Wall clock time and date at job start Tue Mar 31 2020 17:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35753 * 116.99717 * 2 1 4 4 C 1.39383 * 120.06086 * 180.02562 * 3 2 1 5 5 C 1.38425 * 117.98401 * 179.97438 * 4 3 2 6 6 C 1.39540 * 117.95567 * 359.97438 * 5 4 3 7 7 N 1.39443 * 120.08690 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99436 * 174.61387 * 7 6 5 9 9 O 1.21367 * 120.00413 * 3.98738 * 8 7 6 10 10 C 1.49360 * 119.99506 * 183.98888 * 8 7 6 11 11 O 1.21356 * 120.00178 * 357.74881 * 10 8 7 12 12 N 1.34776 * 119.99779 * 177.74673 * 10 8 7 13 13 C 1.46499 * 119.99957 * 354.58550 * 12 10 8 14 14 C 1.50699 * 109.47514 * 84.42172 * 13 12 10 15 15 H 1.08006 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00594 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99768 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00266 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47484 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46993 * 119.99978 * 18 16 14 21 21 H 1.48494 * 109.47477 * 239.99817 * 18 16 14 22 22 C 1.46497 * 119.99933 * 174.58037 * 12 10 8 23 23 C 1.53000 * 109.46807 * 94.68594 * 22 12 10 24 24 C 1.53004 * 117.49876 * 243.62119 * 23 22 12 25 25 C 1.52997 * 117.49566 * 174.99764 * 23 22 12 26 26 N 1.32314 * 119.81835 * 359.97438 * 6 5 4 27 27 N 1.28348 * 122.16169 * 359.97438 * 26 6 5 28 28 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47761 * 299.99875 * 1 2 3 30 30 H 1.09007 * 109.47303 * 60.00262 * 1 2 3 31 31 H 1.08007 * 121.00737 * 359.95314 * 4 3 2 32 32 H 1.08005 * 121.02162 * 179.72597 * 5 4 3 33 33 H 0.97001 * 120.00376 * 354.61343 * 7 6 5 34 34 H 1.09000 * 109.47332 * 204.41887 * 13 12 10 35 35 H 1.09004 * 109.47328 * 324.41808 * 13 12 10 36 36 H 0.96994 * 120.00361 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.47205 * 214.68205 * 22 12 10 38 38 H 1.08992 * 109.47523 * 334.68611 * 22 12 10 39 39 H 1.08998 * 115.55189 * 29.32936 * 23 22 12 40 40 H 1.08996 * 117.49505 * 359.97438 * 24 23 22 41 41 H 1.08993 * 117.49792 * 145.02304 * 24 23 22 42 42 H 1.09001 * 117.50247 * 214.97675 * 25 23 22 43 43 H 1.09001 * 117.50487 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 3.4371 1.2841 -0.0005 5 6 4.0203 2.5395 -0.0011 6 6 3.1781 3.6521 -0.0016 7 7 3.7183 4.9376 -0.0016 8 6 2.9079 6.0089 -0.1116 9 8 1.7038 5.8589 -0.1378 10 6 3.4917 7.3807 -0.2014 11 8 4.6937 7.5343 -0.1341 12 7 2.6837 8.4481 -0.3571 13 6 1.2454 8.2549 -0.5573 14 6 0.5678 8.1033 0.7803 15 1 1.1504 8.1461 1.6887 16 6 -0.7957 7.9089 0.8444 17 7 -1.5051 7.8562 -0.2617 18 14 -1.6353 7.7203 2.5023 19 1 -0.6225 7.8172 3.5841 20 1 -2.6441 8.7968 2.6715 21 1 -2.3069 6.3976 2.5695 22 6 3.2437 9.8015 -0.3261 23 6 3.5361 10.2652 -1.7545 24 6 4.9953 10.5401 -2.1232 25 6 4.0188 11.7045 -1.9450 26 7 1.8658 3.4838 -0.0021 27 7 1.3263 2.3192 -0.0026 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.0421 0.3894 -0.0002 32 1 5.0943 2.6543 0.0029 33 1 4.6771 5.0609 0.0776 34 1 0.8318 9.1185 -1.0782 35 1 1.0787 7.3573 -1.1528 36 1 -2.4642 7.7191 -0.2167 37 1 2.5276 10.4805 0.1370 38 1 4.1680 9.7991 0.2515 39 1 2.8923 9.8439 -2.5266 40 1 5.7469 10.3910 -1.3481 41 1 5.3118 10.2996 -3.1381 42 1 3.6930 12.2300 -2.8427 43 1 4.1285 12.3209 -1.0528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342315604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:09 Heat of formation + Delta-G solvation = -6.629423 kcal Electronic energy + Delta-G solvation = -28884.682901 eV Core-core repulsion = 24739.827262 eV Total energy + Delta-G solvation = -4144.855640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53561 -41.59790 -39.95137 -39.11695 -38.24174 -36.95924 -35.81270 -34.40103 -34.07033 -31.63992 -29.75294 -28.63487 -28.43277 -26.42606 -25.22114 -24.84940 -23.78037 -23.14255 -21.80483 -20.92715 -19.54994 -19.28243 -18.85697 -18.59116 -17.97175 -17.70184 -17.38998 -16.82131 -16.67019 -16.09484 -15.92732 -15.64536 -15.51418 -15.19998 -15.08852 -14.92001 -14.63838 -14.44980 -14.27128 -13.70480 -13.40718 -13.05231 -12.93323 -12.86388 -12.84789 -12.63001 -12.55807 -12.34733 -12.30088 -11.97318 -11.87430 -11.72887 -11.29671 -11.00974 -10.83466 -10.70028 -10.51948 -10.05148 -9.65710 -9.48101 -8.13793 -6.20733 -0.21817 -0.14495 0.65072 1.21281 1.34406 1.39162 1.46996 1.93606 2.20134 2.35028 2.48565 2.61758 2.94689 3.11128 3.21683 3.28082 3.60113 3.76373 3.83808 3.93070 4.03549 4.13825 4.33725 4.35570 4.37128 4.38458 4.63337 4.68079 4.73366 4.77368 4.83219 4.85087 4.87211 5.05106 5.19730 5.28791 5.31303 5.39021 5.53833 5.76285 5.96031 6.02733 6.11694 6.30414 6.74811 6.83279 7.08857 7.45021 7.74830 8.95156 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.004118 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.949729 B = 6796.961438 C = 9071.327659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.091 4.091 5 C -0.091 4.091 6 C 0.258 3.742 7 N -0.622 5.622 8 C 0.470 3.530 9 O -0.427 6.427 10 C 0.511 3.489 11 O -0.550 6.550 12 N -0.561 5.561 13 C 0.252 3.748 14 C -0.512 4.512 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.921 5.921 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.291 1.291 22 C 0.146 3.854 23 C -0.189 4.189 24 C -0.165 4.165 25 C -0.156 4.156 26 N -0.253 5.253 27 N -0.314 5.314 28 H 0.137 0.863 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.207 0.793 32 H 0.214 0.786 33 H 0.440 0.560 34 H 0.021 0.979 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.016 -9.373 -1.505 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.207 6.207 3 C 0.030 3.970 4 C -0.120 4.120 5 C -0.122 4.122 6 C 0.017 3.983 7 N -0.276 5.276 8 C 0.250 3.750 9 O -0.290 6.290 10 C 0.293 3.707 11 O -0.431 6.431 12 N -0.291 5.291 13 C 0.132 3.868 14 C -0.551 4.551 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.561 5.561 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.217 1.217 22 C 0.024 3.976 23 C -0.208 4.208 24 C -0.202 4.202 25 C -0.193 4.193 26 N -0.102 5.102 27 N -0.169 5.169 28 H 0.154 0.846 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.224 0.776 32 H 0.231 0.769 33 H 0.282 0.718 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.087 -8.892 -1.569 15.899 hybrid contribution 0.210 -0.544 0.744 0.945 sum 13.296 -9.436 -0.825 16.325 Atomic orbital electron populations 1.23128 0.76030 1.05186 1.01897 1.86200 1.23940 1.22514 1.88045 1.22009 0.92636 0.87017 0.95381 1.21870 0.90839 1.00648 0.98667 1.22315 1.03594 0.88422 0.97829 1.20459 0.92027 0.87131 0.98645 1.42941 1.12210 1.01280 1.71215 1.20718 0.87404 0.86750 0.80141 1.91139 1.14138 1.84808 1.38940 1.19733 0.86292 0.85796 0.78847 1.90625 1.13671 1.86362 1.52406 1.48132 1.09925 1.05649 1.65380 1.19366 0.73780 0.96932 0.96717 1.21347 0.92541 1.48859 0.92328 0.93700 1.25489 0.98027 0.94829 0.99322 1.70012 1.06955 1.50876 1.28288 0.85659 0.78691 0.77437 0.80724 1.19569 1.19537 1.21716 1.21187 0.99422 0.81234 0.95711 1.22564 0.99359 1.01573 0.97350 1.23037 0.91651 1.02548 1.02964 1.23038 1.02271 0.89771 1.04222 1.73343 1.10362 1.13532 1.12936 1.73046 1.32709 0.94409 1.16749 0.84550 0.93267 0.93175 0.77560 0.76890 0.71762 0.96054 0.94660 0.92944 0.89866 0.89463 0.89454 0.88420 0.88341 0.87528 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.40 113.37 1.18 1.88 16 2 O -0.30 -7.30 10.49 -90.78 -0.95 -8.25 16 3 C 0.22 6.05 7.57 84.91 0.64 6.70 16 4 C -0.09 -1.65 10.15 22.59 0.23 -1.42 16 5 C -0.09 -1.68 10.06 22.63 0.23 -1.45 16 6 C 0.26 8.11 7.51 133.04 1.00 9.11 16 7 N -0.62 -19.61 5.39 -309.32 -1.67 -21.28 16 8 C 0.47 19.89 7.68 87.24 0.67 20.56 16 9 O -0.43 -22.38 10.42 -3.30 -0.03 -22.41 16 10 C 0.51 21.12 7.68 87.24 0.67 21.78 16 11 O -0.55 -21.09 16.04 -3.27 -0.05 -21.14 16 12 N -0.56 -24.26 2.47 -827.85 -2.05 -26.31 16 13 C 0.25 13.21 4.78 85.63 0.41 13.62 16 14 C -0.51 -29.24 7.78 25.60 0.20 -29.04 16 15 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 16 C 0.02 1.33 5.46 84.65 0.46 1.79 16 17 N -0.92 -56.65 13.29 21.45 0.28 -56.37 16 18 Si 0.95 47.13 29.54 68.60 2.03 49.16 16 19 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 22 C 0.15 5.17 5.68 86.38 0.49 5.66 16 23 C -0.19 -5.78 6.01 -10.79 -0.06 -5.85 16 24 C -0.17 -4.07 10.18 30.60 0.31 -3.75 16 25 C -0.16 -3.56 10.25 30.60 0.31 -3.24 16 26 N -0.25 -10.57 9.07 -54.90 -0.50 -11.07 16 27 N -0.31 -11.87 10.39 -170.21 -1.77 -13.64 16 28 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.05 1.21 8.11 -2.38 -0.02 1.19 16 31 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.44 10.14 8.19 -92.71 -0.76 9.38 16 34 H 0.02 1.16 8.03 -2.39 -0.02 1.14 16 35 H 0.04 2.08 5.86 -2.38 -0.01 2.06 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.08 2.96 8.11 -2.38 -0.02 2.94 16 38 H 0.09 2.90 7.10 -2.39 -0.02 2.88 16 39 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.10 2.37 8.03 -2.39 -0.02 2.35 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.10 374.08 2.33 -78.77 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.30 Total: 16.18 kcal Atomic # 6 Polarization: 29.61 SS G_CDS: 6.74 Total: 36.35 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.69 Total: -128.66 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -1.04 Total: -51.80 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -81.10 2.33 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342315604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.143 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds