Wall clock time and date at job start Tue Mar 31 2020 17:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 N 1.46896 * 109.47256 * 180.02562 * 6 5 3 8 8 C 1.46908 * 110.99749 * 294.29788 * 7 6 5 9 9 C 1.53239 * 109.33821 * 172.74356 * 8 7 6 10 10 N 1.47085 * 108.52061 * 53.83635 * 9 8 7 11 11 S 1.65597 * 120.88492 * 128.83095 * 10 9 8 12 12 O 1.42097 * 104.27617 * 26.05040 * 11 10 9 13 13 O 1.42108 * 104.27706 * 153.90568 * 11 10 9 14 14 C 1.81392 * 104.45214 * 269.97804 * 11 10 9 15 15 C 1.52997 * 109.47370 * 179.97438 * 14 11 10 16 16 C 1.50709 * 109.47223 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99670 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99936 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99934 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 60.00351 * 20 18 16 22 22 H 1.48504 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47405 * 300.00152 * 20 18 16 24 24 C 1.47083 * 118.23384 * 308.81087 * 10 9 8 25 25 C 1.46904 * 111.00341 * 170.00048 * 7 6 5 26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 30 30 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 31 31 H 1.09004 * 109.47066 * 299.99799 * 6 5 3 32 32 H 1.08994 * 109.47405 * 59.99969 * 6 5 3 33 33 H 1.08998 * 109.49074 * 292.70946 * 8 7 6 34 34 H 1.09003 * 109.48730 * 52.78985 * 8 7 6 35 35 H 1.08993 * 109.63384 * 294.12449 * 9 8 7 36 36 H 1.08997 * 109.62708 * 173.53545 * 9 8 7 37 37 H 1.09000 * 109.47321 * 300.00062 * 14 11 10 38 38 H 1.09004 * 109.47316 * 59.99526 * 14 11 10 39 39 H 1.08995 * 109.47520 * 299.99783 * 15 14 11 40 40 H 1.09006 * 109.47129 * 60.00138 * 15 14 11 41 41 H 0.96995 * 120.00180 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.62618 * 291.47573 * 24 10 9 43 43 H 1.08999 * 109.62909 * 170.89432 * 24 10 9 44 44 H 1.09005 * 109.48558 * 307.20981 * 25 7 6 45 45 H 1.08996 * 109.49341 * 67.28776 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 7 5.4669 2.8191 -0.0186 8 6 6.0277 2.2863 1.2304 9 6 7.5539 2.2160 1.1120 10 7 8.0540 3.5432 0.7222 11 16 9.2730 4.2752 1.5709 12 8 9.9941 3.1961 2.1496 13 8 9.8855 5.1428 0.6267 14 6 8.4199 5.2317 2.8545 15 6 9.4515 5.9626 3.7162 16 6 8.7427 6.7578 4.7823 17 1 7.6643 6.7436 4.8392 18 6 9.4709 7.5042 5.6843 19 7 10.7840 7.5226 5.6140 20 14 8.5923 8.4904 7.0052 21 1 7.7949 7.5738 7.8591 22 1 9.5936 9.1996 7.8416 23 1 7.6901 9.4811 6.3654 24 6 7.4427 4.2027 -0.4417 25 6 5.9210 4.1948 -0.2622 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.9595 0.7833 0.8836 30 1 3.9525 0.7785 -0.8964 31 1 3.6067 3.2339 -0.9017 32 1 3.6139 3.2387 0.8782 33 1 5.7568 2.9406 2.0589 34 1 5.6305 1.2873 1.4103 35 1 7.8290 1.4837 0.3530 36 1 7.9829 1.9308 2.0725 37 1 7.7571 5.9589 2.3856 38 1 7.8352 4.5583 3.4812 39 1 10.1140 5.2352 4.1853 40 1 10.0366 6.6360 3.0898 41 1 11.2964 8.0474 6.2488 42 1 7.7072 3.6613 -1.3501 43 1 7.7982 5.2310 -0.5084 44 1 5.4462 4.5799 -1.1647 45 1 5.6516 4.8226 0.5871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348102450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:34 Heat of formation + Delta-G solvation = -152.420578 kcal Electronic energy + Delta-G solvation = -27182.570831 eV Core-core repulsion = 23134.544412 eV Total energy + Delta-G solvation = -4048.026419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88093 -39.18936 -36.98427 -36.67580 -35.51447 -35.15413 -33.90440 -31.79607 -31.17940 -31.15818 -28.30539 -26.50270 -25.60690 -24.00530 -23.27689 -21.77368 -20.90727 -20.41846 -18.63586 -18.10031 -17.55886 -17.07489 -16.96485 -16.52762 -15.99199 -15.55046 -15.48670 -15.10544 -14.86144 -14.60543 -14.55520 -14.53245 -13.91708 -13.59131 -13.41537 -13.12647 -12.76885 -12.54986 -12.42636 -12.24106 -12.09937 -11.81649 -11.77729 -11.59953 -11.57914 -11.36514 -11.22992 -11.09038 -11.07142 -10.98877 -10.87881 -10.79902 -10.43742 -10.39596 -9.78773 -9.40014 -8.93318 -8.53558 -8.51719 -6.13894 -4.19683 0.73197 1.80701 2.24812 2.98207 3.25666 3.30654 3.32360 3.60331 4.28041 4.29240 4.37296 4.46893 4.52339 4.55839 4.65288 4.68961 4.76716 4.91530 5.04572 5.05874 5.10158 5.13233 5.21041 5.22334 5.29976 5.43398 5.46783 5.53149 5.57150 5.60817 5.69014 5.81148 5.94896 5.97966 6.04163 6.46719 6.60975 6.70920 6.73301 7.28016 7.33329 7.34287 7.78606 8.15868 8.83352 9.45049 10.97034 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.002674 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.015634 B =10467.178030 C =11947.766229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.112 4.112 6 C 0.066 3.934 7 N -0.535 5.535 8 C 0.031 3.969 9 C 0.129 3.871 10 N -1.009 6.009 11 S 2.592 3.408 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.590 4.590 15 C 0.029 3.971 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.129 3.871 25 C 0.041 3.959 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 -15.095 -13.414 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.396 6.396 5 C -0.150 4.150 6 C -0.062 4.062 7 N -0.260 5.260 8 C -0.098 4.098 9 C 0.003 3.997 10 N -0.846 5.846 11 S 2.690 3.310 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.723 4.723 15 C -0.010 4.010 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 C 0.003 3.997 25 C -0.089 4.089 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.326 -15.132 -13.943 26.267 hybrid contribution -1.671 1.281 1.741 2.732 sum -17.997 -13.851 -12.203 25.781 Atomic orbital electron populations 1.23279 0.76167 1.03772 1.02638 1.86510 1.23596 1.33513 1.84110 1.23801 0.92225 0.81305 0.72138 1.90697 1.67391 1.36329 1.45170 1.21387 0.86822 1.00056 1.06745 1.21855 0.87608 0.93918 1.02850 1.61831 1.07277 1.21714 1.35204 1.22665 0.95833 1.00711 0.90593 1.21420 0.92302 0.84208 1.01760 1.58087 1.56717 1.27820 1.41941 1.05710 0.74606 0.74886 0.75766 1.93534 1.69254 1.53042 1.79513 1.93538 1.73600 1.68128 1.60057 1.30505 1.13303 1.12962 1.15508 1.18952 0.92124 0.95542 0.94396 1.20954 0.93105 1.28504 1.13477 0.92203 1.25066 0.94940 0.96641 0.97826 1.69940 1.05128 1.40748 1.36971 0.86531 0.79266 0.80108 0.81369 1.20105 1.21035 1.20094 1.21434 0.91116 0.98473 0.88676 1.22531 0.96279 0.88343 1.01706 0.91833 0.91839 0.88020 0.87399 0.86527 0.89595 0.93530 0.93660 0.89467 0.90503 0.88718 0.86471 0.86492 0.94873 0.94874 0.92449 0.90507 0.88669 0.89426 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.86 10.57 -39.26 -0.41 -3.27 16 3 C 0.46 4.04 7.96 36.00 0.29 4.32 16 4 O -0.51 -5.94 15.73 -18.76 -0.30 -6.24 16 5 C -0.11 -0.73 5.74 -27.89 -0.16 -0.89 16 6 C 0.07 0.53 4.25 -3.83 -0.02 0.52 16 7 N -0.54 -4.74 4.63 -234.32 -1.08 -5.83 16 8 C 0.03 0.28 5.46 -3.70 -0.02 0.26 16 9 C 0.13 1.40 6.47 -3.60 -0.02 1.38 16 10 N -1.01 -13.25 3.26 -113.23 -0.37 -13.62 16 11 S 2.59 45.78 5.41 -107.50 -0.58 45.20 16 12 O -0.96 -19.51 16.79 -57.54 -0.97 -20.48 16 13 O -0.96 -19.59 16.79 -57.54 -0.97 -20.55 16 14 C -0.59 -11.13 6.11 37.16 0.23 -10.91 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.13 1.43 6.46 -3.60 -0.02 1.41 16 25 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 26 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 27 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.11 0.57 6.40 -51.93 -0.33 0.24 16 30 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.71 7.93 -51.93 -0.41 0.30 16 32 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.58 6.16 -51.93 -0.32 0.26 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.05 7.19 -51.93 -0.37 0.67 16 37 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 38 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 1.08 7.19 -51.93 -0.37 0.71 16 44 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -36.32 380.19 -9.73 -46.05 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.26 Total: -2.65 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 0.77 Total: -14.83 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.72 Total: -45.13 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -2.64 Total: -50.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.58 Total: 45.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.32 -9.73 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348102450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.373 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds