Wall clock time and date at job start Tue Mar 31 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 N 1.46896 * 109.47256 * 180.02562 * 6 5 3 8 8 C 1.46908 * 110.99749 * 294.29788 * 7 6 5 9 9 C 1.53239 * 109.33821 * 172.74356 * 8 7 6 10 10 N 1.47085 * 108.52061 * 53.83635 * 9 8 7 11 11 S 1.65597 * 120.88492 * 128.83095 * 10 9 8 12 12 O 1.42097 * 104.27617 * 26.05040 * 11 10 9 13 13 O 1.42108 * 104.27706 * 153.90568 * 11 10 9 14 14 C 1.81392 * 104.45214 * 269.97804 * 11 10 9 15 15 C 1.52997 * 109.47370 * 179.97438 * 14 11 10 16 16 C 1.50709 * 109.47223 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99670 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99936 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99934 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 60.00351 * 20 18 16 22 22 H 1.48504 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47405 * 300.00152 * 20 18 16 24 24 C 1.47083 * 118.23384 * 308.81087 * 10 9 8 25 25 C 1.46904 * 111.00341 * 170.00048 * 7 6 5 26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 30 30 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 31 31 H 1.09004 * 109.47066 * 299.99799 * 6 5 3 32 32 H 1.08994 * 109.47405 * 59.99969 * 6 5 3 33 33 H 1.08998 * 109.49074 * 292.70946 * 8 7 6 34 34 H 1.09003 * 109.48730 * 52.78985 * 8 7 6 35 35 H 1.08993 * 109.63384 * 294.12449 * 9 8 7 36 36 H 1.08997 * 109.62708 * 173.53545 * 9 8 7 37 37 H 1.09000 * 109.47321 * 300.00062 * 14 11 10 38 38 H 1.09004 * 109.47316 * 59.99526 * 14 11 10 39 39 H 1.08995 * 109.47520 * 299.99783 * 15 14 11 40 40 H 1.09006 * 109.47129 * 60.00138 * 15 14 11 41 41 H 0.96995 * 120.00180 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.62618 * 291.47573 * 24 10 9 43 43 H 1.08999 * 109.62909 * 170.89432 * 24 10 9 44 44 H 1.09005 * 109.48558 * 307.20981 * 25 7 6 45 45 H 1.08996 * 109.49341 * 67.28776 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 7 5.4669 2.8191 -0.0186 8 6 6.0277 2.2863 1.2304 9 6 7.5539 2.2160 1.1120 10 7 8.0540 3.5432 0.7222 11 16 9.2730 4.2752 1.5709 12 8 9.9941 3.1961 2.1496 13 8 9.8855 5.1428 0.6267 14 6 8.4199 5.2317 2.8545 15 6 9.4515 5.9626 3.7162 16 6 8.7427 6.7578 4.7823 17 1 7.6643 6.7436 4.8392 18 6 9.4709 7.5042 5.6843 19 7 10.7840 7.5226 5.6140 20 14 8.5923 8.4904 7.0052 21 1 7.7949 7.5738 7.8591 22 1 9.5936 9.1996 7.8416 23 1 7.6901 9.4811 6.3654 24 6 7.4427 4.2027 -0.4417 25 6 5.9210 4.1948 -0.2622 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.9595 0.7833 0.8836 30 1 3.9525 0.7785 -0.8964 31 1 3.6067 3.2339 -0.9017 32 1 3.6139 3.2387 0.8782 33 1 5.7568 2.9406 2.0589 34 1 5.6305 1.2873 1.4103 35 1 7.8290 1.4837 0.3530 36 1 7.9829 1.9308 2.0725 37 1 7.7571 5.9589 2.3856 38 1 7.8352 4.5583 3.4812 39 1 10.1140 5.2352 4.1853 40 1 10.0366 6.6360 3.0898 41 1 11.2964 8.0474 6.2488 42 1 7.7072 3.6613 -1.3501 43 1 7.7982 5.2310 -0.5084 44 1 5.4462 4.5799 -1.1647 45 1 5.6516 4.8226 0.5871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348102450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:33 Heat of formation + Delta-G solvation = -179.905745 kcal Electronic energy + Delta-G solvation = -27183.762677 eV Core-core repulsion = 23134.544412 eV Total energy + Delta-G solvation = -4049.218265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52524 -39.96925 -38.21830 -37.64216 -37.02030 -36.06118 -35.89495 -33.13669 -32.51118 -31.93672 -28.85824 -27.63017 -27.20524 -24.81527 -24.05223 -23.53096 -21.66228 -21.27457 -19.82708 -19.18153 -18.71285 -18.27448 -17.69327 -17.57667 -17.25192 -17.07597 -16.56059 -16.21707 -15.88617 -15.74561 -15.54399 -15.33866 -15.08562 -14.65174 -14.46339 -14.26189 -13.84420 -13.74994 -13.52686 -13.30654 -13.23056 -13.15014 -12.92945 -12.85257 -12.81968 -12.81198 -12.41145 -12.25344 -12.22124 -12.18095 -11.93298 -11.82897 -11.74886 -11.61865 -11.56368 -11.13321 -10.65732 -10.05063 -9.30657 -8.27524 -6.41780 -0.71144 1.17044 1.38829 1.42076 1.50373 1.68687 1.76562 2.36232 2.85659 2.92639 3.05422 3.16945 3.61638 3.72430 3.92210 4.00968 4.03357 4.09766 4.17174 4.28945 4.31157 4.33512 4.37817 4.40175 4.52881 4.55668 4.71779 4.73059 4.77432 4.82949 4.88018 4.94259 5.00694 5.08688 5.16363 5.25779 5.25890 5.40311 5.63192 5.66235 6.00111 6.02875 6.04820 6.71332 6.71403 7.28255 8.84375 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.002674 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.015634 B =10467.178030 C =11947.766229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.545 6.545 5 C -0.105 4.105 6 C 0.070 3.930 7 N -0.532 5.532 8 C 0.032 3.968 9 C 0.120 3.880 10 N -0.999 5.999 11 S 2.617 3.383 12 O -0.991 6.991 13 O -0.992 6.992 14 C -0.588 4.588 15 C 0.022 3.978 16 C -0.540 4.540 17 H 0.073 0.927 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.123 3.877 25 C 0.042 3.958 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.702 -16.327 -13.825 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.435 6.435 5 C -0.142 4.142 6 C -0.058 4.058 7 N -0.257 5.257 8 C -0.097 4.097 9 C -0.004 4.004 10 N -0.839 5.839 11 S 2.715 3.285 12 O -0.981 6.981 13 O -0.983 6.983 14 C -0.720 4.720 15 C -0.017 4.017 16 C -0.579 4.579 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.002 4.002 25 C -0.088 4.088 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.657 -16.379 -14.349 28.675 hybrid contribution -1.000 1.571 1.776 2.573 sum -19.657 -14.808 -12.573 27.636 Atomic orbital electron populations 1.23514 0.75045 1.05591 1.02363 1.86507 1.24799 1.33046 1.83704 1.24215 0.93000 0.80964 0.70984 1.90686 1.68319 1.37457 1.47035 1.21395 0.85305 0.99152 1.08385 1.21793 0.86867 0.95003 1.02131 1.61847 1.07655 1.21153 1.34999 1.22713 0.94337 1.02279 0.90407 1.21710 0.93682 0.82903 1.02144 1.57724 1.56067 1.28447 1.41638 1.04654 0.74816 0.74009 0.75054 1.93490 1.70684 1.53712 1.80231 1.93491 1.74931 1.69216 1.60630 1.30407 1.12133 1.13646 1.15808 1.18798 0.93191 0.94957 0.94720 1.21464 0.93949 1.28540 1.13940 0.90906 1.26110 0.95671 0.97919 1.00507 1.70089 1.06965 1.41936 1.38220 0.85381 0.78123 0.78633 0.78222 1.18796 1.20844 1.18885 1.21670 0.92203 0.98285 0.88084 1.22532 0.94955 0.88836 1.02445 0.92282 0.92010 0.85205 0.85660 0.84727 0.89801 0.94913 0.94357 0.86544 0.88965 0.89057 0.84639 0.84507 0.97517 0.97611 0.92346 0.89132 0.89197 0.87478 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.05 10.57 -51.41 -0.54 -5.60 16 3 C 0.46 7.27 7.96 71.23 0.57 7.84 16 4 O -0.54 -12.25 15.73 21.94 0.35 -11.91 16 5 C -0.10 -1.06 5.74 29.85 0.17 -0.89 16 6 C 0.07 0.97 4.25 86.30 0.37 1.34 16 7 N -0.53 -7.89 4.63 -895.24 -4.15 -12.04 16 8 C 0.03 0.48 5.46 86.38 0.47 0.95 16 9 C 0.12 2.35 6.47 86.35 0.56 2.90 16 10 N -1.00 -24.81 3.26 -512.16 -1.67 -26.48 16 11 S 2.62 92.75 5.41 -56.49 -0.31 92.45 16 12 O -0.99 -40.54 16.79 -127.65 -2.14 -42.68 16 13 O -0.99 -40.97 16.79 -127.65 -2.14 -43.12 16 14 C -0.59 -22.24 6.11 71.98 0.44 -21.80 16 15 C 0.02 1.16 4.98 29.85 0.15 1.31 16 16 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 17 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.12 2.50 6.46 86.35 0.56 3.06 16 25 C 0.04 0.69 5.62 86.38 0.49 1.18 16 26 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 28 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.13 0.86 6.40 -2.38 -0.02 0.84 16 30 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.22 7.93 -2.38 -0.02 1.20 16 32 H 0.03 0.56 8.08 -2.39 -0.02 0.54 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.12 1.08 6.16 -2.39 -0.01 1.07 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.87 7.19 -2.39 -0.02 1.85 16 37 H 0.14 4.55 8.14 -2.39 -0.02 4.54 16 38 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.09 1.95 7.19 -2.39 -0.02 1.93 16 44 H 0.11 1.38 7.99 -2.38 -0.02 1.36 16 45 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -80.00 380.19 -1.66 -81.66 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.97 Total: 11.09 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.66 Total: -32.22 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -5.53 Total: -95.12 kcal Atomic # 8 Polarization: -98.82 SS G_CDS: -4.48 Total: -103.30 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 92.75 SS G_CDS: -0.31 Total: 92.45 kcal Total: -80.00 -1.66 -81.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348102450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.243 kcal (2) G-P(sol) polarization free energy of solvation -80.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds