Wall clock time and date at job start Tue Mar 31 2020 17:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00485 * 2 1 4 4 C 1.34778 * 120.00011 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00150 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00373 * 179.97438 * 4 2 1 7 7 H 1.09009 * 109.89370 * 55.93248 * 6 4 2 8 8 C 1.54382 * 109.83066 * 295.00623 * 6 4 2 9 9 C 1.55305 * 102.43395 * 219.02306 * 8 6 4 10 10 C 1.55503 * 100.69731 * 34.13038 * 9 8 6 11 11 H 1.09000 * 110.29205 * 82.50380 * 10 9 8 12 12 C 1.52995 * 110.36774 * 204.61167 * 10 9 8 13 13 N 1.46499 * 109.47026 * 182.25259 * 12 10 9 14 14 S 1.65598 * 119.99965 * 164.99582 * 13 12 10 15 15 O 1.42104 * 104.27971 * 181.06722 * 14 13 12 16 16 O 1.42097 * 104.27834 * 308.92675 * 14 13 12 17 17 C 1.81405 * 104.45017 * 65.00040 * 14 13 12 18 18 C 1.52999 * 109.47336 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47303 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99581 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00195 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99754 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47579 * 89.99947 * 23 21 19 25 25 H 1.48507 * 109.46927 * 210.00087 * 23 21 19 26 26 H 1.48504 * 109.47190 * 329.99308 * 23 21 19 27 27 O 1.43232 * 109.83403 * 176.86746 * 6 4 2 28 28 H 1.09000 * 109.46926 * 269.99877 * 1 2 3 29 29 H 1.09003 * 109.46752 * 30.00159 * 1 2 3 30 30 H 1.08999 * 109.46936 * 149.99963 * 1 2 3 31 31 H 1.08997 * 109.47109 * 270.00373 * 3 2 1 32 32 H 1.09000 * 109.46604 * 29.99718 * 3 2 1 33 33 H 1.08996 * 109.47520 * 149.99631 * 3 2 1 34 34 H 1.09002 * 110.84829 * 337.31611 * 8 6 4 35 35 H 1.09001 * 110.84937 * 100.73711 * 8 6 4 36 36 H 1.09007 * 111.12701 * 152.15066 * 9 8 6 37 37 H 1.08995 * 111.13053 * 276.31315 * 9 8 6 38 38 H 1.09004 * 109.46635 * 302.24771 * 12 10 9 39 39 H 1.08997 * 109.47601 * 62.24788 * 12 10 9 40 40 H 0.97003 * 119.99823 * 344.99393 * 13 12 10 41 41 H 1.09003 * 109.46870 * 299.99863 * 17 14 13 42 42 H 1.09004 * 109.47026 * 59.99860 * 17 14 13 43 43 H 1.08990 * 109.47460 * 300.00230 * 18 17 14 44 44 H 1.09004 * 109.46866 * 60.00143 * 18 17 14 45 45 H 0.97007 * 119.99605 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 1 4.0172 -0.5926 0.8485 8 6 4.1692 -0.5543 -1.3168 9 6 5.3908 -1.4560 -1.6432 10 6 4.8902 -2.8263 -1.1047 11 1 4.2552 -3.3140 -1.8443 12 6 6.0768 -3.7244 -0.7495 13 7 5.5842 -5.0274 -0.2958 14 16 6.6197 -6.3161 -0.1993 15 8 5.8017 -7.3907 0.2429 16 8 7.2531 -6.3528 -1.4708 17 6 7.8067 -5.8475 1.0899 18 6 8.8283 -6.9713 1.2755 19 6 9.8148 -6.5817 2.3461 20 1 9.7220 -5.6281 2.8446 21 6 10.8356 -7.4426 2.6892 22 7 10.9487 -8.6036 2.0817 23 14 12.0579 -6.9599 4.0167 24 1 11.5606 -7.4194 5.3383 25 1 13.3711 -7.5934 3.7344 26 1 12.2140 -5.4832 4.0326 27 8 4.1318 -2.5126 0.0743 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 2.3793 1.5833 -1.0276 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1384 0.5139 34 1 3.4163 -0.6218 -2.1022 35 1 4.4794 0.4798 -1.1670 36 1 5.5745 -1.4952 -2.7169 37 1 6.2792 -1.1234 -1.1065 38 1 6.7059 -3.8601 -1.6293 39 1 6.6594 -3.2593 0.0456 40 1 4.6516 -5.1353 -0.0519 41 1 8.3215 -4.9331 0.7948 42 1 7.2771 -5.6799 2.0278 43 1 8.3134 -7.8854 1.5707 44 1 9.3579 -7.1393 0.3377 45 1 11.6668 -9.2094 2.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341208740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:06 Heat of formation + Delta-G solvation = -154.862853 kcal Electronic energy + Delta-G solvation = -27063.890905 eV Core-core repulsion = 23015.758581 eV Total energy + Delta-G solvation = -4048.132324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91466 -38.97245 -36.51427 -35.98234 -35.39772 -35.04139 -33.84754 -32.62446 -31.11448 -30.75545 -28.38967 -27.01573 -25.55455 -25.13460 -22.54897 -21.88364 -21.50170 -19.76280 -18.79337 -18.11069 -17.41778 -16.90940 -16.59629 -16.53342 -16.20967 -16.06044 -15.46709 -15.25773 -14.67792 -14.51427 -14.38770 -13.94478 -13.58298 -13.40859 -13.23896 -13.15980 -13.00153 -12.90168 -12.55402 -12.47304 -12.34729 -12.21782 -12.00880 -11.70003 -11.51482 -11.47444 -11.41930 -11.05661 -10.99851 -10.92038 -10.56050 -10.38150 -10.33606 -9.75308 -9.60346 -9.43353 -9.16471 -8.95800 -8.47268 -6.09332 -4.14609 0.88150 2.20973 2.42044 3.15312 3.28096 3.34038 3.36619 3.45107 3.85984 4.02502 4.23001 4.32584 4.41823 4.46619 4.58998 4.62287 4.75094 4.80569 4.81917 4.91140 4.92324 5.06108 5.11383 5.17226 5.20359 5.25782 5.35375 5.38746 5.46154 5.50595 5.65316 5.73790 5.79766 5.94261 6.03179 6.54631 6.55316 6.86682 7.22736 7.34881 7.41520 7.78762 7.83801 8.21447 8.88792 9.49795 11.01719 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002387 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.825070 B =11725.267842 C =12315.883117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.499 3.501 5 O -0.516 6.516 6 C 0.067 3.933 7 H 0.108 0.892 8 C -0.144 4.144 9 C -0.149 4.149 10 C 0.071 3.929 11 H 0.084 0.916 12 C 0.121 3.879 13 N -1.125 6.125 14 S 2.594 3.406 15 O -0.966 6.966 16 O -0.970 6.970 17 C -0.590 4.590 18 C 0.027 3.973 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 O -0.341 6.341 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.418 0.582 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 25.354 -7.344 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.361 5.361 3 C -0.068 4.068 4 C 0.285 3.715 5 O -0.390 6.390 6 C 0.005 3.995 7 H 0.125 0.875 8 C -0.182 4.182 9 C -0.187 4.187 10 C 0.013 3.987 11 H 0.101 0.899 12 C -0.006 4.006 13 N -0.882 5.882 14 S 2.692 3.308 15 O -0.957 6.957 16 O -0.959 6.959 17 C -0.723 4.723 18 C -0.012 4.012 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.529 5.529 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 O -0.259 6.259 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.098 23.692 -7.800 30.241 hybrid contribution 0.429 0.983 1.230 1.632 sum -16.668 24.675 -6.570 30.494 Atomic orbital electron populations 1.21646 0.78951 1.03154 1.02009 1.47749 1.07176 1.06283 1.74890 1.21933 0.97439 0.85377 1.02096 1.21149 0.90511 0.83452 0.76342 1.90742 1.69849 1.30870 1.47532 1.22622 0.90481 0.86228 1.00172 0.87468 1.23144 0.98310 1.00783 0.96000 1.23407 0.98331 0.93686 1.03288 1.23424 0.92549 0.95238 0.87534 0.89853 1.21416 0.95308 0.83157 1.00743 1.55704 1.24242 1.24419 1.83881 1.05485 0.75270 0.73200 0.76867 1.93557 1.66607 1.51703 1.83805 1.93528 1.77433 1.85813 1.39168 1.30444 1.14603 1.11241 1.16019 1.18963 0.92284 0.90644 0.99268 1.21009 1.11249 1.03490 1.20098 0.92069 1.25075 0.97852 0.94940 0.96710 1.69962 1.32583 1.08709 1.41607 0.86467 0.80383 0.78636 0.81756 1.20491 1.21046 1.19806 1.88588 1.69793 1.27324 1.40177 0.92634 0.91171 0.90474 0.92189 0.90760 0.90763 0.90036 0.88769 0.88767 0.89077 0.88781 0.90884 0.74781 0.86417 0.86034 0.94822 0.94821 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.44 59.85 0.62 1.14 16 2 N -0.62 -4.37 3.27 -189.51 -0.62 -4.99 16 3 C 0.07 0.22 9.07 59.85 0.54 0.76 16 4 C 0.50 5.24 6.95 -10.99 -0.08 5.16 16 5 O -0.52 -7.94 16.10 -14.10 -0.23 -8.16 16 6 C 0.07 0.56 3.08 -27.16 -0.08 0.48 16 7 H 0.11 0.68 7.20 -51.92 -0.37 0.31 16 8 C -0.14 -0.76 5.28 -24.78 -0.13 -0.89 16 9 C -0.15 -0.91 6.61 -24.18 -0.16 -1.07 16 10 C 0.07 0.71 3.52 -25.40 -0.09 0.62 16 11 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 12 C 0.12 1.38 5.86 -4.04 -0.02 1.35 16 13 N -1.12 -16.07 5.87 -10.62 -0.06 -16.13 16 14 S 2.59 48.11 5.46 -107.50 -0.59 47.52 16 15 O -0.97 -21.19 18.08 -57.54 -1.04 -22.23 16 16 O -0.97 -20.29 17.50 -57.54 -1.01 -21.30 16 17 C -0.59 -11.51 6.01 37.16 0.22 -11.29 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 23 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 O -0.34 -4.05 10.15 -54.89 -0.56 -4.60 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 30 H 0.08 0.61 7.42 -51.93 -0.39 0.23 16 31 H 0.06 0.10 8.00 -51.93 -0.42 -0.31 16 32 H 0.07 0.12 8.07 -51.93 -0.42 -0.30 16 33 H 0.07 0.15 5.97 -51.93 -0.31 -0.16 16 34 H 0.08 0.46 7.84 -51.93 -0.41 0.05 16 35 H 0.09 0.23 7.43 -51.93 -0.39 -0.16 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 38 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.42 5.81 8.55 -34.47 -0.29 5.52 16 41 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 42 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -40.06 382.45 -9.50 -49.55 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.15 Total: 0.70 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 0.28 Total: -16.45 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.05 Total: -47.14 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -2.83 Total: -56.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.59 Total: 47.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.06 -9.50 -49.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341208740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.310 kcal (2) G-P(sol) polarization free energy of solvation -40.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds