Wall clock time and date at job start Tue Mar 31 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00485 * 2 1 4 4 C 1.34778 * 120.00011 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00150 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00373 * 179.97438 * 4 2 1 7 7 H 1.09009 * 109.89370 * 55.93248 * 6 4 2 8 8 C 1.54382 * 109.83066 * 295.00623 * 6 4 2 9 9 C 1.55305 * 102.43395 * 219.02306 * 8 6 4 10 10 C 1.55503 * 100.69731 * 34.13038 * 9 8 6 11 11 H 1.09000 * 110.29205 * 82.50380 * 10 9 8 12 12 C 1.52995 * 110.36774 * 204.61167 * 10 9 8 13 13 N 1.46499 * 109.47026 * 182.25259 * 12 10 9 14 14 S 1.65598 * 119.99965 * 164.99582 * 13 12 10 15 15 O 1.42104 * 104.27971 * 181.06722 * 14 13 12 16 16 O 1.42097 * 104.27834 * 308.92675 * 14 13 12 17 17 C 1.81405 * 104.45017 * 65.00040 * 14 13 12 18 18 C 1.52999 * 109.47336 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47303 * 179.97438 * 18 17 14 20 20 H 1.08004 * 119.99581 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00195 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99754 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47579 * 89.99947 * 23 21 19 25 25 H 1.48507 * 109.46927 * 210.00087 * 23 21 19 26 26 H 1.48504 * 109.47190 * 329.99308 * 23 21 19 27 27 O 1.43232 * 109.83403 * 176.86746 * 6 4 2 28 28 H 1.09000 * 109.46926 * 269.99877 * 1 2 3 29 29 H 1.09003 * 109.46752 * 30.00159 * 1 2 3 30 30 H 1.08999 * 109.46936 * 149.99963 * 1 2 3 31 31 H 1.08997 * 109.47109 * 270.00373 * 3 2 1 32 32 H 1.09000 * 109.46604 * 29.99718 * 3 2 1 33 33 H 1.08996 * 109.47520 * 149.99631 * 3 2 1 34 34 H 1.09002 * 110.84829 * 337.31611 * 8 6 4 35 35 H 1.09001 * 110.84937 * 100.73711 * 8 6 4 36 36 H 1.09007 * 111.12701 * 152.15066 * 9 8 6 37 37 H 1.08995 * 111.13053 * 276.31315 * 9 8 6 38 38 H 1.09004 * 109.46635 * 302.24771 * 12 10 9 39 39 H 1.08997 * 109.47601 * 62.24788 * 12 10 9 40 40 H 0.97003 * 119.99823 * 344.99393 * 13 12 10 41 41 H 1.09003 * 109.46870 * 299.99863 * 17 14 13 42 42 H 1.09004 * 109.47026 * 59.99860 * 17 14 13 43 43 H 1.08990 * 109.47460 * 300.00230 * 18 17 14 44 44 H 1.09004 * 109.46866 * 60.00143 * 18 17 14 45 45 H 0.97007 * 119.99605 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 1 4.0172 -0.5926 0.8485 8 6 4.1692 -0.5543 -1.3168 9 6 5.3908 -1.4560 -1.6432 10 6 4.8902 -2.8263 -1.1047 11 1 4.2552 -3.3140 -1.8443 12 6 6.0768 -3.7244 -0.7495 13 7 5.5842 -5.0274 -0.2958 14 16 6.6197 -6.3161 -0.1993 15 8 5.8017 -7.3907 0.2429 16 8 7.2531 -6.3528 -1.4708 17 6 7.8067 -5.8475 1.0899 18 6 8.8283 -6.9713 1.2755 19 6 9.8148 -6.5817 2.3461 20 1 9.7220 -5.6281 2.8446 21 6 10.8356 -7.4426 2.6892 22 7 10.9487 -8.6036 2.0817 23 14 12.0579 -6.9599 4.0167 24 1 11.5606 -7.4194 5.3383 25 1 13.3711 -7.5934 3.7344 26 1 12.2140 -5.4832 4.0326 27 8 4.1318 -2.5126 0.0743 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 2.3793 1.5833 -1.0276 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1384 0.5139 34 1 3.4163 -0.6218 -2.1022 35 1 4.4794 0.4798 -1.1670 36 1 5.5745 -1.4952 -2.7169 37 1 6.2792 -1.1234 -1.1065 38 1 6.7059 -3.8601 -1.6293 39 1 6.6594 -3.2593 0.0456 40 1 4.6516 -5.1353 -0.0519 41 1 8.3215 -4.9331 0.7948 42 1 7.2771 -5.6799 2.0278 43 1 8.3134 -7.8854 1.5707 44 1 9.3579 -7.1393 0.3377 45 1 11.6668 -9.2094 2.3234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341208740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:05 Heat of formation + Delta-G solvation = -187.202618 kcal Electronic energy + Delta-G solvation = -27065.293262 eV Core-core repulsion = 23015.758581 eV Total energy + Delta-G solvation = -4049.534681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57612 -39.68220 -38.15074 -37.01491 -36.63780 -36.12195 -35.87873 -33.19685 -33.10902 -31.49034 -28.85412 -27.60275 -27.57000 -25.80984 -23.59572 -23.07805 -22.47392 -20.37546 -20.23464 -19.07367 -18.73547 -18.26489 -17.53811 -17.43388 -17.29736 -16.91447 -16.85691 -16.51215 -16.21463 -15.84106 -15.13162 -14.93052 -14.62854 -14.44016 -14.19101 -13.92793 -13.84875 -13.68489 -13.59631 -13.40020 -13.32309 -13.19332 -13.10111 -12.92167 -12.91157 -12.89078 -12.76413 -12.57258 -12.23004 -12.12090 -11.91985 -11.89573 -11.71497 -11.31376 -11.16403 -10.63473 -10.37734 -10.30873 -9.71178 -8.24498 -6.38487 -0.65726 1.41816 1.44094 1.50187 1.55065 1.83689 1.91270 2.39369 2.77308 2.82784 3.08852 3.26687 3.33817 3.51907 3.73617 3.93613 4.00186 4.07517 4.15408 4.17358 4.28315 4.35030 4.42291 4.48702 4.55801 4.62982 4.76048 4.78367 4.80485 4.83316 4.89084 4.97433 5.00088 5.02787 5.23170 5.29013 5.30404 5.46988 5.69894 5.89180 6.06042 6.08282 6.31098 6.75207 7.11352 7.31466 8.87829 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002387 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.825070 B =11725.267842 C =12315.883117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.618 5.618 3 C 0.064 3.936 4 C 0.487 3.513 5 O -0.583 6.583 6 C 0.060 3.940 7 H 0.132 0.868 8 C -0.133 4.133 9 C -0.141 4.141 10 C 0.066 3.934 11 H 0.067 0.933 12 C 0.107 3.893 13 N -1.111 6.111 14 S 2.621 3.379 15 O -1.005 7.005 16 O -0.994 6.994 17 C -0.585 4.585 18 C 0.019 3.981 19 C -0.537 4.537 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.935 5.935 23 Si 0.976 3.024 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.255 1.255 27 O -0.374 6.374 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.421 0.579 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.003 0.997 44 H 0.010 0.990 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.158 29.701 -6.872 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.353 5.353 3 C -0.077 4.077 4 C 0.276 3.724 5 O -0.463 6.463 6 C -0.001 4.001 7 H 0.150 0.850 8 C -0.171 4.171 9 C -0.179 4.179 10 C 0.008 3.992 11 H 0.085 0.915 12 C -0.019 4.019 13 N -0.872 5.872 14 S 2.718 3.282 15 O -0.995 6.995 16 O -0.984 6.984 17 C -0.717 4.717 18 C -0.020 4.020 19 C -0.576 4.576 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.179 1.179 27 O -0.292 6.292 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.257 0.743 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.308 28.113 -7.330 33.317 hybrid contribution 0.075 -0.273 1.050 1.088 sum -16.232 27.840 -6.280 32.833 Atomic orbital electron populations 1.21737 0.78857 1.03444 1.02171 1.47915 1.07632 1.06899 1.72834 1.22283 0.97964 0.83565 1.03895 1.21732 0.91665 0.83459 0.75570 1.90704 1.71182 1.33332 1.51068 1.22928 0.88934 0.85361 1.02885 0.85049 1.23183 0.97518 1.02444 0.93910 1.23451 0.99150 0.90987 1.04286 1.23447 0.91697 0.97093 0.87005 0.91497 1.21825 0.96492 0.81755 1.01809 1.55304 1.23456 1.24805 1.83664 1.04426 0.74782 0.73119 0.75879 1.93497 1.67521 1.54335 1.84194 1.93490 1.78227 1.86431 1.40237 1.30313 1.13771 1.10030 1.17606 1.18834 0.93408 0.91883 0.97828 1.21518 1.11577 1.04111 1.20422 0.90499 1.26153 1.00216 0.94791 0.99315 1.70115 1.33625 1.10132 1.43587 0.85283 0.77320 0.79176 0.78272 1.19851 1.20838 1.17888 1.88550 1.70244 1.29517 1.40909 0.92580 0.87862 0.93136 0.90203 0.89012 0.89367 0.90581 0.84813 0.87278 0.87267 0.88018 0.88818 0.74341 0.83404 0.84286 0.97857 0.97177 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.44 127.77 1.33 2.26 16 2 N -0.62 -7.65 3.27 -871.88 -2.85 -10.51 16 3 C 0.06 0.13 9.07 127.77 1.16 1.29 16 4 C 0.49 10.05 6.95 87.66 0.61 10.66 16 5 O -0.58 -18.95 16.10 15.75 0.25 -18.70 16 6 C 0.06 0.88 3.08 30.32 0.09 0.98 16 7 H 0.13 1.24 7.20 -2.38 -0.02 1.22 16 8 C -0.13 -0.92 5.28 31.86 0.17 -0.75 16 9 C -0.14 -1.24 6.61 32.25 0.21 -1.03 16 10 C 0.07 1.23 3.52 31.45 0.11 1.34 16 11 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 12 C 0.11 2.25 5.86 86.38 0.51 2.76 16 13 N -1.11 -31.29 5.87 -187.50 -1.10 -32.39 16 14 S 2.62 98.22 5.46 -56.49 -0.31 97.91 16 15 O -1.01 -45.49 18.08 -127.65 -2.31 -47.80 16 16 O -0.99 -42.05 17.50 -127.65 -2.23 -44.28 16 17 C -0.58 -22.49 6.01 71.98 0.43 -22.06 16 18 C 0.02 1.03 4.98 29.85 0.15 1.18 16 19 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 20 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 21 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 22 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 23 Si 0.98 43.47 29.54 68.60 2.03 45.49 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 O -0.37 -8.54 10.15 -130.19 -1.32 -9.86 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.46 8.07 -2.39 -0.02 0.45 16 30 H 0.05 0.86 7.42 -2.39 -0.02 0.84 16 31 H 0.08 -0.09 8.00 -2.39 -0.02 -0.11 16 32 H 0.09 -0.08 8.07 -2.39 -0.02 -0.10 16 33 H 0.09 -0.04 5.97 -2.39 -0.01 -0.05 16 34 H 0.08 0.64 7.84 -2.39 -0.02 0.62 16 35 H 0.13 -0.11 7.43 -2.39 -0.02 -0.13 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.11 0.61 8.07 -2.39 -0.02 0.59 16 38 H 0.10 1.99 7.69 -2.39 -0.02 1.98 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.42 11.84 8.55 -96.74 -0.83 11.01 16 41 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16 42 H 0.14 4.84 8.14 -2.39 -0.02 4.83 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -91.79 382.45 -1.93 -93.72 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.16 Total: 16.65 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 5.47 Total: -33.03 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.67 Total: -100.11 kcal Atomic # 8 Polarization: -115.03 SS G_CDS: -5.61 Total: -120.64 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 98.22 SS G_CDS: -0.31 Total: 97.91 kcal Total: -91.79 -1.93 -93.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341208740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.484 kcal (2) G-P(sol) polarization free energy of solvation -91.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds