Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48505 * 109.46552 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47385 * 29.99925 * 3 2 1 6 6 H 1.48493 * 109.47264 * 150.00241 * 3 2 1 7 7 C 1.38946 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00180 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99900 * 179.97438 * 7 2 1 10 10 C 1.34780 * 120.00024 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00139 * 359.73283 * 10 9 7 12 12 C 1.50698 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47222 * 179.72929 * 12 10 9 14 14 C 1.34779 * 120.00355 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99506 * 354.98509 * 14 13 12 16 16 C 1.50694 * 120.00123 * 174.98242 * 14 13 12 17 17 C 1.50701 * 110.01600 * 64.85359 * 16 14 13 18 18 C 1.38248 * 119.97173 * 185.82885 * 17 16 14 19 19 C 1.38199 * 120.02222 * 179.76417 * 18 17 16 20 20 C 1.38459 * 119.97469 * 0.50395 * 19 18 17 21 21 F 1.35099 * 120.02776 * 179.76519 * 20 19 18 22 22 C 1.38464 * 119.94768 * 359.74698 * 20 19 18 23 23 C 1.38197 * 119.97270 * 0.02562 * 22 20 19 24 24 C 1.53872 * 110.03583 * 303.40813 * 16 14 13 25 25 C 1.54268 * 106.60050 * 240.71842 * 24 16 14 26 26 C 1.54884 * 104.19705 * 23.60566 * 25 24 16 27 27 C 1.54266 * 110.03235 * 186.24112 * 16 14 13 28 28 H 0.97002 * 120.00281 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00465 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47384 * 299.73098 * 12 10 9 31 31 H 1.08999 * 109.47535 * 59.72861 * 12 10 9 32 32 H 0.96994 * 119.99848 * 359.97438 * 13 12 10 33 33 H 1.07994 * 119.99210 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.01580 * 180.25035 * 19 18 17 35 35 H 1.08002 * 120.01101 * 180.02562 * 22 20 19 36 36 H 1.08007 * 119.98516 * 180.02562 * 23 22 20 37 37 H 1.09005 * 110.02889 * 359.97438 * 24 16 14 38 38 H 1.09001 * 110.03271 * 121.42965 * 24 16 14 39 39 H 1.09004 * 110.48377 * 264.93064 * 25 24 16 40 40 H 1.08993 * 110.59966 * 142.34415 * 25 24 16 41 41 H 1.09001 * 110.76050 * 203.74640 * 26 25 24 42 42 H 1.09001 * 110.75705 * 80.37697 * 26 25 24 43 43 H 1.09002 * 110.48620 * 214.35203 * 27 16 14 44 44 H 1.09003 * 110.48761 * 336.99629 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0463 -1.4002 5 1 1.4456 2.6528 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0054 12 6 5.5607 -2.3705 0.0000 13 7 6.0490 -3.7517 0.0065 14 6 7.3741 -3.9980 0.0082 15 8 8.1615 -3.0805 -0.0875 16 6 7.8773 -5.4133 0.1290 17 6 7.4625 -6.2131 -1.0790 18 6 7.7123 -7.5720 -1.1266 19 6 7.3280 -8.3074 -2.2318 20 6 6.7020 -7.6808 -3.2960 21 9 6.3301 -8.3978 -4.3790 22 6 6.4570 -6.3188 -3.2493 23 6 6.8380 -5.5864 -2.1411 24 6 7.3220 -6.0628 1.4086 25 6 8.5406 -6.4396 2.2763 26 6 9.6614 -5.4869 1.7912 27 6 9.4141 -5.4181 0.2637 28 1 -0.4851 0.8400 -0.0004 29 1 3.8648 -0.3633 -0.0004 30 1 5.9240 -1.8609 -0.8923 31 1 5.9240 -1.8525 0.8875 32 1 5.4188 -4.4889 0.0104 33 1 8.2041 -8.0599 -0.2981 34 1 7.5195 -9.3696 -2.2672 35 1 5.9684 -5.8291 -4.0787 36 1 6.6466 -4.5240 -2.1043 37 1 6.6888 -5.3541 1.9425 38 1 6.7523 -6.9572 1.1564 39 1 8.8231 -7.4786 2.1066 40 1 8.3268 -6.2709 3.3317 41 1 10.6444 -5.9065 2.0048 42 1 9.5539 -4.5016 2.2447 43 1 9.8376 -6.2922 -0.2310 44 1 9.8362 -4.5023 -0.1502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344171555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = -119.072235 kcal Electronic energy + Delta-G solvation = -28797.730923 eV Core-core repulsion = 24628.079435 eV Total energy + Delta-G solvation = -4169.651488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.92356 -42.13637 -40.48846 -39.55411 -37.95324 -36.32549 -35.43157 -33.85822 -32.74593 -32.14139 -29.97842 -29.43749 -28.40291 -26.30142 -24.34502 -23.38198 -22.65906 -21.57694 -21.44534 -20.75938 -20.17095 -18.98346 -18.49552 -17.58322 -17.35055 -17.09831 -16.82643 -16.61918 -16.55642 -16.53676 -15.98381 -15.58643 -15.46081 -14.98275 -14.75419 -14.47838 -14.34884 -14.27363 -14.24662 -14.05473 -13.76097 -13.66420 -13.55019 -12.98862 -12.49772 -12.46520 -12.26891 -12.11883 -12.02187 -12.00495 -11.91399 -11.81193 -11.60125 -11.42477 -10.86377 -10.67517 -10.35546 -10.22325 -10.09353 -9.56878 -8.47191 -6.09291 0.05802 0.21546 1.28960 1.32128 1.41991 1.47893 1.77362 1.95023 2.18668 2.50708 2.83481 3.08939 3.23128 3.39651 3.45764 3.64603 3.80407 3.85118 3.92100 4.01478 4.23928 4.27177 4.33618 4.36390 4.42805 4.52465 4.53913 4.62660 4.79816 4.86414 4.93214 5.00688 5.09737 5.12453 5.13841 5.19052 5.24574 5.28265 5.37914 5.43204 5.47144 5.51389 5.85351 5.86415 6.41488 6.46948 6.76530 7.06507 7.27428 7.76082 8.69266 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.003229 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.988497 B = 8669.705030 C =10141.112532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.612 6.612 12 C 0.115 3.885 13 N -0.710 5.710 14 C 0.528 3.472 15 O -0.566 6.566 16 C -0.032 4.032 17 C -0.082 4.082 18 C -0.069 4.069 19 C -0.142 4.142 20 C 0.079 3.921 21 F -0.148 7.148 22 C -0.158 4.158 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.103 4.103 28 H 0.281 0.719 29 H 0.391 0.609 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.412 0.588 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.642 -13.694 0.923 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.232 3.768 11 O -0.498 6.498 12 C -0.013 4.013 13 N -0.364 5.364 14 C 0.315 3.685 15 O -0.445 6.445 16 C -0.036 4.036 17 C -0.083 4.083 18 C -0.087 4.087 19 C -0.160 4.160 20 C 0.060 3.940 21 F -0.127 7.127 22 C -0.176 4.176 23 C -0.124 4.124 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.140 4.140 28 H 0.091 0.909 29 H 0.227 0.773 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.250 0.750 33 H 0.188 0.812 34 H 0.182 0.818 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.543 -13.631 0.834 26.356 hybrid contribution -1.103 1.119 -0.586 1.677 sum 21.440 -12.512 0.248 24.825 Atomic orbital electron populations 1.69779 1.08034 1.29463 1.49231 1.26053 0.96407 1.02543 0.95695 0.85457 0.79588 0.77104 0.80041 1.18163 1.19776 1.15599 1.19021 0.80960 0.95253 1.50804 0.91884 1.41925 1.06130 1.07408 1.66272 1.20487 0.90016 0.83886 0.82410 1.90539 1.70721 1.32274 1.56288 1.20918 0.89710 0.85502 1.05139 1.45863 1.07555 1.08444 1.74532 1.20770 0.81196 0.91983 0.74531 1.90657 1.55793 1.47233 1.50836 1.20425 0.98909 0.89093 0.95130 1.19668 0.99470 0.94871 0.94285 1.21071 0.97711 0.91648 0.98229 1.21429 0.99804 1.02336 0.92466 1.17969 1.00893 0.89742 0.85394 1.91479 1.89737 1.78049 1.53449 1.21215 1.02997 0.93064 1.00367 1.21095 0.97956 1.00042 0.93275 1.22433 0.99271 1.01071 0.92793 1.22394 0.93097 1.00684 0.99149 1.22510 1.00028 0.99469 0.93992 1.22473 0.89836 1.03508 0.98194 0.90908 0.77269 0.87868 0.87716 0.74994 0.81230 0.81799 0.84754 0.86571 0.92338 0.88941 0.88667 0.90832 0.89012 0.93099 0.88457 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.96 21.66 0.30 -53.96 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 3 Si 0.96 37.93 27.74 68.60 1.90 39.83 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 7 C -0.33 -18.74 10.16 84.04 0.85 -17.89 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 9 N -0.58 -26.34 5.09 -306.99 -1.56 -27.90 16 10 C 0.44 19.17 7.85 87.66 0.69 19.86 16 11 O -0.61 -31.35 15.24 -3.07 -0.05 -31.40 16 12 C 0.11 3.70 6.16 85.63 0.53 4.22 16 13 N -0.71 -21.36 4.04 -466.79 -1.89 -23.24 16 14 C 0.53 14.66 4.84 87.65 0.42 15.08 16 15 O -0.57 -18.60 15.38 -3.05 -0.05 -18.64 16 16 C -0.03 -0.66 0.62 -52.95 -0.03 -0.69 16 17 C -0.08 -1.65 4.65 -19.86 -0.09 -1.74 16 18 C -0.07 -1.00 8.04 22.26 0.18 -0.82 16 19 C -0.14 -2.26 10.03 22.31 0.22 -2.04 16 20 C 0.08 1.72 7.30 22.38 0.16 1.88 16 21 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 22 C -0.16 -3.77 10.03 22.31 0.22 -3.55 16 23 C -0.11 -2.59 8.76 22.26 0.19 -2.39 16 24 C -0.12 -2.00 5.55 31.32 0.17 -1.83 16 25 C -0.12 -1.39 6.83 31.67 0.22 -1.18 16 26 C -0.12 -1.76 6.91 31.88 0.22 -1.54 16 27 C -0.10 -1.78 5.68 31.67 0.18 -1.60 16 28 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.41 13.01 7.13 -92.71 -0.66 12.35 16 33 H 0.17 1.30 7.85 -2.91 -0.02 1.28 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.12 3.23 5.94 -2.91 -0.02 3.21 16 37 H 0.06 1.22 7.47 -2.38 -0.02 1.20 16 38 H 0.09 1.34 7.04 -2.39 -0.02 1.33 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 43 H 0.10 1.25 7.32 -2.39 -0.02 1.23 16 44 H 0.07 1.50 6.77 -2.39 -0.02 1.48 16 Total: -1.00 -73.12 364.30 3.85 -69.27 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -0.20 Total: 42.88 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.61 Total: 5.88 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.15 Total: -105.11 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal Total: -73.12 3.85 -69.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344171555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.801 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds