Wall clock time and date at job start Tue Mar 31 2020 17:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35753 * 116.99717 * 2 1 4 4 C 1.39383 * 120.06086 * 180.02562 * 3 2 1 5 5 C 1.38425 * 117.98401 * 179.97438 * 4 3 2 6 6 C 1.39540 * 117.95567 * 359.97438 * 5 4 3 7 7 N 1.39443 * 120.08690 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99436 * 174.61387 * 7 6 5 9 9 O 1.21367 * 120.00413 * 3.98738 * 8 7 6 10 10 C 1.49360 * 119.99506 * 183.98888 * 8 7 6 11 11 O 1.21356 * 120.00178 * 357.74881 * 10 8 7 12 12 N 1.34776 * 119.99779 * 177.74673 * 10 8 7 13 13 C 1.46499 * 119.99957 * 354.58550 * 12 10 8 14 14 C 1.50699 * 109.47514 * 84.42172 * 13 12 10 15 15 H 1.08006 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00594 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99768 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00266 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47484 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46993 * 119.99978 * 18 16 14 21 21 H 1.48494 * 109.47477 * 239.99817 * 18 16 14 22 22 C 1.46497 * 119.99933 * 174.58037 * 12 10 8 23 23 C 1.53000 * 109.46807 * 94.68594 * 22 12 10 24 24 C 1.53004 * 117.49876 * 243.62119 * 23 22 12 25 25 C 1.52997 * 117.49566 * 174.99764 * 23 22 12 26 26 N 1.32314 * 119.81835 * 359.97438 * 6 5 4 27 27 N 1.28348 * 122.16169 * 359.97438 * 26 6 5 28 28 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47761 * 299.99875 * 1 2 3 30 30 H 1.09007 * 109.47303 * 60.00262 * 1 2 3 31 31 H 1.08007 * 121.00737 * 359.95314 * 4 3 2 32 32 H 1.08005 * 121.02162 * 179.72597 * 5 4 3 33 33 H 0.97001 * 120.00376 * 354.61343 * 7 6 5 34 34 H 1.09000 * 109.47332 * 204.41887 * 13 12 10 35 35 H 1.09004 * 109.47328 * 324.41808 * 13 12 10 36 36 H 0.96994 * 120.00361 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.47205 * 214.68205 * 22 12 10 38 38 H 1.08992 * 109.47523 * 334.68611 * 22 12 10 39 39 H 1.08998 * 115.55189 * 29.32936 * 23 22 12 40 40 H 1.08996 * 117.49505 * 359.97438 * 24 23 22 41 41 H 1.08993 * 117.49792 * 145.02304 * 24 23 22 42 42 H 1.09001 * 117.50247 * 214.97675 * 25 23 22 43 43 H 1.09001 * 117.50487 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.4371 1.2841 -0.0005 5 6 4.0203 2.5395 -0.0011 6 6 3.1781 3.6521 -0.0016 7 7 3.7183 4.9376 -0.0016 8 6 2.9079 6.0089 -0.1116 9 8 1.7038 5.8589 -0.1378 10 6 3.4917 7.3807 -0.2014 11 8 4.6937 7.5343 -0.1341 12 7 2.6837 8.4481 -0.3571 13 6 1.2454 8.2549 -0.5573 14 6 0.5678 8.1033 0.7803 15 1 1.1504 8.1461 1.6887 16 6 -0.7957 7.9089 0.8444 17 7 -1.5051 7.8562 -0.2617 18 14 -1.6353 7.7203 2.5023 19 1 -0.6225 7.8172 3.5841 20 1 -2.6441 8.7968 2.6715 21 1 -2.3069 6.3976 2.5695 22 6 3.2437 9.8015 -0.3261 23 6 3.5361 10.2652 -1.7545 24 6 4.9953 10.5401 -2.1232 25 6 4.0188 11.7045 -1.9450 26 7 1.8658 3.4838 -0.0021 27 7 1.3263 2.3192 -0.0026 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.0421 0.3894 -0.0002 32 1 5.0943 2.6543 0.0029 33 1 4.6771 5.0609 0.0776 34 1 0.8318 9.1185 -1.0782 35 1 1.0787 7.3573 -1.1528 36 1 -2.4642 7.7191 -0.2167 37 1 2.5276 10.4805 0.1370 38 1 4.1680 9.7991 0.2515 39 1 2.8923 9.8439 -2.5266 40 1 5.7469 10.3910 -1.3481 41 1 5.3118 10.2996 -3.1381 42 1 3.6930 12.2300 -2.8427 43 1 4.1285 12.3209 -1.0528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342315604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:10 Heat of formation + Delta-G solvation = 18.884435 kcal Electronic energy + Delta-G solvation = -28883.576538 eV Core-core repulsion = 24739.827262 eV Total energy + Delta-G solvation = -4143.749276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33008 -40.10456 -38.68361 -37.83753 -36.89582 -35.47133 -34.26599 -33.02407 -32.33349 -30.40952 -28.01337 -27.55754 -26.80886 -25.09345 -23.98139 -23.12489 -22.38035 -22.08119 -20.51067 -19.52926 -18.45789 -17.95286 -17.52260 -16.62217 -16.49175 -16.27475 -16.22647 -15.22206 -15.08667 -14.64634 -14.54440 -14.34698 -14.28167 -14.07412 -13.87931 -13.80216 -13.27275 -12.96763 -12.29677 -12.05488 -12.01415 -11.83244 -11.68512 -11.44615 -11.34640 -11.30101 -10.89204 -10.80259 -10.71571 -10.46418 -10.25633 -9.99206 -9.95004 -9.69917 -9.57747 -9.46240 -8.63114 -8.29631 -8.20174 -7.86621 -5.96524 -3.98021 0.75540 1.03219 2.18594 2.57329 2.95615 3.36314 3.44834 3.46716 3.57205 3.79910 3.98220 4.07755 4.21236 4.46117 4.53700 4.68696 4.76914 4.99259 5.02664 5.17288 5.18640 5.26481 5.28813 5.29274 5.41717 5.53649 5.65551 5.68576 5.79859 5.80663 5.97568 6.07644 6.12408 6.30328 6.47237 6.49253 6.70464 7.00438 7.24423 7.38577 7.45766 7.91148 8.08372 8.22602 8.31590 8.64992 8.90022 9.00820 9.64808 11.12815 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.004118 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.949729 B = 6796.961438 C = 9071.327659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.307 6.307 3 C 0.223 3.777 4 C -0.107 4.107 5 C -0.119 4.119 6 C 0.280 3.720 7 N -0.641 5.641 8 C 0.470 3.530 9 O -0.373 6.373 10 C 0.512 3.488 11 O -0.560 6.560 12 N -0.555 5.555 13 C 0.229 3.771 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.073 3.927 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.283 1.283 22 C 0.147 3.853 23 C -0.162 4.162 24 C -0.175 4.175 25 C -0.178 4.178 26 N -0.188 5.188 27 N -0.265 5.265 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.423 0.577 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.024 -8.376 -2.031 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.035 3.965 4 C -0.137 4.137 5 C -0.151 4.151 6 C 0.040 3.960 7 N -0.294 5.294 8 C 0.250 3.750 9 O -0.233 6.233 10 C 0.294 3.706 11 O -0.441 6.441 12 N -0.284 5.284 13 C 0.110 3.890 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.130 4.130 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.209 1.209 22 C 0.024 3.976 23 C -0.181 4.181 24 C -0.212 4.212 25 C -0.216 4.216 26 N -0.038 5.038 27 N -0.121 5.121 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.261 0.739 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.038 -7.889 -2.106 12.939 hybrid contribution 1.008 -0.696 0.934 1.540 sum 11.046 -8.584 -1.172 14.039 Atomic orbital electron populations 1.22968 0.76738 1.03099 1.03198 1.86175 1.23198 1.23420 1.88369 1.21508 0.90939 0.87379 0.96652 1.21282 0.92234 0.98941 1.01203 1.21777 1.01663 0.90475 1.01205 1.20142 0.91994 0.86261 0.97590 1.43237 1.11906 1.01872 1.72350 1.20597 0.87647 0.85842 0.80948 1.91147 1.12077 1.84056 1.36000 1.19660 0.86200 0.85739 0.79007 1.90640 1.14381 1.86367 1.52730 1.48215 1.11334 1.03954 1.64918 1.19957 0.71611 0.98967 0.98433 1.21171 0.92400 1.49967 0.91716 0.92811 1.24762 0.97166 0.94744 0.96333 1.69910 1.06795 1.49443 1.26525 0.86531 0.79422 0.77674 0.84266 1.20056 1.21186 1.20858 1.21040 0.99574 0.83048 0.93964 1.22742 0.97556 0.98477 0.99302 1.22975 0.93101 1.02765 1.02345 1.22914 1.04511 0.91111 1.03053 1.73562 1.07645 1.12121 1.10491 1.73217 1.31179 0.93754 1.13942 0.88430 0.91884 0.91851 0.82492 0.82384 0.73851 0.94751 0.91926 0.92917 0.89372 0.90295 0.87563 0.88684 0.89418 0.89027 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.40 101.05 1.05 1.43 16 2 O -0.31 -3.91 10.49 -18.97 -0.20 -4.11 16 3 C 0.22 3.20 7.57 -16.96 -0.13 3.07 16 4 C -0.11 -1.17 10.15 -39.09 -0.40 -1.56 16 5 C -0.12 -1.31 10.06 -39.03 -0.39 -1.70 16 6 C 0.28 4.47 7.51 -154.51 -1.16 3.31 16 7 N -0.64 -10.27 5.39 -11.71 -0.06 -10.33 16 8 C 0.47 9.66 7.68 -11.63 -0.09 9.57 16 9 O -0.37 -9.24 10.42 5.48 0.06 -9.18 16 10 C 0.51 10.44 7.68 -11.63 -0.09 10.35 16 11 O -0.56 -11.02 16.04 5.49 0.09 -10.93 16 12 N -0.55 -11.65 2.47 -175.61 -0.43 -12.08 16 13 C 0.23 5.69 4.78 -5.19 -0.02 5.67 16 14 C -0.51 -14.13 7.78 -34.44 -0.27 -14.40 16 15 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 16 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 22 C 0.15 2.58 5.68 -4.04 -0.02 2.56 16 23 C -0.16 -2.50 6.01 -90.62 -0.54 -3.04 16 24 C -0.17 -2.32 10.18 -26.73 -0.27 -2.59 16 25 C -0.18 -2.22 10.25 -26.73 -0.27 -2.50 16 26 N -0.19 -3.76 9.07 31.29 0.28 -3.48 16 27 N -0.26 -4.82 10.39 30.52 0.32 -4.51 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.42 5.30 8.19 -40.82 -0.33 4.96 16 34 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.06 1.72 5.86 -51.93 -0.30 1.41 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.08 1.34 7.10 -51.93 -0.37 0.97 16 39 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 40 H 0.09 1.26 8.03 -51.93 -0.42 0.85 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -34.47 374.08 -6.92 -41.38 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.61 Total: 3.64 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -2.71 Total: 12.13 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.84 Total: -55.90 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.47 -6.92 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342315604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.267 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds