Wall clock time and date at job start Tue Mar 31 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48505 * 109.46552 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47385 * 29.99925 * 3 2 1 6 6 H 1.48493 * 109.47264 * 150.00241 * 3 2 1 7 7 C 1.38946 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00180 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.34780 * 120.00024 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00139 * 359.73283 * 10 9 7 12 12 C 1.50698 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47222 * 179.72929 * 12 10 9 14 14 C 1.34779 * 120.00355 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99506 * 354.98509 * 14 13 12 16 16 C 1.50694 * 120.00123 * 174.98242 * 14 13 12 17 17 C 1.50701 * 110.01600 * 64.85359 * 16 14 13 18 18 C 1.38248 * 119.97173 * 185.82885 * 17 16 14 19 19 C 1.38199 * 120.02222 * 179.76417 * 18 17 16 20 20 C 1.38459 * 119.97469 * 0.50395 * 19 18 17 21 21 F 1.35099 * 120.02776 * 179.76519 * 20 19 18 22 22 C 1.38464 * 119.94768 * 359.74698 * 20 19 18 23 23 C 1.38197 * 119.97270 * 0.02562 * 22 20 19 24 24 C 1.53872 * 110.03583 * 303.40813 * 16 14 13 25 25 C 1.54268 * 106.60050 * 240.71842 * 24 16 14 26 26 C 1.54884 * 104.19705 * 23.60566 * 25 24 16 27 27 C 1.54266 * 110.03235 * 186.24112 * 16 14 13 28 28 H 0.97002 * 120.00281 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00465 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47384 * 299.73098 * 12 10 9 31 31 H 1.08999 * 109.47535 * 59.72861 * 12 10 9 32 32 H 0.96994 * 119.99848 * 359.97438 * 13 12 10 33 33 H 1.07994 * 119.99210 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.01580 * 180.25035 * 19 18 17 35 35 H 1.08002 * 120.01101 * 180.02562 * 22 20 19 36 36 H 1.08007 * 119.98516 * 180.02562 * 23 22 20 37 37 H 1.09005 * 110.02889 * 359.97438 * 24 16 14 38 38 H 1.09001 * 110.03271 * 121.42965 * 24 16 14 39 39 H 1.09004 * 110.48377 * 264.93064 * 25 24 16 40 40 H 1.08993 * 110.59966 * 142.34415 * 25 24 16 41 41 H 1.09001 * 110.76050 * 203.74640 * 26 25 24 42 42 H 1.09001 * 110.75705 * 80.37697 * 26 25 24 43 43 H 1.09002 * 110.48620 * 214.35203 * 27 16 14 44 44 H 1.09003 * 110.48761 * 336.99629 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0463 -1.4002 5 1 1.4456 2.6528 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0054 12 6 5.5607 -2.3705 0.0000 13 7 6.0490 -3.7517 0.0065 14 6 7.3741 -3.9980 0.0082 15 8 8.1615 -3.0805 -0.0875 16 6 7.8773 -5.4133 0.1290 17 6 7.4625 -6.2131 -1.0790 18 6 7.7123 -7.5720 -1.1266 19 6 7.3280 -8.3074 -2.2318 20 6 6.7020 -7.6808 -3.2960 21 9 6.3301 -8.3978 -4.3790 22 6 6.4570 -6.3188 -3.2493 23 6 6.8380 -5.5864 -2.1411 24 6 7.3220 -6.0628 1.4086 25 6 8.5406 -6.4396 2.2763 26 6 9.6614 -5.4869 1.7912 27 6 9.4141 -5.4181 0.2637 28 1 -0.4851 0.8400 -0.0004 29 1 3.8648 -0.3633 -0.0004 30 1 5.9240 -1.8609 -0.8923 31 1 5.9240 -1.8525 0.8875 32 1 5.4188 -4.4889 0.0104 33 1 8.2041 -8.0599 -0.2981 34 1 7.5195 -9.3696 -2.2672 35 1 5.9684 -5.8291 -4.0787 36 1 6.6466 -4.5240 -2.1043 37 1 6.6888 -5.3541 1.9425 38 1 6.7523 -6.9572 1.1564 39 1 8.8231 -7.4786 2.1066 40 1 8.3268 -6.2709 3.3317 41 1 10.6444 -5.9065 2.0048 42 1 9.5539 -4.5016 2.2447 43 1 9.8376 -6.2922 -0.2310 44 1 9.8362 -4.5023 -0.1502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344171555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:33 Heat of formation + Delta-G solvation = -99.110877 kcal Electronic energy + Delta-G solvation = -28796.865333 eV Core-core repulsion = 24628.079435 eV Total energy + Delta-G solvation = -4168.785898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03008 -41.14989 -38.97777 -38.32120 -37.06731 -34.63920 -33.86168 -31.96857 -31.78309 -31.32881 -29.00327 -28.43174 -27.28917 -24.54955 -23.41344 -22.56367 -21.60706 -20.85847 -19.78286 -19.35810 -18.56833 -18.06024 -17.43166 -16.51174 -16.06413 -15.85358 -15.72542 -15.50467 -15.37339 -15.08518 -14.89566 -14.42988 -14.16318 -13.81847 -13.65074 -13.45273 -13.30941 -13.22983 -12.89097 -12.79578 -12.52566 -12.21921 -12.18172 -11.68643 -11.46125 -11.35168 -11.32148 -11.26632 -11.14512 -11.04131 -10.77798 -10.67689 -10.09723 -9.73990 -9.73406 -9.30910 -8.95816 -8.81611 -8.72034 -8.34069 -6.43967 -3.96742 0.90166 1.02858 2.60112 2.96328 3.01048 3.09051 3.16671 3.33161 3.51666 4.00319 4.06522 4.22331 4.33203 4.40406 4.49871 4.57874 4.69618 4.80554 4.94595 5.06628 5.10488 5.17660 5.23708 5.25587 5.40568 5.46473 5.60332 5.66630 5.67560 5.70935 5.71326 5.74519 5.75898 5.86227 5.91468 5.95823 6.05200 6.11143 6.15639 6.26180 6.48705 6.66992 7.40177 7.63710 7.96500 8.25046 8.41807 8.78330 9.26159 9.59312 10.68127 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.003229 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.988497 B = 8669.705030 C =10141.112532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.436 3.564 11 O -0.577 6.577 12 C 0.104 3.896 13 N -0.707 5.707 14 C 0.527 3.473 15 O -0.540 6.540 16 C -0.038 4.038 17 C -0.080 4.080 18 C -0.080 4.080 19 C -0.152 4.152 20 C 0.096 3.904 21 F -0.141 7.141 22 C -0.143 4.143 23 C -0.086 4.086 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.104 4.104 28 H 0.276 0.724 29 H 0.374 0.626 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.414 0.586 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.373 -13.021 -0.029 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.024 4.024 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.418 6.418 16 C -0.041 4.041 17 C -0.080 4.080 18 C -0.098 4.098 19 C -0.171 4.171 20 C 0.076 3.924 21 F -0.120 7.120 22 C -0.162 4.162 23 C -0.104 4.104 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.162 4.162 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.207 0.793 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.247 -12.942 -0.120 23.194 hybrid contribution -0.056 1.035 -0.265 1.070 sum 19.191 -11.907 -0.385 22.588 Atomic orbital electron populations 1.69616 1.05717 1.27846 1.48026 1.25064 0.95523 0.98157 0.97101 0.86678 0.79899 0.83801 0.79151 1.19377 1.19951 1.19257 1.19439 0.78936 0.96806 1.48729 0.86065 1.42123 1.07711 1.06115 1.65346 1.19616 0.87998 0.84927 0.85222 1.90552 1.69127 1.30841 1.55598 1.21011 0.93965 0.84024 1.03388 1.45816 1.07008 1.09225 1.74125 1.20183 0.82114 0.90656 0.75849 1.90672 1.55417 1.45981 1.49686 1.20386 0.98022 0.91365 0.94316 1.19589 0.99593 0.93883 0.94968 1.20753 0.98731 0.92771 0.97568 1.21089 1.01502 1.00956 0.93518 1.17750 0.99958 0.89890 0.84764 1.91500 1.89508 1.78035 1.52919 1.21170 1.02379 0.92369 1.00278 1.21176 0.96329 1.00724 0.92176 1.22390 0.98428 1.01211 0.93435 1.22382 0.94719 0.99499 0.99448 1.22516 0.98449 0.99998 0.95242 1.22450 0.91085 1.03635 0.97041 0.91351 0.79271 0.89638 0.89708 0.74738 0.84713 0.84642 0.84458 0.84699 0.90502 0.90163 0.91369 0.91222 0.91200 0.91098 0.90719 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.70 13.96 55.50 0.77 -23.92 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.74 27.74 -169.99 -4.71 14.02 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.43 10.16 -14.94 -0.15 -8.59 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 9 N -0.58 -13.07 5.09 -10.97 -0.06 -13.13 16 10 C 0.44 9.30 7.85 -10.99 -0.09 9.21 16 11 O -0.58 -14.21 15.24 5.55 0.08 -14.12 16 12 C 0.10 1.71 6.16 -5.19 -0.03 1.68 16 13 N -0.71 -10.68 4.04 -61.47 -0.25 -10.93 16 14 C 0.53 7.45 4.84 -10.99 -0.05 7.40 16 15 O -0.54 -9.01 15.38 5.55 0.09 -8.92 16 16 C -0.04 -0.41 0.62 -155.70 -0.10 -0.51 16 17 C -0.08 -0.87 4.65 -104.62 -0.49 -1.35 16 18 C -0.08 -0.72 8.04 -39.59 -0.32 -1.04 16 19 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 20 C 0.10 1.08 7.30 -39.42 -0.29 0.80 16 21 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 22 C -0.14 -1.68 10.03 -39.51 -0.40 -2.08 16 23 C -0.09 -1.05 8.76 -39.60 -0.35 -1.40 16 24 C -0.12 -1.13 5.55 -25.61 -0.14 -1.27 16 25 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 26 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 27 C -0.10 -1.03 5.68 -25.07 -0.14 -1.17 16 28 H 0.28 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.37 7.49 5.76 -40.82 -0.24 7.26 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 6.43 7.13 -40.82 -0.29 6.14 16 33 H 0.14 0.90 7.85 -52.49 -0.41 0.48 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 1.80 5.94 -52.48 -0.31 1.49 16 37 H 0.08 0.84 7.47 -51.93 -0.39 0.46 16 38 H 0.08 0.71 7.04 -51.93 -0.37 0.34 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.62 7.32 -51.93 -0.38 0.24 16 44 H 0.09 1.06 6.77 -51.93 -0.35 0.70 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -31.34 364.30 -7.59 -38.93 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.67 Total: 15.64 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.37 Total: -1.40 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.47 Total: -47.98 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.34 -7.59 -38.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344171555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.180 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds