Wall clock time and date at job start Tue Mar 31 2020 18:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99717 * 2 1 4 4 H 1.48503 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46630 * 299.99272 * 3 2 1 6 6 H 1.48492 * 109.47149 * 59.99484 * 3 2 1 7 7 C 1.37879 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47125 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99820 * 180.02562 * 12 11 10 14 14 O 1.21344 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.49452 * 119.99603 * 180.02562 * 13 12 11 16 16 O 1.21342 * 120.00309 * 353.54470 * 15 13 12 17 17 N 1.34775 * 119.99648 * 173.54181 * 15 13 12 18 18 C 1.47137 * 121.28191 * 172.96181 * 17 15 13 19 19 C 1.52781 * 107.90805 * 115.81947 * 18 17 15 20 20 C 1.50608 * 110.86382 * 47.44301 * 19 18 17 21 21 C 1.38945 * 117.59423 * 160.55107 * 20 19 18 22 22 C 1.38134 * 120.56119 * 178.75662 * 21 20 19 23 23 F 1.35101 * 120.11364 * 180.02562 * 22 21 20 24 24 C 1.38494 * 119.76952 * 0.03737 * 22 21 20 25 25 C 1.37915 * 119.69217 * 0.27228 * 24 22 21 26 26 C 1.37688 * 122.85703 * 339.82221 * 20 19 18 27 27 C 1.46684 * 121.34121 * 353.01381 * 17 15 13 28 28 H 0.96992 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47348 * 59.99894 * 9 7 2 30 30 H 1.09005 * 109.47535 * 300.00155 * 9 7 2 31 31 H 1.09000 * 109.46986 * 60.00335 * 10 9 7 32 32 H 1.08998 * 109.47247 * 300.00188 * 10 9 7 33 33 H 1.09000 * 109.46837 * 60.00339 * 11 10 9 34 34 H 1.08998 * 109.47290 * 300.00258 * 11 10 9 35 35 H 0.96997 * 119.99873 * 0.02562 * 12 11 10 36 36 H 1.08998 * 109.78802 * 356.21270 * 18 17 15 37 37 H 1.08996 * 109.77105 * 235.41480 * 18 17 15 38 38 H 1.09001 * 109.20149 * 287.08815 * 19 18 17 39 39 H 1.08998 * 109.20509 * 167.79788 * 19 18 17 40 40 H 1.07990 * 119.71585 * 358.77368 * 21 20 19 41 41 H 1.08000 * 120.15234 * 180.24137 * 24 22 21 42 42 H 1.07999 * 119.72611 * 179.97438 * 25 24 22 43 43 H 1.08999 * 109.43670 * 104.36055 * 27 17 15 44 44 H 1.09010 * 109.42919 * 344.45066 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0006 13 6 1.9833 -7.3713 0.0005 14 8 0.7903 -7.5930 0.0004 15 6 2.9545 -8.5071 0.0004 16 8 4.1425 -8.2897 -0.1177 17 7 2.5109 -9.7730 0.1316 18 6 3.4199 -10.9204 -0.0173 19 6 3.4904 -11.6416 1.3277 20 6 2.1114 -11.8575 1.8935 21 6 1.9623 -12.8342 2.8704 22 6 0.7298 -13.0658 3.4496 23 9 0.5951 -14.0174 4.3991 24 6 -0.3674 -12.3193 3.0533 25 6 -0.2212 -11.3542 2.0791 26 6 1.0168 -11.1240 1.4940 27 6 1.1034 -10.0615 0.4272 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.8720 -3.6043 0.8906 32 1 2.8721 -3.6043 -0.8894 33 1 0.8536 -5.0451 -0.8886 34 1 0.8541 -5.0446 0.8913 35 1 3.3861 -5.9233 0.0002 36 1 4.4126 -10.5704 -0.3005 37 1 3.0360 -11.5984 -0.7795 38 1 4.0744 -11.0418 2.0259 39 1 3.9772 -12.6073 1.1917 40 1 2.8172 -13.4169 3.1797 41 1 -1.3331 -12.4926 3.5048 42 1 -1.0765 -10.7720 1.7694 43 1 0.6078 -10.4142 -0.4773 44 1 0.6133 -9.1535 0.7788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286146423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:14 Heat of formation + Delta-G solvation = -110.491577 kcal Electronic energy + Delta-G solvation = -27410.316122 eV Core-core repulsion = 23241.036720 eV Total energy + Delta-G solvation = -4169.279402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.92437 -42.15692 -40.68341 -39.56010 -37.56190 -36.83805 -35.23721 -34.09760 -33.04478 -32.15560 -30.71373 -29.00263 -27.21823 -26.00667 -25.02785 -23.81990 -23.39765 -22.36830 -21.82341 -20.51652 -18.93296 -18.55006 -18.39299 -17.99974 -17.46929 -17.18144 -16.97181 -16.68429 -16.57841 -16.40067 -16.10313 -15.89335 -15.48569 -15.08671 -15.06345 -14.62390 -14.41962 -14.33017 -14.26639 -13.78482 -13.72216 -13.54233 -13.28738 -13.23242 -12.79793 -12.78372 -12.55217 -12.38525 -12.33114 -12.26317 -11.80000 -11.69018 -11.53519 -11.20207 -10.55143 -10.54540 -10.29689 -10.07568 -9.84880 -9.45594 -8.19313 -6.29796 0.07396 0.18248 0.26488 1.18158 1.41793 1.42625 1.55308 2.02674 2.34123 2.43425 2.49086 3.14746 3.19533 3.22440 3.53142 3.64120 3.78583 4.02920 4.09229 4.11758 4.20048 4.21604 4.28613 4.46917 4.49581 4.54167 4.65194 4.75446 4.82230 4.91998 4.93193 4.95695 5.04956 5.08780 5.14605 5.16493 5.26901 5.31763 5.43074 5.52913 5.72052 5.85247 5.85506 5.89822 6.14461 6.24631 6.59882 6.85919 6.87613 7.39543 8.92675 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.001907 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.161275 B =14677.500988 C =15424.632234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.128 3.872 12 N -0.685 5.685 13 C 0.501 3.499 14 O -0.533 6.533 15 C 0.517 3.483 16 O -0.537 6.537 17 N -0.582 5.582 18 C 0.105 3.895 19 C -0.092 4.092 20 C -0.052 4.052 21 C -0.155 4.155 22 C 0.080 3.920 23 F -0.149 7.149 24 C -0.156 4.156 25 C -0.084 4.084 26 C -0.112 4.112 27 C 0.127 3.873 28 H 0.263 0.737 29 H -0.003 1.003 30 H -0.003 1.003 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.419 0.581 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.100 0.900 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -30.141 2.810 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.005 3.995 12 N -0.337 5.337 13 C 0.282 3.718 14 O -0.412 6.412 15 C 0.300 3.700 16 O -0.414 6.414 17 N -0.314 5.314 18 C -0.016 4.016 19 C -0.130 4.130 20 C -0.052 4.052 21 C -0.174 4.174 22 C 0.061 3.939 23 F -0.127 7.127 24 C -0.175 4.175 25 C -0.102 4.102 26 C -0.113 4.113 27 C 0.006 3.994 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.118 0.882 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.237 -30.089 2.775 30.512 hybrid contribution 0.245 0.921 0.328 1.008 sum 4.482 -29.167 3.103 29.672 Atomic orbital electron populations 1.70096 1.07748 1.27699 1.51748 1.25975 0.95766 1.03372 0.94883 0.85407 0.79154 0.78895 0.77634 1.18482 1.20564 1.20581 1.21712 0.93700 0.92167 1.50298 0.91831 1.18935 0.94345 0.92531 0.95477 1.21644 0.98647 0.92025 1.02164 1.21484 0.91507 0.84321 1.02167 1.45915 1.12297 1.04646 1.70808 1.20265 0.88592 0.84686 0.78225 1.90582 1.16971 1.83909 1.49713 1.19924 0.87876 0.84173 0.78069 1.90752 1.16740 1.84241 1.49703 1.47925 1.11599 1.04769 1.67119 1.21966 0.95454 0.86104 0.98065 1.20871 0.92633 1.03127 0.96328 1.19497 0.95736 0.94218 0.95792 1.21302 0.96913 1.00646 0.98505 1.17858 0.95660 0.90061 0.90363 1.91484 1.96689 1.62264 1.62301 1.21304 0.99074 0.97308 0.99773 1.21125 0.97501 0.96825 0.94734 1.20048 0.94003 0.98111 0.99149 1.21380 0.80865 0.99600 0.97575 0.92803 0.98459 0.98463 0.91551 0.91526 0.91527 0.91483 0.74420 0.88087 0.87935 0.90057 0.86142 0.83142 0.83058 0.82992 0.88203 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.11 -3.98 5.27 30.59 0.16 -3.82 16 11 C 0.13 4.14 5.67 86.38 0.49 4.63 16 12 N -0.68 -18.85 5.55 -464.41 -2.58 -21.43 16 13 C 0.50 13.61 7.74 87.27 0.68 14.29 16 14 O -0.53 -15.77 13.27 -3.23 -0.04 -15.81 16 15 C 0.52 12.53 7.76 87.27 0.68 13.21 16 16 O -0.54 -14.71 16.00 -3.22 -0.05 -14.76 16 17 N -0.58 -10.95 2.93 -825.84 -2.42 -13.37 16 18 C 0.10 1.36 6.42 86.18 0.55 1.91 16 19 C -0.09 -1.00 5.86 29.75 0.17 -0.83 16 20 C -0.05 -0.75 5.76 -19.85 -0.11 -0.86 16 21 C -0.16 -2.21 9.57 22.41 0.21 -1.99 16 22 C 0.08 1.32 7.30 22.31 0.16 1.48 16 23 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 24 C -0.16 -2.29 10.04 22.25 0.22 -2.06 16 25 C -0.08 -1.21 9.62 22.34 0.21 -0.99 16 26 C -0.11 -1.78 5.82 -19.81 -0.12 -1.89 16 27 C 0.13 2.20 5.57 85.64 0.48 2.68 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.42 10.43 7.96 -92.71 -0.74 9.69 16 36 H 0.10 1.41 7.10 -2.39 -0.02 1.39 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 0.65 8.11 -2.39 -0.02 0.63 16 40 H 0.15 1.55 8.05 -2.92 -0.02 1.53 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.15 1.69 8.05 -2.91 -0.02 1.67 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.13 2.72 4.79 -13.52 -0.06 2.65 16 Total: -1.00 -67.48 372.56 2.88 -64.60 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.24 Total: 14.87 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.64 Total: -2.06 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.71 Total: -90.43 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.09 Total: -30.57 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.48 2.88 -64.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286146423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.889 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds