 1.09000 * 109.46986 * 60.00335 * 10 9 7 32 32 H 1.08998 * 109.47247 * 300.00188 * 10 9 7 33 33 H 1.09000 * 109.46837 * 60.00339 * 11 10 9 34 34 H 1.08998 * 109.47290 * 300.00258 * 11 10 9 35 35 H 0.96997 * 119.99873 * 0.02562 * 12 11 10 36 36 H 1.08998 * 109.78802 * 356.21270 * 18 17 15 37 37 H 1.08996 * 109.77105 * 235.41480 * 18 17 15 38 38 H 1.09001 * 109.20149 * 287.08815 * 19 18 17 39 39 H 1.08998 * 109.20509 * 167.79788 * 19 18 17 40 40 H 1.07990 * 119.71585 * 358.77368 * 21 20 19 41 41 H 1.08000 * 120.15234 * 180.24137 * 24 22 21 42 42 H 1.07999 * 119.72611 * 179.97438 * 25 24 22 43 43 H 1.08999 * 109.43670 * 104.36055 * 27 17 15 44 44 H 1.09010 * 109.42919 * 344.45066 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0006 13 6 1.9833 -7.3713 0.0005 14 8 0.7903 -7.5930 0.0004 15 6 2.9545 -8.5071 0.0004 16 8 4.1425 -8.2897 -0.1177 17 7 2.5109 -9.7730 0.1316 18 6 3.4199 -10.9204 -0.0173 19 6 3.4904 -11.6416 1.3277 20 6 2.1114 -11.8575 1.8935 21 6 1.9623 -12.8342 2.8704 22 6 0.7298 -13.0658 3.4496 23 9 0.5951 -14.0174 4.3991 24 6 -0.3674 -12.3193 3.0533 25 6 -0.2212 -11.3542 2.0791 26 6 1.0168 -11.1240 1.4940 27 6 1.1034 -10.0615 0.4272 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.8720 -3.6043 0.8906 32 1 2.8721 -3.6043 -0.8894 33 1 0.8536 -5.0451 -0.8886 34 1 0.8541 -5.0446 0.8913 35 1 3.3861 -5.9233 0.0002 36 1 4.4126 -10.5704 -0.3005 37 1 3.0360 -11.5984 -0.7795 38 1 4.0744 -11.0418 2.0259 39 1 3.9772 -12.6073 1.1917 40 1 2.8172 -13.4169 3.1797 41 1 -1.3331 -12.4926 3.5048 42 1 -1.0765 -10.7720 1.7694 43 1 0.6078 -10.4142 -0.4773 44 1 0.6133 -9.1535 0.7788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286146423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:14 Heat of formation + Delta-G solvation = -91.980431 kcal Electronic energy + Delta-G solvation = -27409.513418 eV Core-core repulsion = 23241.036720 eV Total energy + Delta-G solvation = -4168.476699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.23606 -41.24655 -39.88004 -38.55283 -36.62474 -35.57805 -33.58132 -33.27891 -31.46112 -31.29859 -30.07870 -27.41876 -26.21031 -25.05881 -23.82183 -22.98866 -22.39680 -21.04345 -20.72080 -19.51322 -17.97243 -17.72688 -17.18748 -16.64483 -16.48168 -16.22949 -16.06856 -15.95423 -15.46556 -15.21241 -14.95594 -14.57224 -14.44945 -14.28271 -14.02982 -13.72687 -13.68322 -13.54856 -13.04926 -12.68296 -12.57943 -12.34744 -12.06187 -11.91042 -11.84247 -11.70524 -11.42534 -11.18048 -10.95230 -10.80471 -10.59936 -9.94756 -9.74852 -9.43665 -9.33345 -9.20030 -9.14658 -9.06946 -8.75608 -8.40892 -6.05489 -4.08455 0.72074 0.77895 1.29826 2.12673 3.05870 3.11838 3.28383 3.32782 3.36281 3.40186 3.81670 4.13519 4.24131 4.28291 4.38776 4.42462 4.59733 4.68997 4.77316 4.91624 5.01469 5.15925 5.30674 5.32209 5.32618 5.48156 5.51585 5.53279 5.62925 5.63892 5.71710 5.80539 5.94208 6.02644 6.05684 6.25199 6.47740 6.49341 6.65186 6.78064 6.91097 7.20503 7.58598 7.59398 7.69732 7.92480 7.94914 8.33960 8.98284 9.56145 11.05791 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.001907 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.161275 B =14677.500988 C =15424.632234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.687 5.687 13 C 0.502 3.498 14 O -0.520 6.520 15 C 0.515 3.485 16 O -0.517 6.517 17 N -0.588 5.588 18 C 0.109 3.891 19 C -0.097 4.097 20 C -0.047 4.047 21 C -0.154 4.154 22 C 0.096 3.904 23 F -0.141 7.141 24 C -0.152 4.152 25 C -0.080 4.080 26 C -0.102 4.102 27 C 0.125 3.875 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.087 0.913 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.224 -29.036 2.874 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.282 3.718 14 O -0.399 6.399 15 C 0.298 3.702 16 O -0.393 6.393 17 N -0.322 5.322 18 C -0.013 4.013 19 C -0.135 4.135 20 C -0.047 4.047 21 C -0.173 4.173 22 C 0.077 3.923 23 F -0.120 7.120 24 C -0.171 4.171 25 C -0.099 4.099 26 C -0.103 4.103 27 C 0.003 3.997 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.105 0.895 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.876 -28.939 2.834 29.220 hybrid contribution 0.728 0.666 0.294 1.030 sum 3.604 -28.273 3.128 28.673 Atomic orbital electron populations 1.69967 1.06053 1.26639 1.50619 1.25032 0.94874 0.99358 0.95232 0.86516 0.80085 0.83679 0.77607 1.19722 1.20989 1.20993 1.21234 0.93097 0.90860 1.50871 0.92508 1.19036 0.93786 0.90790 0.97722 1.21935 0.99904 0.92930 1.01357 1.21879 0.91711 0.84663 1.02632 1.46109 1.12347 1.04942 1.70442 1.19966 0.88433 0.84508 0.78852 1.90569 1.16295 1.83604 1.49420 1.20267 0.88571 0.83795 0.77607 1.90758 1.16370 1.83952 1.48187 1.47810 1.10760 1.04940 1.68706 1.21710 0.95983 0.86845 0.96771 1.20856 0.93389 1.01934 0.97307 1.19316 0.95239 0.94389 0.95754 1.21121 0.96628 1.00705 0.98875 1.17606 0.94871 0.89748 0.90040 1.91505 1.96608 1.61909 1.61932 1.21104 0.98531 0.97604 0.99880 1.20947 0.97192 0.96796 0.94926 1.20015 0.93322 0.98025 0.98980 1.21442 0.81438 1.00070 0.96745 0.92955 0.96181 0.96186 0.92420 0.92379 0.90945 0.90958 0.75232 0.87877 0.90067 0.89459 0.88973 0.84783 0.84451 0.84300 0.89484 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.69 -9.68 5.55 -60.73 -0.34 -10.01 16 13 C 0.50 6.96 7.74 -11.58 -0.09 6.87 16 14 O -0.52 -7.79 13.27 5.50 0.07 -7.72 16 15 C 0.51 6.48 7.76 -11.59 -0.09 6.39 16 16 O -0.52 -7.35 16.00 5.50 0.09 -7.26 16 17 N -0.59 -5.97 2.93 -174.97 -0.51 -6.48 16 18 C 0.11 0.82 6.42 -3.81 -0.02 0.80 16 19 C -0.10 -0.64 5.86 -28.04 -0.16 -0.81 16 20 C -0.05 -0.38 5.76 -104.61 -0.60 -0.98 16 21 C -0.15 -1.24 9.57 -39.36 -0.38 -1.61 16 22 C 0.10 0.85 7.30 -39.53 -0.29 0.57 16 23 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 24 C -0.15 -1.21 10.04 -39.61 -0.40 -1.60 16 25 C -0.08 -0.63 9.62 -39.47 -0.38 -1.01 16 26 C -0.10 -0.89 5.82 -104.54 -0.61 -1.49 16 27 C 0.12 1.16 5.57 -5.03 -0.03 1.13 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.41 5.33 7.96 -40.82 -0.32 5.00 16 36 H 0.10 0.82 7.10 -51.93 -0.37 0.45 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 40 H 0.13 0.84 8.05 -52.49 -0.42 0.42 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.85 8.05 -52.49 -0.42 0.43 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.15 1.58 4.79 -52.63 -0.25 1.33 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -31.50 372.56 -9.06 -40.57 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.98 Total: 1.07 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.76 Total: -5.09 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.11 Total: -42.11 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.16 Total: -14.98 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.50 -9.06 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286146423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.414 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds